New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2359601	28 (1.210)	4 (0.180)	3/238	NT	12.8%	coding (516/924 nt)	PP_2074	LysR family transcriptional regulator
	?	NC_002947	= 2359606	28 (1.270)					coding (521/924 nt)	PP_2074	LysR family transcriptional regulator

ACGTGGTGGTGGTCGTGCAGCATGTGGACTACTGGCGCATTCCGGACCTGCTGGCGGCGGGCGACGTGACGGTGGGTATCAGCCAGACCAAGGGCCTGCCCGCCAATGCCAAACGCAAGGTGCTACGCACCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2359468‑2359601 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accctgGCTTGCAGGGTGCGTAGCACCTTGCGTTTGGCATTGGCGGGCAGGCCCTTGGTCTGGCTGATACCCACCGTCACGTCGCCCGCCGCCAGCAGGTCCGGAATGCGCCAGTAGTCCACATGCTGCAC  <  NC_002947/2359606‑2359482                                                                                                                                                                                                                                                                     ACGTGGTGGTGGTCGTGCAGCATGTGGACTACTGGCGCATTCCGGACCTGCTGGCGGCGGGCGACGTGACGGTGGGTATCAGCCAGACCAAGGGCCTGCCCGCCAATGCCAAACGCAAGGTGCTACGCACCCTGGCTTGCAGGGTGCGTA                                                                                                               <  1:1405/150‑1                                                                                          AAGGGCCTGCCCGCCAATGCCAAACGCAAGGTGCTACGCACCCTGGCTTGCAGGGTGCGTA                                                                                                               <  1:378049/61‑1                                                                                          AAGGGCCTGCCCGCCAATGCCAAACGCAAGGTGCTACGCACCCTGGCTTGCAGGGTGCGTA                                                                                                               >  2:378049/1‑61                                                                                                              CAAACGCAAGGTGCTACGCACCCTGCAAGCCAGGGTGCGTAGCACCTTGCGTTTGGCATTGGCGGGCAGGCCCTTGGTCTGGCTGATACCCACCGTCACGTCGCCCGCCGCCAGCAGGTCCGGAATGCGCCAGTAGTCCACATGCTGCAC  >  2:544041/1‑150                                                                                                                                                                                                                                                                     ACGTGGTGGTGGTCGTGCAGCATGTGGACTACTGGCGCATTCCGGACCTGCTGGCGGCGGGCGACGTGACGGTGGGTATCAGCCAGACCAAGGGCCTGCCCGCCAATGCCAAACGCAAGGTGCTACGCACCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2359468‑2359601 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accctgGCTTGCAGGGTGCGTAGCACCTTGCGTTTGGCATTGGCGGGCAGGCCCTTGGTCTGGCTGATACCCACCGTCACGTCGCCCGCCGCCAGCAGGTCCGGAATGCGCCAGTAGTCCACATGCTGCAC  <  NC_002947/2359606‑2359482

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.