New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 2238980 | 17 (0.740) | 4 (0.180) | 4/238 | NT | 17.7% | coding (800/1164 nt) | PP_1976 | HlyD family secretion protein |
? | NC_002947 | = 2239010 | 21 (0.950) | coding (770/1164 nt) | PP_1976 | HlyD family secretion protein |
CCGGCCTTCGATCGGTGTGTCGGGGTAGCTGTCGAACAACAGTTCCGCGCGCTGGCCGGGGTGCATGCGGCCGATCTGGGTTTCCTTGAAGTTGGCCTGCACCCAGATGTCTTCATCCGGCACGATCGACAGCAGGTAGGCGCCGGCCTGCACCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2238826‑2238980 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaccaTCGGCCAGCGCAATGCGCGCAATGGCCAGGTGGTGCAGGCCGGCGCCTACCTGCTGTCGATCGTGCCGGATGAAGACATCTGGGTGCAGGCCAACTTCAAGGAAACCCAGATCGGCCGCATGCACCCCGGCCAGCGCGCGGAACTGTTG < NC_002947/2239010‑2238862 CCGGCCTTCGATCGGTGTGTCGGGGTAGCTGTCGAACAACAGTTCCGCGCGCTGGCCGGGGTGCATGCGGCCGATCTGGGTTTCCTTGAAGTTGGCCTGCACCCAGATGTCTTCATCCGGCACGATCGACAGCAGGTAGGCGCCGGCCTG > 1:523911/1‑150 CGGCCTTCGATCGGTGTGTCGGGGTAGCTGTCGAACAACAGTTCCGCGCGCTGGCCGGGGTGCATGCGGCCGATCTGGGTTTCCTTGAAGTTGGCCTGCACCCAGATGTCTTCATCCGGCACGATCGACAGCAGGTAGGCGCCGGCCTGC < 1:113222/150‑1 AACAACAGTTCCGCGCGCTGGCCGGGGTGCATGCGGCCGATCTGGGTTTCCTTGAAGTTGGCCTGCACCCAGATGTCTTCATCCGGCACGATCGACAGCAGGTAGGCGCCGGCCTGCACCATCGGCCAGCGCAATGCGCGCAATGGCCAG > 2:171735/1‑150 AACAGTTCCGCGCGCTGGCCGGGGTGCATGCGGCCGATCTGGGTTTCCTTGAAGTTGGCCTGCACCCAGATGTCTTCATCCGGCACGATCGACAGCAGGTAGGCGCCGGCCTGCACCATCGGCCAGCGCAATGCGCGCAATGGCCAGGTG > 1:497999/1‑150 GCGCGCTGGCCGGGGTGCATGCGGCCGATCTGGGTTTCCTTGAAGTTGGCCTGCACCCAGATGTCTTCATCCGGCACGATCGACAGCAGGTAGGCGCCGGCCTGCACCATCGGCCAGCGCAATGCGCGCAATGGCCAGGTGGTGCAGGCC < 2:497999/150‑1 CGCTGGCCGGGGTGCATGCGGCCGATCTGGGTTTCCTTGAAGTTGGCCTGCACCCAGATGTCTTCATCCGGCACGATCGACAGCAGGTAGGCGCCGGCCTGCACCATCGGCCAGCGCAATGCGCGCAATGGCCAGGTGGCGCAGGCCGGC < 1:171735/150‑1 CATCGGCCAGCGCAATGCGCGCAATGGCCAGGTGGTGCAGGCCGGCGCCTACCTGCTGTCGATCGTGCCGGATGAAGACATCTGGGTGCAGGCCAACTTCAAGGAAACCCAGATCGGCCGCATGCACCCCGGCCAGCGCGCGGAACTGTT < 1:532411/150‑1 CATCGGCCAGCGCAATGCGCGCAATGGCCAGGTGGTGCAGGCCGGCGCCTACCTGCTGTCGATCGTGCCGGATGAAGACATCTGGGTGCAGGCCAACTTCAAGGAAACCCAGATCGGCCGCATGCACCCCGGCCAGC < 1:453339/137‑1 CATCGGCCAGCGCAATGCGCGCAATGGCCAGGTGGTGCAGGCCGGCGCCTACCTGCTGTCGATCGTGCCGGATGAAGACATCTGGGTGCAGGCCAACTTCAAGGAAACCCAGATCGGCCGCATGCACCCCGGCCAGC > 2:453339/1‑137 ATCGGCCAGCGCAATGCGCGCAATGGCCAGGTGGTGCAGGCCGGCGCCTACCTGCTGTCGATCGTGCCGGATGAAGACATCTGGGTGCAGGCCAACTTCAAGGAAACCCAGATCGGCCGCATGCACCCCGGCCAGCGCGCGGAACTGTTG > 2:71545/1‑150 CCGGCCTTCGATCGGTGTGTCGGGGTAGCTGTCGAACAACAGTTCCGCGCGCTGGCCGGGGTGCATGCGGCCGATCTGGGTTTCCTTGAAGTTGGCCTGCACCCAGATGTCTTCATCCGGCACGATCGACAGCAGGTAGGCGCCGGCCTGCACCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2238826‑2238980 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaccaTCGGCCAGCGCAATGCGCGCAATGGCCAGGTGGTGCAGGCCGGCGCCTACCTGCTGTCGATCGTGCCGGATGAAGACATCTGGGTGCAGGCCAACTTCAAGGAAACCCAGATCGGCCGCATGCACCCCGGCCAGCGCGCGGAACTGTTG < NC_002947/2239010‑2238862 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |