New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2238980	17 (0.740)	4 (0.180)	4/238	NT	17.7%	coding (800/1164 nt)	PP_1976	HlyD family secretion protein
	?	NC_002947	= 2239010	21 (0.950)					coding (770/1164 nt)	PP_1976	HlyD family secretion protein

TTCGATCGGTGTGTCGGGGTAGCTGTCGAACAACAGTTCCGCGCGCTGGCCGGGGTGCATGCGGCCGATCTGGGTTTCCTTGAAGTTGGCCTGCACCCAGATGTCTTCATCCGGCACGATCGACAGCAGGTAGGCGCCGGCCTGCACCACCTGGCCATTGCGCGCATTGCGCTGGCCGATGGTGCCGCTGATCGGGGCATGGATTTCGCAGCGGGTCAGGTTCAGTTCGGCCTGGGCCAGGTCGGTGCGGGCATTGGCGATTTGCGCATCGAGGCGCTTGAGTTCGGCGTTCAGGGCG  >  NC_002947/2238832‑2239129                                                                                                                                                     |                                                                                                                                                      ttCGATCGGTGTGTCGGGGTAGCTGTCGAACAACAGTTCCGCGCGCTGGCCGGGGTGCATGCGGCCGATCTGGGTTTCCTTGAAGTTGGCCTGCACCCAGATGTCTTCATCCGGCACGATCGACAGCAGGTAGGCGCCGGCCTGcaccac                                                                                                                                                      <  2:127985/150‑1 (MQ=255)                             aacaacAGTTCCGCGCGCTGGCCGGGGTGCATGCGGCCGATCTGGGTTTCCTTGAAGTTGGCCTGCACCCAGATGTCTTCATCCGGCACGATCGACAGCAGGTAGGCGCCGGCCTGCACCAtcggccagcgcaatgcgcgcaatggccag                                                                                                                          >  2:171735‑M1/1‑121 (MQ=255)                               caacaGTTCCGCGCGCTGGCCGGGGTGCATGCGGCCGATCTGGGTTTCCTTGAAGTTGGCCTGCACCCAGATGTCTTCATCCGGCACGATCGACAGCAGGTAGGCGCCGGCCTGCACCACCTGGCCATTGCGCGCATTGCGCTGGCCGAt                                                                                                                        >  2:71545‑M2/1‑149 (MQ=255)                                aacaGTTCCGCGCGCTGGCCGGGGTGCATGCGGCCGATCTGGGTTTCCTTGAAGTTGGCCTGCACCCAGATGTCTTCATCCGGCACGATCGACAGCAGGTAGGCGCCGGCCTGCACCAtcggccagcgcaatgcgcgcaatggccaggtg                                                                                                                       >  1:497999‑M1/1‑118 (MQ=255)                                aacaGTTCCGCGCGCTGGCCGGGGTGCATGCGGCCGATCTGGGTTTCCTTGAAGTTGGCCTGCACCCAGATGTCTTCATCCGGCACGATCGACAGCAGGTAGGCGCCGGCCTGCACCACCTGGCCATTGCGCGCATTGCGCTGGCCGAtg                                                                                                                       <  1:532411‑M2/150‑3 (MQ=255)                                         gcgcgcTGGCCGGGGTGCATGCGGCCGATCTGGGTTTCCTTGAAGTTGGCCTGCACCCAGATGTCTTCATCCGGCACGATCGACAGCAGGTAGGCGCCGGCCTGCACCAtcggccagcgcaatgcgcgcaatggccaggtggtgcaggcc                                                                                                              <  2:497999‑M1/150‑42 (MQ=255)                                            cgcTGGCCGGGGTGCATGCGGCCGATCTGGGTTTCCTTGAAGTTGGCCTGCACCCAGATGTCTTCATCCGGCACGATCGACAGCAGGTAGGCGCCGGCCTGCACCAtcggccagcgcaatgcgcgcaatggccaggtggcgcaggccggc                                                                                                           <  1:171735‑M1/150‑45 (MQ=255)                                             gcTGGCCGGGGTGCATGCGGCCGATCTGGGTTTCCTTGAAGTTGGCCTGCACCCAGATGTCTTCATCCGGCACGATCGACAGCAGGTAGGCGCCGGCCTGCACCCCCTGGCCATTGCGCGCATTGCGCTGGCCGATGGTGCCGCTGATCg                                                                                                          >  2:259245/1‑150 (MQ=255)                                             gcTGGCCGGGGTGCATGCGGCCGATCTGGGTTTCCTTGAAGTTGGCCTGCACCCAGATGTCTTCATCCGGCACGATCGACAGCAGGTAGGCGCCGGCCTGCACCACCTGGCCATTGCGCGCATTGCGCTGGCCGAtg                                                                                                                       <  1:453339‑M2/137‑3 (MQ=255)                                             gcTGGCCGGGGTGCATGCGGCCGATCTGGGTTTCCTTGAAGTTGGCCTGCACCCAGATGTCTTCATCCGGCACGATCGACAGCAGGTAGGCGCCGGCCTGCACCACCTGGCCATTGCGCGCATTGCGCTGGCCGAtg                                                                                                                       >  2:453339‑M2/1‑135 (MQ=255)                                              cTGGCCGGGGTGCATGCGGCCGATCTGGGTTTCCTTGAAGTTGGCCTGCACCCAGATGTCTTCATCCGGCACGATCGACAGCAGGTAGGCGCCGGCCTGCACCACCTGGCCATTGCGCGCATTGCGCTGGCCGATGGTGCCGCTGATCgg                                                                                                         <  2:448271/150‑1 (MQ=255)                                                                    aTCTGGGTTTCCTTGAAGTTGGCCTGCACCCAGATGTCTTCATCCGGCACGATCGACAGCAGGTAGGCGCCGGCCTGCACCACCTGGCCATTGCGCGCATTGCGCTGGCCGATGGTGCCGCTGATCGGGGCATGGATTTCGCAGCGGGTc                                                                                   >  2:547599/1‑150 (MQ=255)                                                                         ggTTTCCTTGAAGTTGGCCTGCACCCAGATGTCTTCATCCGGCACGATCGACAGCAGGTAGGCGCCGGCCTGCACCACCTGGCCATTGCGCGCATTGCGCTGGCCGATGGTGCCGCTGATCGGGGCATGGATTTCGCAGCGGGTCAGGtt                                                                              >  1:541156/1‑150 (MQ=255)                                                                                ttGAAGTTGGCCTGCACCCAGATGTCTTCATCCGGCACGATCGACAGCAGGTAGGCGCCGGCCTGCACCACCTGGCCATTGCGCGCATTGCGCTGGCCGATGGTGCCGCTGATCGGGGCATGAATTTCGCAGCGGGTCAGGTTCAGTTCg                                                                       <  2:556171/150‑1 (MQ=255)                                                                                           cTGCACCCAGATGTCTTCCTCCGGCACGATCGACAGCAGGTAGGCGCCGGCCTGCACCACCTGGCCATTGCGCGCATTGCGCTGGCCGATGGTGCCGCTGATCGGGGCATGGATTTCGCAGCGGGTCAGGTTCAGTTCGGCCTGGGCCAg                                                            >  2:869/1‑150 (MQ=255)                                                                                               aCCCAGATGTCTTCATCCGGCACGATCGACAGCAGGTAGGCGCCGGCCTGCACCACCTGGCCATTGCGCGCATTGCGCTGGCCGATGGTGCCGCTGATCGGGGCATGGATTTCGCAGCGGGTCAGGTTCAGTTCGGCCTGGGCCAGGTCg                                                        <  1:250412/150‑1 (MQ=255)                                                                                                 ccAGATGTCTTCATCCGGCACGATCGACAGCAGGTAGGCGCCGGCCTGCACCACCTGGCCATTGCGCGCATTGCGCTGGCCGATGGTGCCGCTGATCGGGGCATGGATTTCGCAGCGGGTCAGGTTCAGTTCGGCCTGGGCCAGGTCGGt                                                      >  2:110725/1‑150 (MQ=255)                                                                                                            cATCCGGCACGATCGACAGCAGGTAGGCGCCGGCCTGCACCACCTGGCCATTGCGCGCATTGCGCTGGCCGATGGTGCCGCTGATCGGGGCATGGATTTCGCAGCGGGTCAGGTTCAGTTCGGCCTGGGCCAGGTCGGTGCGGGCATTgg                                           <  1:391162/150‑1 (MQ=255)                                                                                                                  gCACGATCGACAGCAGGTAGGCGCCGGCCTGCACCACCTGGCCATTGCGCGCATTGCGCTGGCCGATGGTGCCGCTGATCGGGGCATGGATTTCGCAGCGGGTCAGGTTCAGTTCGGCCTGGGCCAGGTCGGTGCGGGCATTGGCGAttt                                     <  1:547599/150‑1 (MQ=255)                                                                                                                             agcagGTAGGCGCCGGCCTGCACCACCTGGCCATTGCGCGCATTGCGCTGGCCGATGGTGCCGCTGATCGGGGCATGGATTTCGCAGCGGGTCAGGTTCAGTTCGGCCTGGGCCAGGTCGGTGCGGGCATTGGCGATTTGCGCATCGAgg                          <  2:523911/150‑1 (MQ=255)                                                                                                                                  gTAGGCGCCGGCCTGCACCACCTGGCCATTGCGCGCATTGCGCTGGCCGATGGTGCCGCTGATCGGGGCATGGATTTCGCAGCGGGTCAGGTTCAGTTCGGCCTGGGCCAGGTCGGTGCGGGCATTGGCGATTTGCGCATCGAGGCGCtt                     <  1:110725/150‑1 (MQ=255)                                                                                                                                  gTAGGCGCCGGCCTGCACCACCTGGCCATTGCGCGCATTGCGCTGGCCGATGGTGCCGCTGATCGGGGCATGGATTTCGCAGCGGGTCAGGTTCAGTTCGGCCTGGGCCAGGTCGGTGCGGGCATTGGCGATTTGCGCATCGAGGCGCtt                     >  2:24972/1‑150 (MQ=255)                                                                                                                                        gcCGGCCTGCGCCACCTGGCCATTGCGCGCATTGCGCTGGCCGAtggtgcaggccggcgcctacctgctgtcgatcgtgccggatgaagacatctgggtgcaggccaacttcaaggaaacccagatcggccgcatgcaccccggccagcg               <  1:171735‑M2/150‑107 (MQ=255)                                                                                                                                        gcCGGCCTGCACCACCTGGCCATTGCGCGCATTGCGCTGGCCGATGGTGCCGCTGATCGGGGCATGGATTTCGCAGCGGGTCAGGTTCAGTTCGGCCTGGGCCAGGTCGGTGCGGGCATTGGCGATTTGCGCATCGAGGCGCTTGAGTTc               >  2:333180/1‑150 (MQ=255)                                                                                                                                        gcCGGCCTGCACCACCTGGCCATTGCGCGCATTGCGCTGGCCGATGGTGCCGCTGATCGGGGCATGGATTTCGCAGCGGGTCAGGTTCAGTTCGGCCTGGGCCAGGTCGGTGCGGGCATTGGCGATTTGCGCATCGAGGCGCTTGAGTTc               >  2:195706/1‑150 (MQ=255)                                                                                                                                           ggCCTGCACCACCTGGCCATTGCGCGCATTGCGCTGGCCGAtggtgcaggccggcgcctacctgctgtcgatcgtgccggatgaagacatctgggtgcaggccaacttcaaggaaacccagatcggccgcatgcaccccggccagcgcgc            <  2:497999‑M2/150‑110 (MQ=255)                                                                                                                                              cTGCACCACCTGGCCATTGCGCGCATTGCGCTGGCCGATGGTGCCGCTGATCGGGGCATGGATTTCGCAGCGGGTc                                                                                   <  2:3239/76‑1 (MQ=255)                                                                                                                                              cTGCACCACCTGGCCATTGCGCGCATTGCGCTGGCCGATGGTGCCGCTGATCGGGGCATGGATTTCGCAGCGGGTc                                                                                   >  1:3239/1‑76 (MQ=255)                                                                                                                                                    caccTGGCCATTGCGCGCATTGCGCTGGCCGAtggtgcaggccggcgcctacctgctgtcgatcgtgccggatgaagacatctgggtgcaggccaacttcaaggaaacccagatcggccgcatgcaccccggccagcgcgcggaactgtt   >  1:497999‑M2/1‑32 (MQ=255)                                                                                                                                                    cAtcggccagcgcaatgcgcgcaatggccaggtggtgcaggccggcgcctacctgctgtcgatcgtgccggatgaagacatctgggtgcaggccaacttcaaggaaacccagatcggccgcatgcaccccggccagcgcgcggaactgtt   <  1:532411‑M1/150‑149 (MQ=255)                                                                                                                                                    cAtcggccagcgcaatgcgcgcaatggccaggtggtgcaggccggcgcctacctgctgtcgatcgtgccggatgaagacatctgggtgcaggccaacttcaaggaaacccagatcggccgcatgcaccccggccagc                >  2:453339‑M1/1‑2 (MQ=255)                                                                                                                                                    cAtcggccagcgcaatgcgcgcaatggccaggtggtgcaggccggcgcctacctgctgtcgatcgtgccggatgaagacatctgggtgcaggccaacttcaaggaaacccagatcggccgcatgcaccccggccagc                <  1:453339‑M1/137‑136 (MQ=255)                                                                                                                                                     atcggccagcgcaatgcgcgcaatggccaggtggtgcaggccggcgcctacctgctgtcgatcgtgccggatgaagacatctgggtgcaggccaacttcaaggaaacccagatcggccgcatgcaccccggccagcgcgcggaactgttg  >  2:71545‑M1/1‑1 (MQ=255)                                                                                                                                                     accTGGCCATTGCGCGCATTGCGCTGGCCGATGGTGCCGCTGATCGGGGCATGGATTTCGCAGCGGGTCAGGTTCAGTTCGGCCTGGGCCAGGTCGGTGCGGGCATTGGCGATTTGCGCATCGAGGCGCTTGAGTTCGGCGTTCAGGGCg  >  1:241343/1‑150 (MQ=255)                                                                                                                                                     |                                                                                                                                                      TTCGATCGGTGTGTCGGGGTAGCTGTCGAACAACAGTTCCGCGCGCTGGCCGGGGTGCATGCGGCCGATCTGGGTTTCCTTGAAGTTGGCCTGCACCCAGATGTCTTCATCCGGCACGATCGACAGCAGGTAGGCGCCGGCCTGCACCACCTGGCCATTGCGCGCATTGCGCTGGCCGATGGTGCCGCTGATCGGGGCATGGATTTCGCAGCGGGTCAGGTTCAGTTCGGCCTGGGCCAGGTCGGTGCGGGCATTGGCGATTTGCGCATCGAGGCGCTTGAGTTCGGCGTTCAGGGCG  >  NC_002947/2238832‑2239129

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.