New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3152372	36 (1.560)	3 (0.140)	3/232	NT	8.1%	coding (484/882 nt)	PP_2768	branched‑chain amino acid ABC transporter permease
	?	NC_002947	= 3152388	35 (1.630)					coding (500/882 nt)	PP_2768	branched‑chain amino acid ABC transporter permease

CCAGGCCTTATGGGGCGCCCAGGTTCACGGCCTGGAGCTGGCCATCAGCGACGCCCCGCTGGAGCTGGGCGGCCTGCTGCTGTCGCAGTTCGACCTGTTCGCCGCCGCAACGGCGGCGGCCCTGGTGGTGCTTCTGTCCTTGCTGTTCAACCGCACGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3152215‑3152372 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accgcacgcAGCGCCAGGCCGATGCGCGTGCGGTTGAACAGCAAGGACAGAAGCACCACCAGGGCCGCCGCCGTTGCGGCGGCGAACAGGTCGAACTGCGACAGCAGCAGGCCGCCCAGCTCCAGCGGGGCGTCGCTGATGGCCAGCTCCAGG  <  NC_002947/3152388‑3152245                                                                                                                                                                                                                                                                                                                CCAGGCCTTATGGGGCGCCCAGGTTCACGGCCTGGAGCTGGCCATCAGCGACGCCCCGCTGGAGCTGGGCGGCCTGCTGCTGTCGCAGTTCGACCTGTTCGCCGCCGCAACGGCGGCGGCCCTGGTGGTGCTTCTGTCCTTGCTGTTCAA                                                                                                                                                          <  1:582066/150‑1  CAGGCCTTATGGGGCGCCCAGGTTCACGGCCTGGAGCTGGCCATCAGCGACGCCCCGCTGGAGCTGGGCGGCCTGCTGCTGTCGCAGTTCGACCTGTTCGCCGCCGCAACGGCGGCGGCCCTGGTGGTGCTTCTGTCCTTGCTGTTCAAC                                                                                                                                                         >  2:358648/1‑150  CAGGCCTTATGGGGCGCCCAGGTTCACGGCCTGGAGCTGGCCATCAGCGACGCCCCGCTGGAGCTGGGCGGCCTGCTGCTGTCGCAGTTCGACCTGTTCGCCGCCGCAACGGCGGCGGCCCTGGTGGTGCTTCTGTCCTTGCTGTTCAAC                                                                                                                                                         >  2:373623/1‑150            GGGGCGCCCAGGTTCACGGCCTGGAGCTGGCCATCAGCGACGCCCCGCTGGAGCTGGGCGGCCTGCTGCTGTCGCAGTTCGACCTGTTCGCCGCCGCAACGGCGGCGGCCCTGGTGGTGCTTCTGTCCTTGCTGTTCAACCGCACGCAGC                                                                                                                                               >  2:139220/1‑150                                             TCAGCGACGCCCCGCTGGAGCTGGGCGGCCTGCTGCTGTCGCAGTTCGACCTGTTCGCCGCCGCAACGGCGGCGGCCCTGGTGGTGCTTCTGTCCTTGCTGTTCAACCGCACGCAGCGCCAGGCCGATGCGCGTGCGGTTGAACAGCAAG                                                                                                              <  1:139220/150‑1                                                                      CGGCCTGCTGCTGTCGCAGTTCGACCTGTTCGCCGCCGCAACGGCGGCGGCCCTGGTGGTGCTTCTGTCCTTGCTGTTCAACCGCACGCAGCGCCAGGCCGATGCGCGTGCG                                                                                                                           <  1:571059/112‑1                                                                      CGGCCTGCTGCTGTCGCAGTTCGACCTGTTCGCCGCCGCAACGGCGGCGGCCCTGGTGGTGCTTCTGTCCTTGCTGTTCAACCGCACGCAGCGCCAGGCCGATGCGCGTGCG                                                                                                                           >  2:571059/1‑112                                                                                                                                                         GCACGCAGCGCCAGGCCGATGCGCGTGCGGTTGAACAGCAAGGACAGAAGCACCACCAGGGCCGCCGCCGTTGCGGCGGCGAACAGGTCGAACTGCGACAGCAGCAGGCCGCCCAGCTCCAGCGGGGCGTCGCTGATGGCCAGCTCCAGG  <  2:539373/150‑1                                                                                                                                                                                                                                                                                                                CCAGGCCTTATGGGGCGCCCAGGTTCACGGCCTGGAGCTGGCCATCAGCGACGCCCCGCTGGAGCTGGGCGGCCTGCTGCTGTCGCAGTTCGACCTGTTCGCCGCCGCAACGGCGGCGGCCCTGGTGGTGCTTCTGTCCTTGCTGTTCAACCGCACGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3152215‑3152372 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accgcacgcAGCGCCAGGCCGATGCGCGTGCGGTTGAACAGCAAGGACAGAAGCACCACCAGGGCCGCCGCCGTTGCGGCGGCGAACAGGTCGAACTGCGACAGCAGCAGGCCGCCCAGCTCCAGCGGGGCGTCGCTGATGGCCAGCTCCAGG  <  NC_002947/3152388‑3152245

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.