New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3152372	36 (1.560)	3 (0.140)	3/232	NT	8.1%	coding (484/882 nt)	PP_2768	branched‑chain amino acid ABC transporter permease
	?	NC_002947	= 3152388	35 (1.630)					coding (500/882 nt)	PP_2768	branched‑chain amino acid ABC transporter permease

ATGGGGCGCCCAGGTTCACGGCCTGGAGCTGGCCATCAGCGACGCCCCGCTGGAGCTGGGCGGCCTGCTGCTGTCGCAGTTCGACCTGTTCGCCGCCGCAACGGCGGCGGCCCTGGTGGTGCTTCTGTCCTTGCTGTTCAACCGCACGCGCATCGGCCTGGCGCTGCGTGCGGTGGCCGACGATCCCCGCGCGGCGATGAGCGTCGGTATCCGCCTGCCGAGGGTGTGGGCGGTGGTCTGGGCGGTGGCCGGGTTTGTCGGGTTGGTGGCCGGGCTGCTCTGGGGCGCACGCC  >  NC_002947/3152224‑3152516                                                                                                                                                     |                                                                                                                                                 aTGGGGCGCCCAGGTTCACGGCCTGGAGCTGGCCATCAGCGACGCCCCGCTGGAGCTGGGCGGCCTGCTGCTGTCGCAGTTCGACCTGTTCGCCGCCGCAACGGCGGCGGCCCTGGTGGTGCTTCTGTCCTTGCTGTTCAACCGCAcgcg                                                                                                                                                 >  2:65212/1‑150 (MQ=255)   ggggCGCCCAGGTTCACGGCCTGGAGCTGGCCATCAGCGACGCCCCGCTGGAGCTGGGCGGCCTGCTGCTGTCGCAGTTCGACCTGTTCGCCGCCGCAACGGCGGCGGCCCTGGTGGTGCTTCTGTCCTTGCTGTTCAACCGCACGCagc                                                                                                                                               >  2:139220‑M1/1‑147 (MQ=255)           cAGGTTCACGGCCTGGAGCTGGCCATCAGCGACGCCCCGCTGGAGCTGGGCGGCCTGCTGCTGTCGCAGTTCGACCTGTTCGCCGCCGCAACGGCGGCGGCCCTGGTGGTGCTTCTGTCCTTGCTGTTCAACCGCACGCGCATCGGccac                                                                                                                                       >  1:217526/1‑148 (MQ=255)              gTTCACGGCCTGGAGCTGGCCATCAGCGACGCCCCGCTGGAGCTGGGCGGCCTGCTGCTGTCGCAGTTCGACCTGTTCGCCGCCGCAACGGCGGCGGCCCTGGTGGTGCTTCTGTCCTTGCTGTTCAACCGCACGCGCCTCGGCCTGgcg                                                                                                                                    >  2:61430/1‑150 (MQ=255)                      ccTGGAGCTGGCCATCAGCGACGCCCCGCTGGAGCTGGGCGGCCTGCTGCTGTCGCAGTTCGACCTGTTCGCCGCCGCAACGGCGGCGGCCCTGGTGGTGCTTCTGTCCTTGCTGTTCAACCGCACGCGCATCGGCCTGGCGCTgcgtgc                                                                                                                            <  2:539373‑M2/150‑7 (MQ=255)                                gCCATCAGCGACGCCCCGCTGGAGCTGGGCGGCCTGCTGCTGTCGCAGTTCGACCTGTTCGCCGCCGCAACGGCGGCGGCCCTGGTGGTGCTTCTGTCCTTGCTGTTCAACCGCACGCGCATCGGc                                                                                                                                          >  2:581000/1‑126 (MQ=255)                                gCCATCAGCGACGCCCCGCTGGAGCTGGGCGGCCTGCTGCTGTCGCAGTTCGACCTGTTCGCCGCCGCAACGGCGGCGGCCCTGGTGGTGCTTCTGTCCTTGCTGTTCAACCGCACGCGCATCGGc                                                                                                                                          <  1:581000/126‑1 (MQ=255)                                gCCATCAGCGACGCCCCGCTGGAGCTGGGCGGCCTGCTGCTGTCGCAGTTCGACCTGTTCGCCGCCGCAACGGCGGCGGCCCTGGTGGTGCTTCTGTCCTTGCTGTTCAACCGCACGCGCATCGGCCTGGCGCTGCGTGCGGTGGCcgac                                                                                                                  >  1:589381/1‑150 (MQ=255)                                    tCAGCGACGCCCCGCTGGAGCTGGGCGGCCTGCTGCTGTCGCAGTTCGACCTGTTCGCCGCCGCAACGGCGGCGGCCCTGGTGGTGCTTCTGTCCTTGCTGTTCAACCGCACGCagcgccaggccgatgcgcgtgcggttgaacagcaag                                                                                                              <  1:139220‑M1/150‑37 (MQ=255)                                              cccGCTGGAGCTGGGCGGCCTGCTGCTGTCGCAGTTCGACCTGTTCGCCGCCGCAACGGCGGCGGCCCTGGTGGTGCTTCTGTCCTTGCTGTTCACCCGGACGCGCATCGGCCTGGCGCGGCGTGCGGTGGCCGACGATCCCCGCgcggc                                                                                                    <  1:539373/150‑1 (MQ=255)                                              cccGCTGGAGCTGGGCGGCCTGCTGCTGTCGCAGTTCGACCTGTTCGCCGCCGCAACGGCGGCGGCCCTGGTGGTGCTTCTGTCCTTGCTGTTCAACCGCACGCGCATCGGCCTGGCGCTGCGTGCGGTGGCCGACGATCCCCGCgcggc                                                                                                    >  2:311651/1‑150 (MQ=255)                                               ccGCTGGAGCTGGGCGGCCTGCTGCTGTCGCAGTTCGACCTGTTCGCCGCCGCAACGGCGGCGGCCCTGGTGGTGCTTCTGTCCTTGCTGTTCAACCGCACGCGCATCGGCCTGGCGCTGCGTGCGGTGGCCGACGATCCCCGCgcggcg                                                                                                   >  2:147614/1‑150 (MQ=255)                                                cGCTGGAGCTGGGCGGCCTGCTGCTGTCGCAGTTCGACCTGTTCGCCGCCGCAACGGCGGCGGCCCTGGTGGTGCTTCTGTCCTTGCTGTTCAACCGCACGCGCATCGGCCTGGCGCTGCGTGCGGTGGCTGACGATCCCCGCGCGGCGa                                                                                                  >  2:404592/1‑150 (MQ=255)                                                cGCTGGAGCTGGGCGGCCTGCTGCTGTCGCAGTTCGACCTGTTCGCCGCCGCAACGGCGGCGGCCCTGGTGGTGCTTCTGTCCTTGCTGTTCAACCGCACGCGCATCGGCCTGGCGCTGCGTGCGGTGGCCGACGATCCCCGCGCGGCGa                                                                                                  <  1:404592/150‑1 (MQ=255)                                                 gCTGGAGCTGGGCGGCCTGCTGCTGTCGCAGTTCGACCTGTTCGCCGCCGCAACGGCGGCGGCCCTGGTGGTGCTTCTGTCCTTGCTGTTCAACCGCACGCGCATCGGCCTGGCGCTGCGTGCGGTGGCCGACGATCCCCGCGCGGCGAt                                                                                                 <  2:167407/150‑1 (MQ=255)                                                 gCTGGAGCTGGGCGGCCTGCTGCTGGCGCAGTTCGACCTGTTCGCCGCCGCAACGGCGGCGGCCCGGGTGGTGCTTCTGTCCTTGCTGTTCAACCGCACGCGCATCGGCCTGGCGCTGCGTGCGGTGGCCGACGATCCCCGCCCGGCGAt                                                                                                 >  1:513452/1‑150 (MQ=255)                                                       gCTGGGCGGCCTGCTGCTGTCGCAGTTCGACCTGTTCGCCGCCGCAACGGCGGCGGCCCTGGTGGTGCTTCTGTCCTTGCTGTTCAACCGCACGCGCATCGGCCTGGCGCTGCGTGCGGTGGCCGACGATCCCCGCGCGGCGATGAGCGt                                                                                           <  1:65212/150‑1 (MQ=255)                                                          gggCGGCCTGCTGCTGTCGCAGTTCGACCTGTTCGCCGCCGCAACGGCGGCGGCCCTGGTGGTGCTTCTGTCCTTGCTGTTCAACCGCACGCGCATCGGCCTGGCGCTGCGTGCGGTGGCCGACGATCCCCGCGCGGCGATGAGCGTCgg                                                                                        <  2:589381/150‑1 (MQ=255)                                                             cggcCTGCTGCTGTCGCAGTTCGACCTGTTCGCCGCCGCAACGGCGGCGGCCCTGGTGGTGCTTCTGTCCTTGCTGTTCAACCGCACGCagcgccaggccgatgcgcgtgcg                                                                                                                           >  2:571059‑M1/1‑89 (MQ=255)                                                             cggcCTGCTGCTGTCGCAGTTCGACCTGTTCGCCGCCGCAACGGCGGCGGCCCTGGTGGTGCTTCTGTCCTTGCTGTTCAACCGCACGCagcgccaggccgatgcgcgtgcg                                                                                                                           <  1:571059‑M1/112‑24 (MQ=255)                                                                 ctgatggtgCCGCAGATCGCCCTGTTCGCCGTCGCAACGGCGGCGGCCCTGGTGGTGCTTCTGTCCTTGCTGTTCAACCGCACGCGCATCGGTCTGGCGCTGCGTGCGGTGGCCGACGATCCCCGCGCGGCGATGAGCGTCGGTATCCGc                                                                                 <  2:192659/150‑1 (MQ=39)                                                                        tgTCGCAGTTCGACCTGTTCGCCGCCGCAACGGCGGCGGCCCTGGTGGTGCTTCTGTCCTTGCTGTTCAACCGCACGCGCATCGGCCTGGCGCTGCGTGCGGTGGCCGACGATCCCCGCGCGGCGATGAGCGTCGGTATCCGCCTGCCGa                                                                          <  1:311651/150‑1 (MQ=255)                                                                          tCGCAGTTCGACCTGTTCGCCGCCGCAACGGCGGCGGCCCTGGTGGTGCTTCTGTCCTTGCTGTTCAACCGCACGCGCATCGGCCTGGCGCTGCGTGCGGTGGCCGACGATCCCCGCGCGGCGATGAGCGTCGGTATCCGCCGGCCTAgg                                                                        <  2:289922/150‑1 (MQ=255)                                                                            gCAGTTCGACCTGTTCGCCGCCGCAACGGCGGCGGCCCTGGTGGTGCTTCTGTCCTTGCTGTTCAACCGCACGCGCATCGGCCTGGCGCTGCGTGCGGTGGCCGACGATCCCCGCGCGGCGATGAGCGTCGGTATCCGCCTGCCGAGGgt                                                                      >  1:454547/1‑150 (MQ=255)                                                                              aGTTCGACCTGTTCGCCGCCGCAACGGCGGCGGCCCTGGTGGTGCTTCTGTCCTTGCTGTTCAACCGCACGCGCATCGGCCTGGCGCTGCGTGCGGTGGCCGACGATCCCCGCGCGGCGATGAGCGTCGGTATCCGCCTGCCGAGGgtgt                                                                    <  1:373623/150‑1 (MQ=255)                                                                                ttCGACCTGTTCGCCGCCGCAACGGCGGCGGCCCTGGTGGTGCTTCTGTCCTTGCTGTTCAACCGCACGCGCATCGGCCTGGCGCTGCGTGCGGTGGCCGACGATCCCCGCGCGGCGATGAGCGTCGGTATCCGCCTGCCGAGGGTGTgg                                                                  <  1:103860/150‑1 (MQ=255)                                                                                   gACCTGTTCGCCGCCGCAACGGCGGCGGCCCTGGTGGTGCTTCTGTCCTTGCTGTTCAACCGCACGCGCATCGGCCTGGCGCTGCGTGCGGTGGCCGACGATCCCCGCGCGGCGATGAGCGTCGGTATCCGCCTGCCGAGGGTGTGGGCg                                                               <  1:572986/150‑1 (MQ=255)                                                                                    aCCTGTTCGCCGCCGCAACGGCGGCGGCCCTGGTGGTGCTTCTGTCCTTGCTGTTCAACCGCACGCGCATCGGCCTGGCGCTGCGTGCGGTGGCCGACGATCCCCGCGCGGCGATGAGCGTCGGTATCCGCCTGCCGGGGGTGTGGGCgg                                                              <  2:551076/150‑1 (MQ=255)                                                                                      cTGTTCGCCACCGCAACGGCGGCGGCCCTGGTGGTGCTTCTGTCCTTGCTGTTCAACCGCACGCGCATCGGCCTGGCGCTGCGTGCGGTGGCCGACGATCCCCGCGCGGCGATGAGCGTCGGTATCCGCCTGCCGAGGGTGTGGGCggtg                                                            >  1:389274/1‑150 (MQ=255)                                                                                                       ggcggcggcCCTGGTGGTGCTTCTGTCCTTGCTGTTCAACCGCATGCGCATCGGCCTGGCGCTGCGTCGCCCGGCTGACTATCCCCGCGCGGCGATGAGCGTCGGTATCCGCCTGCCGAGGGTGTGGGCGGTGGTCTGGGCGGTGGCCgg                                           <  1:346373/150‑1 (MQ=255)                                                                                                        gcggcggcCCTGGTGGTGCTTCTGTCCTTGCTGTTCAACCGCACGCGCATCGGCCTGGCGCTGCGTGCGGTGGCCGACGATCCCCGCGCGGCGATGAGCGTCGGTATCCGCCTGCCGAGGGTGTGGGCGGTGGTCTGGGCGGTGGCCggg                                          <  1:358648/150‑1 (MQ=255)                                                                                                                ccaggtggtGCTTCTGTCCTTGCTGTTCAACCGCACGCGCATCGGCCTGGCGCTGCGTGCGGTGGCCGACGATCCCCGCGCGGCGATGAGCGTCGGTATCCGCCTGCCGCGGGGGTGGGCGGGGATCTGGGCGGTGGCCGGGTGTGTCgg                                  >  2:33105/4‑150 (MQ=255)                                                                                                                  tggtggTGCTTCTGTCCTTGCTGTTCAACCGCACGCGCATCGGCCTGGCGCTGCGTGCGGTGGCCGACGATCCCCGCGCGGCGATGAGCGTCGGTATCCGCCTGCCGAGGGTGTGGGCGGTGGTCTGGGCGGTGGCCGGGTTTGTCGGGt                                <  2:454547/150‑1 (MQ=255)                                                                                                                        tgCTTCTGTCCTTGCTGTTCAACCGCACGCGCATCGGCCTGGCGCTGCGTGCGGTGGCCGACGATCCCCGCGCGGCGATGAGCGTCGGTATCCGCCTGCCGAGGGTGTGGGCGGTGGTCTGGGCGGTGGCCGGGTTTGTCGGGTtggtgg                          <  2:513452/150‑1 (MQ=255)                                                                                                                            tCTGTCCTTGCTGTTCAACCGCACGCGCATCGGCCTGGCGCTGCGTGCGGTGGCCGACGATCCCCGCGCGGCGATGAGCGTCGGTATCCGCCTGCCGAGGGTGTGGGCGGTGGTCTGGGCGGTGGCCGGGTGTGTCGGGTTGGTGGCCgg                      >  1:493963/1‑150 (MQ=255)                                                                                                                                  cTTGCTGTTCAACCGCACGCGCATCGGCCTGGCGCTgcgtgcggttgaacagcaaggacagaagcaccaccagggccgccgccgttgcggcggcgaacaggtcgaactgcgacagcagcaggccgcccagctccagcggggcgtcgctga                <  1:139220‑M2/150‑115 (MQ=255)                                                                                                                                  cTTGCTGTTCAACCGCACGCGCATCGGCCTGGCGCTGCGTGCGGTGGCCGACGATCCCCGCGCGGCGATGAGCGTCGGTATCCGCCTGCCGAGGGTGTGGGCGGTGGTCTGGGCGGTGGCCGGGTTTGTCGGGTTGGTGGCCGGgctgct                >  1:162469/1‑150 (MQ=255)                                                                                                                                            aaCCGCACGCGCATCGGCCTGGCGCTGCGTGCGGTGGCCGGCGATCCCCGCGCGGCGATGAGCGTCGGTATCCGCCTGCCGAGGGTGTGGGCGGTGGTCTGGGCGGTGGCCGGGTTTGTCGGTTTGGTGGCCGGGCTGCTCTGGGGCGCa      <  1:33105/150‑1 (MQ=255)                                                                                                                                             aCCGCACGCGCATCGGCCTGGCGCTGCGTGCGGTGGCCGACGATCCCCGCGCGGCGATGAGCGTCGGTATCCGCCTGCCGAGGGTGTGGGCGGTGGTCTGGGCGGTGGCCGGGTTTGTCg                                   <  2:588656/120‑1 (MQ=255)                                                                                                                                             aCCGCACGCGCATCGGCCTGGCGCTGCGTGCGGTGGCCGACGATCCCCGCGCGGCGATGAGCGTCGGTATCCGCCTGCCGAGGGTGTGGGCGGTGGTCTGGGCGGTGGCCGGGTTTGTCg                                   >  1:588656/1‑120 (MQ=255)                                                                                                                                             aCCGCACGCGCATCGGCCTGGCGCTGCGTGCGGTGGCCGACGATCCCCGCGCGGCGATGAGCGTCGGTATCCGCCTGCCGAGGGTGTGGGCGGTGGTCTGGGCGGTGGCCGGGTTTGTCGGGTTGGTGGCCGGGCTGCTCTGGGGCGCAc     >  2:418798/1‑150 (MQ=255)                                                                                                                                              ccGCACGCGCATCGGCCTGGCGCTGCGTGCGGTGGCCGACGATCCCCGCGCGGCGATGAGCGTCGGTATCCGCCTGCCGAGGGTGTGGGCGGTGGTCTGGGCGGTGGCCGGGTTTGTCgg                                  <  1:227264/120‑1 (MQ=255)                                                                                                                                              ccGCACGCGCATCGGCCTGGCGCTGCGTGCGGTGGCCGACGATCCCCGCGCGGCGATGAGCGTCGGTATCCGCCTGCCGAGGGTGTGGGCGGTGGTCTGGGCGGTGGCCGGGTTTGTCgg                                  >  2:227264/1‑120 (MQ=255)                                                                                                                                               cGCACGCGCATCGGCCTGGCGCTgcgtgcggttgaacagcaaggacagaagcaccaccagggccgccgccgttgcggcggcgaacaggtcgaactgcgacagcagcaggccg                                         <  1:571059‑M2/112‑90 (MQ=255)                                                                                                                                               cGCACGCGCATCGGCCTGGCGCTgcgtgcggttgaacagcaaggacagaagcaccaccagggccgccgccgttgcggcggcgaacaggtcgaactgcgacagcagcaggccg                                         >  2:571059‑M2/1‑23 (MQ=255)                                                                                                                                                gcacgcagcgccaggccgatgcgcgtgcggttgaacagcaaggacagaagcaccaccagggccgccgccgttgcggcggcgaacaggtcgaactgcgacagcagcaggccgcccagctccagcggggcgtcgctgatggccagctccagg  <  2:539373‑M1/150‑145 (MQ=255)                                                                                                                                                     |                                                                                                                                                 ATGGGGCGCCCAGGTTCACGGCCTGGAGCTGGCCATCAGCGACGCCCCGCTGGAGCTGGGCGGCCTGCTGCTGTCGCAGTTCGACCTGTTCGCCGCCGCAACGGCGGCGGCCCTGGTGGTGCTTCTGTCCTTGCTGTTCAACCGCACGCGCATCGGCCTGGCGCTGCGTGCGGTGGCCGACGATCCCCGCGCGGCGATGAGCGTCGGTATCCGCCTGCCGAGGGTGTGGGCGGTGGTCTGGGCGGTGGCCGGGTTTGTCGGGTTGGTGGCCGGGCTGCTCTGGGGCGCACGCC  >  NC_002947/3152224‑3152516

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.