New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3540125	30 (1.300)	4 (0.180)	4/240	NT	11.8%	coding (769/1539 nt)	PP_3127	exopolysaccharide transport protein
	?	NC_002947	= 3540140	31 (1.400)					coding (784/1539 nt)	PP_3127	exopolysaccharide transport protein

AAGGCTGCCCAGGAAGAGCTGCGCTACCTGGAACTGGAGCTGTCTGCGGCCAATGCCGGCCTTGCCACCAAGGTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3540050‑3540125 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggttgGCCGGGTGCCCTCGGCAACCTTGGTGGCAAGGCCGGCATTGGCCGCAGACAGCTCCAGTTCCAGGTAGCGCAGCTCTTCCTGGGC  <  NC_002947/3540140‑3540056                                                                                                                                                                   AAGGCTGCCCAGGAAGAGCTGCGCTACCTGGAACTGGAGCTGTCTGCGGCCAATGCCGGCCTTGCCACCAAGGTTGGCCGGGTGCCCTCGGCAACCTTG                                                                <  1:230116/99‑1 AAGGCTGCCCAGGAAGAGCTGCGCTACCTGGAACTGGAGCTGTCTGCGGCCAATGCCGGCCTTGCCACCAAGGTTGGCCGGGTGCCCTCGGCAACCTTG                                                                >  2:230116/1‑99                   CTGCGCTACCTGGAACTGGAGCTGTCTGCGGCCAATGCCGGCCTTGCCACCAAGGTTGGCCGGGTGCCCTCGGCAACCTTGGT                                                              >  1:317465/1‑83                   CTGCGCTACCTGGAACTGGAGCTGTCTGCGGCCAATGCCGGCCTTGCCACCAAGGTTGGCCGGGTGCCCTCGGCAACCTTGGT                                                              <  2:317465/83‑1                                                                          TTGGCCGGGTGCCCTCGGCAACCTTGGTGGCAAGGCCGGCATTGGCCGCAGACAGCTCCAGTTCCAGGAAGAGCTGCGCTACCTGGaa  >  1:230561/1‑86                                                                                                                                                                   AAGGCTGCCCAGGAAGAGCTGCGCTACCTGGAACTGGAGCTGTCTGCGGCCAATGCCGGCCTTGCCACCAAGGTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3540050‑3540125 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggttgGCCGGGTGCCCTCGGCAACCTTGGTGGCAAGGCCGGCATTGGCCGCAGACAGCTCCAGTTCCAGGTAGCGCAGCTCTTCCTGGGC  <  NC_002947/3540140‑3540056

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.