| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3464300 = | 23 (1.000) | 6 (0.320) | 5/202 | NT | 24.2% | coding (101/1929 nt) | PP_3078 | ABC transporter substrate‑binding protein |
| ? | NC_002947 | 3464387 = | 19 (1.020) | coding (14/1929 nt) | PP_3078 | ABC transporter substrate‑binding protein | |||||
GCCCGGTGAAGACCCAGTTCGGCTACCACCTGCTGGAAGTGACCAGCCGCCAGGACTGATTCACCCCTCCCGGTGATCAGCCCCCCTGTGGGAGCGGGTTTACCCGCGAAGAGGCCAGACCAGACAACCTCGTTGCCTGCTCCGACGCATTCGCGGGTAAACCCGCTCCCACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3464472‑3464300‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggtaaacccgctcccacaGGGGGGCTGATCACCGGGAGGGGTGAATCAGTCCTGGCGGCTGGTCACTTCCAGCAGGTGGTAGCCGAACTGGGTCTTCACCGGGCCTTGCACGGTGTTGACCGGTGCGCTGAAGACCACGGTGTCGAATTCCTTGACCATCTGGCCTG > NC_002947/3464387‑3464535 GCCCGGTGAAGACCCAGTTCGGCTACCACCTGCTGGAAGTGACCAGCCGCCAGGACTGATTCACCCCTCCCAGAGATCGGCCCCCCTGTGGGAGCGGGTATATAGGCATAGAGGCCAGACCAGACAACCTCGTTGCCTGCTCCGACGCAT > 1:599076/1‑150 CCGGTGAAGACCCAGTTCGGCTACCACCTGCTGGAAGTGACCAGCCGCCAGGACTGATTCACCCCTCCCGGTGATCAGCCCCCCTGTGGGAGCGGGTTTACCCGCGAAGAGGCCAGACCAGACAACCTCGTTGCCTGCTCCGACGCATTC > 1:410440/1‑150 GTGAAGACCCAGTTCGGCTACCACCTGCTGGAAGTGACCAGCCGCCAGGACTGATTCACCCCTCCCGGTGATCAGCCCCCCTGTGGGAGCGGGTTTACCCGCGAAGAGCCCAGACCAGACAACCTCCTTGCCTGCTCCGACGCATTCGCG > 2:410148/1‑150 TGAAGACCCAGTTCGGCTACCACCTGCTGGAAGTGACCAGCCGCCAGGACTGATTCACCCCTCCCGGTGATCAGCCCCCCTGTGGGAGCGGGTTTACCCGCGAAGAGGCCAGACCAGACAACCTCGTTGCCTGCTCCGACGCATTCGCGG < 2:410440/150‑1 GTTCGGCTACCACCTGCTGGAAGTGACCAGCCGCCAGGACTGATTCACCCCTCCCAGTGATCAGCCCCCCTGTGGGAGCGGGTTTACCCGCGAAGAGGCCAGACCAGACAACCTCGTTGCCTGCTCCGACGCATTCTCGGGGAAACCCGC > 2:161698/1‑150 CGGCTACCACCTGCTGGAAGTGACCAGCCGCCAGGACTGATTCACCCCTCCCGGTGATCAGCCCCCCTGTGGGAGCGGGTTTACCCGCGAAGAGGCCAGACCAGACAACCTCGTTGCCTGCTCCGACGCATTCGCGGGTAAACCCGCTCC < 1:30336/150‑1 CCCCCCTGTGGGAGCGGGTTTACCCGCGAAGAGGCCAGACCAGACAACCTCGTTGCCTGCTCCGACGCATTCGCGGGTAAACCCGCTCCCACAGGGGGGCTGATCACCGGGAGGGGTGAATCAGTCCTGGCGGCTGGTCACTTCCAGCAG > 1:159648/1‑150 GTTTACCCGCGAAGAGGCCAGACCAGACAACCTCGTTGCCTGCTCCGACGCATTCGCGGGTAAACCCGCTCCCACAGGGGGGCTGATCACCGGGAGGGGTGAATCAGTCCTGGCGGCTGGTCACTTCCAGCAGGTGGTAGCCGAACTGGG > 1:396325/1‑150 CCGCGAAGAGGCCAGACCAGACAACCTCGTTGCCTGCTCCGACGCATTCGCGGGTAAACCCGCTCCCACAGGGGGGCTGATCACCGGGAGGGGTGAATCAGTCCTGGCGGCTGGTCACTTCCAGCAGGTGGTAGCCGAACTGGGTCTTCA > 1:181899/1‑150 CCAGACAACCTCGTTGCCTGCTCCGACGCATTCGCGGGTAAACCCGCTCCCACAGGGGGGCTGATCACCGGGAGGGGTGAATCAGTCCTGGCGGCTGGTCACTTCCAGCAGGTGGTAGCCGAACTGGGTCTTCACCGGGCCTTGCACGGT < 2:396325/150‑1 acCAACCTCGTTGCCTGCTCCGACGCATTCGCGGGTAAACCCTCTCCCACAGGGGGGCTGATCACCGGGAGGGGTGAATCAGTCCTGGCGGCTGGTCACTTCCAGCAGGTGGTAGCCGAACTGGGTCTTCACCGGGCCTTGCACGGTGTT < 2:181899/148‑1 GACAACCTCGTTGCCTGCTCCGACGCATTCGCGGGTAAACCCGCTCCCACAGGGGGGCTGATCACCGGGAGGGGTGAATCAGTCCTGGCGGCTGGTCACTTCCAGCAGGTGGTAGCCGAACCGGGTCTTCACCGGGCCTTGCACGGTGTT < 2:159648/150‑1 TCCCACAGGGGGGCTGATCACCGGGAGGGGTGAATCAGTCCTGGCGGCTGGTCACTTCCAGCAGGTGGTAGCCGAACTGGGTCTTCACCGGGCCTTGCACGGTGTTGACCGGTGCGCTGAAGACCACGGTGTCGAATTCCTTGACCATCT > 2:47085/1‑150 CCACAGGGGGGCTCATCCCCGGGAGGGGTGAATCAGTCCTGGCGGCTGGTCACCTCCAGCAGGTGGCAGCCGAACTGGGTCTTCCCCGGGCCTTGCACGGGGGTGCCCGGTACGCTTAAGAGCACGGTGTCGAATTCCTTGACGATCTGG > 1:166368/1‑150 CACAGGGGGGCTGATCACCGGGAGGGGTGAATCAGTCCTGGCGGCTGGTCACTTCCAGCAGGTGGTAGCCGAACTGGGTCTTCACCGGGCCTTGCACGGTGTTGACCGGTGCGCTGAAGACCACGGTGTCGAATTCCTTGACCATCTGGC > 2:611315/1‑150 CAGGGGGGCTGATCACCGGGAGGGGTGAATCAGTCCTGGCGGCTGGTCACTTCCAGCAGGTGGTAGCCGAACTGGGTCTTCACCGGGCCTTGCACGGTGTTGACCGGTGCGCTGAAGACCACGGTGTCGAATTCCTTGACCATCTGGCCT < 1:47085/150‑1 AGGGGGGCTGATCACCGGGAGGGGTGAATCAGTCCTGGCGGCTGGTCACTTCCAGCAGGTGGTAGCCGAACTGGGTCTTCACCGGGCCTTGCACGGTGTTGACCGGTGCGCTGAAGACCACGGTGTCGAATTCCTTGACCATCTGGCCTG < 1:611315/150‑1 GCCCGGTGAAGACCCAGTTCGGCTACCACCTGCTGGAAGTGACCAGCCGCCAGGACTGATTCACCCCTCCCGGTGATCAGCCCCCCTGTGGGAGCGGGTTTACCCGCGAAGAGGCCAGACCAGACAACCTCGTTGCCTGCTCCGACGCATTCGCGGGTAAACCCGCTCCCACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3464472‑3464300‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggtaaacccgctcccacaGGGGGGCTGATCACCGGGAGGGGTGAATCAGTCCTGGCGGCTGGTCACTTCCAGCAGGTGGTAGCCGAACTGGGTCTTCACCGGGCCTTGCACGGTGTTGACCGGTGCGCTGAAGACCACGGTGTCGAATTCCTTGACCATCTGGCCTG > NC_002947/3464387‑3464535 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |