New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3540125	30 (1.300)	4 (0.180)	4/240	NT	11.8%	coding (769/1539 nt)	PP_3127	exopolysaccharide transport protein
	?	NC_002947	= 3540140	31 (1.400)					coding (784/1539 nt)	PP_3127	exopolysaccharide transport protein

ATGCTGTCGCGGGCGGAGCTGGAATTCCGTGAGGTCGACCGTGACTACAAGGCTGCCCAGGAAGAGCTGCGCTACCTGGAACTGGAGCTGTCTGCGGCCAATGCCGGCCTTGCCACCAAGGTTGCCGAGGGCACCCGGCCAACCCGTGCCGACCTGCCCGAAGACCTGCCAAGCCTGAAAGCCGAATACGCGCAACTGCTGACCCGCTACAAGGACGCCCACCCGGATGTCGTGGCGGTCAAGCGCAAGATCCAGGCGCTCGAAGCCAGTGGGGGGCGCACTGCGGCA  >  NC_002947/3540002‑3540289                                                                                                                                           |                                                                                                                                                      aTGCTGTCGCGGGCGGAGCTGGAATTCCGTGAGGTCGACCGTGACTACAAGGCTGCCCAGGAAGAGCTGCGCTACCTGGAACTGGAGCTGTCTGCGGCCAATGCCGGCCTTGCCACCAAGGTTGCCGAGGGCACCCGGCCAACCCGTGcc                                                                                                                                            >  2:252341/1‑150 (MQ=255)     tGTCGCGGGCGGAGCTGGAATTCCGTGAGGTCGACCGTGACTACAAGGCTGCCCAGGAAGAGCTGCGCTACCTGGAACTGGAGCTGTCTGCGGCCAATGCCGGCCTTGCCACCAAGGTTGCCGAGGGCACCCGGCCAACCCGTGCCGAcc                                                                                                                                        >  1:161723/1‑150 (MQ=255)       tCGCGGGCGGAGCTGGAATTCCGTGAGGTCGACCGTGACTACAAGGCTGCCCAGGAAGAGCTGCGCTACCTGGAACTGGAGCTGTCTGCGGCCAATGCCGGCCTTGCCACCAAGGTTGCCGAGGGCACCCGGCCAACCCGTGCCGACCTg                                                                                                                                      <  1:122659/150‑1 (MQ=255)          cgggcggAGCTGGAATTCCGTGAGGTCGACCGTGACTACAAGGCTGCCCAGGAAGAGCTGCGCTACCTGGAACTGGAGCTGTCTGCGGCCAATGCCGGCCTTGCCACCAAGGTTGCCGAGGGCACCCGGCCAACCCGTGCCGACCTGccc                                                                                                                                   >  2:175043/1‑150 (MQ=255)             gcggAGCTGGAATTCCGTGAGGTCGACCGTGACTACAAGGCTGCCCAGGAAGAGCTGCGCTACCTGGAACTGGAGCTGTCTGCGGCCAATGCCGGCCTTGCCACCAAGGTTGCCGAGGGCACCCGGCCAACCCGTGCCGACCTGCCCGaa                                                                                                                                <  2:310407/150‑1 (MQ=255)                       aaTTCCGTGAGGTCGACCGTGACTACAAGGCTGCCCAGGAAGAGCTGCGCTACCTGGAACTGGAGCTGTCTGCGGCCAATGCCGGCCTTGCCACCAAGGTTGCCGAGGGCACCCGGCCAACCCGTGCCGACCTGCCCGAAGACCTGCCaa                                                                                                                      <  1:446191/150‑1 (MQ=255)                            cGTGAGGTCGACCGTGACTACAAGGCTGCCCAGGAAGAGCTGCGCTACCTGGAACTGGAGCTGTCTGCGGCCAATGCCGGCCTTGCCACCAAGGTTGCCGAGGGCACCCGGCCAACCCGTGCCGACCTGCCCGAAGACCTGCCAAGCCTg                                                                                                                 <  1:175043/150‑1 (MQ=255)                                  gTCGACCGTGACTATAAGGCTGCCCAGGAAGAGCTGCGCTACCTGGAACTGGAGCTGTCTGCGGCCAATGCCGGCCTTGCCACCATGGTTGCCGAGGGCACCCGGCCAACCCGTGCCGACCTGCCCGAAGACCTGCCAAGCCTGAAAGcc                                                                                                           <  2:277409/150‑1 (MQ=255)                                     gACCGTGACTACAAGGCTGCCCAGGAAGAGCTGCGCTACCTGGAACTGGAGCTGTCTGCGGCCAATGCCGGCCTTGCCACCAAGGTTGCCGAGGGCACCCGGCCAACCCGTGCCGACCTGCCCGAAGACCTGCCAAGCCTGAAAGCCGaa                                                                                                        <  2:602470/150‑1 (MQ=255)                                      aCCGTGACTACAAGGCTGCCCAGGAAGAGCTGCGCTACCTGGAACTGGAGCTGTCTGCGGCCAATGCCGGCCTTGCCACCAAGGTTGCCGAGGGCAACCGGCCAACCCGTGCCGACCTGCCCGAAGACCTGCCAAGCCTGAAAGCCGAAt                                                                                                       >  1:589182/1‑150 (MQ=255)                                          tGACTACAAGGCTGCCCAGGAAGAGCTTCGCTACCTGGAACTGGAGCTGTCTGCGGCCAATGCCGGCCTTGCCACCAAGGTTGCCGAGGGCACCCGGCCAACCCGTGCCGACCTGCCCGAAGACCTGCCAAGCCTGAAAGCCGAATAcgc                                                                                                   >  1:391146/1‑150 (MQ=255)                                              tACAAGGCTGCCCAGGAAGAGCTGCGCTACCTGGAACTGGAGCTGTCTGCGGCCAATGCCGGCCTTGCCACCAAGGTTGCCGAGGGCACCCGGCCAACCCGTGCCGACCTGCCCGAAGACCTGCCAAGCCTGAAAGCCGAATACGCGCaa                                                                                               <  2:431358/150‑1 (MQ=255)                                              tACAAGGCTGCCCAGGAAGAGCTGCGCTACCTGGAACTGGAGCTGTCTGCGGCCAATGCCGGCCTTGCCACCAAGGTTGCCGAGGGCACCCGGCCAACCCGTGCCGACCTGCCCGAAGACCTGCCAAGCCTGAAAGCCGAATACGCGCaa                                                                                               >  2:232396/1‑150 (MQ=255)                                                cAAGGCTGCCCAGGAAGAGCTGCGCTACCTGGAACTGGAGCTGTCTGCGGCCAATGCCGGCCTTGCCACCAAGGTTGCCGAGGGCACCCGGCCAACCCGTGCCGACCTGCCCGAAGACCTGCCAAGCCTGAAAGCCGAATACGCGCAAct                                                                                             <  1:252341/150‑1 (MQ=255)                                                       ttccagGTAGCGCAGCTCTTCCTGGAACTGGAGCTGTCTGCGGCCAATGCCGGCCTTGCCACCAAGGTTGCCGAGGGCACCCGGCcaa                                                                                                                                                    >  1:230561‑M2/3‑85 (MQ=255)                                                          cAGGAAGAGCTGCGCTACCTGGAACTGGAGCTGTCTGCGGCCAATGCCGGCCTTGCCACCAAGGTTGCCGAGGGCACCCGGCCAACCCGTGCCGACCTGCCCGAAGACCTGCCAAGCCTGAAAGCCGAATACGCGCAACTGCTGACCCGc                                                                                   >  2:88228/1‑150 (MQ=255)                                                                gagCTGCGCTACCTGGAACTGGAGCTGTCTGCGGCCAATGCCGGCCTTGCCACCAAGGTTGCCGAGGGCACCCGGCCAACCCGTGCCGACCTGCCCGAAGACCTGCCAAGCCTGAAAGCCGAATACGCGCAACTGCTGACCCGCTACAAg                                                                             <  1:406638/150‑1 (MQ=255)                                                                             tGGAACTGGAGCTGTCTGCGGCCAATGCCGGCCTTGCCACCAAGGTTGCCGAGGGCACCCGGCCAACCCGTGCCGACCTGCCCGAAGACCt                                                                                                                           <  1:120354/91‑1 (MQ=255)                                                                             tGGAACTGGAGCTGTCTGCGGCCAATGCCGGCCTTGCCACCAAGGTTGCCGAGGGCACCCGGCCAACCCGTGCCGACCTGCCCGAAGACCt                                                                                                                           >  2:120354/1‑91 (MQ=255)                                                                                aaCTGGAGCTGTCTGCGGCCAATGCCGGCCTTGCCACCAAGGTTGCCGAGGGCACCCGGCCAACCCGTGCCGACCTGCCCGAAGACCTGCCAAGCCTGAAAGCCGAATACGCGCAACTGCTGACCCGCTACAAGGACGCCCACCCGGATg                                                             >  2:568676/1‑150 (MQ=255)                                                                                 aCTGGAGCTGTCTGCGGCCAATGCCGGCCTTGCCACCAAGGTTGCCGAGGGCACCCGGCCAACCCGTGCCGACCTGCCCGAAGACCTGCCAAGCCTGAAAGCCGAATACGCGCAActgct                                                                                          >  2:314743/1‑120 (MQ=255)                                                                                 aCTGGAGCTGTCTGCGGCCAATGCCGGCCTTGCCACCAAGGTTGCCGAGGGCACCCGGCCAACCCGTGCCGACCTGCCCGAAGACCTGCCAAGCCTGAAAGCCGAATACGCGCAActgct                                                                                          <  1:314743/120‑1 (MQ=255)                                                                                        cTGTCTGCGGCCAATGCCGGCCTTGCCACCAAGGTTGCCGAGGGCACCCGGCCAACCCGTGCCGACCTGCCCGAAGACCTGCCAAGCCTGAAAGCCGAATACGCGCAACTGCTGACCCGCTACAAGGACGCCCACCCGGATGTCGTGGCg                                                     <  2:161723/150‑1 (MQ=255)                                                                                        cTGTCTGCGGCCAATGCCGGCCTTGCCACCAAGGTTGCCGAGGGCACCCGGCCAACCCGTGCCGACCTGCCCGAAGACCTGCCAAGCCTGAAAGCCGAATACGCGCAACTGCTGACCCGCTACAAGGACGCCCACCCGGATGTCGTGGCg                                                     >  1:433718/1‑150 (MQ=255)                                                                                                   cAATGCCGGCCTTGCCACCAAGGTTGCCGAGGGCACCCGGCCAACCCGTGCCGACCTGCCCGAAGACCTGCCAAGCCTGAAAGCCGAATACGCGCAACTGCTGACCCGCTACAAGGACGCCCACCCGGATGTCGTGGCGGTCAAGCGCaa                                          >  2:121664/1‑150 (MQ=255)                                                                                                    aaTGCCGGCCTTGCCACCAAGGTTGCCGAGGGCACCCGGCCAACCCGTGCCGACCTGCCCGAAGACCTGCCAAGCCTGAAAGCCGAATACGCGCAACTGCTGACCCGCTACAAGGACGCCCACCCGGATGTCGTg                                                        >  2:293117/1‑135 (MQ=255)                                                                                                    aaTGCCGGCCTTGCCACCAAGGTTGCCGAGGGCACCCGGCCAACCCGTGCCGACCTGCCCGAAGACCTGCCAAGCCTGAAAGCCGAATACGCGCAACTGCTGACCCGCTACAAGGACGCCCACCCGGATGTCGTg                                                        <  1:293117/135‑1 (MQ=255)                                                                                                         cGGCCTTGCCACCAAGGTTGCCGAGGGCACCCGGCCAACCCGTGCCGACCTGCCCGAAGACCTGCCAAGCCTGAAAGCCGAATACGCGCAACTGCTGACCCGCTACAAGGACGCCCACCCGGATGTCGTGGCGGTCAAGCGCAAGATCCa                                    >  2:204428/1‑150 (MQ=255)                                                                                                                   accaAGGTTGCCGAGGGCACCCGGCcaaccttggtggcaaggccggcattggccgcagacagctccagttccaggtagcgcag                                                                                             >  1:317465‑M2/1‑25 (MQ=255)                                                                                                                   accaAGGTTGCCGAGGGCACCCGGCcaaccttggtggcaaggccggcattggccgcagacagctccagttccaggtagcgcag                                                                                             <  2:317465‑M2/83‑59 (MQ=255)                                                                                                                   accaAGGTTGCCGAGGGCACCCGGCCAACCCGTGCCGACCTGCCCGAAGACCTGCCAAGCCTGAAAGCCGAATACGCGCAACTGCTGACCCGCTACAAGGACGCCCACCCGGATGTCGTGGCGGTCAAGCGCAAGATCCAGGCGCTCGaa                          >  1:455867/1‑150 (MQ=255)                                                                                                                     caAGGTTGCCGAGGGCACCCGGCcaaccttggtggcaaggccggcattggccgcagacagctccagttccaggtagcgcagctcttcctgggcagcctt                                                                           >  2:230116‑M2/1‑23 (MQ=255)                                                                                                                     caAGGTTGCCGAGGGCACCCGGCcaaccttggtggcaaggccggcattggccgcagacagctccagttccaggtagcgcagctcttcctgggcagcctt                                                                           <  1:230116‑M2/99‑77 (MQ=255)                                                                                                                          ttGCCGAGGGCACCCGGCCAACCCGTGCCGACCTGCCCGAAGACCTGCCAAGCCTGAAAGCCGAATACGCGCAACTGCTGACCCGCTACAAGGACGCCCACCCGGATGTCGTGGCGGTCAAGCGCAAGATCCAGGCGCTCGAAGCCAGTg                   >  2:253791/1‑150 (MQ=255)                                                                                                                               gAGGGCACCCGGCCAACCCGTGCCGACCTGCCCGAAGACCTGCCAAGCCTGAAAGCCGAATACGCGCAACTGCTGACCCGCTACAAGGACGCCCACCCGGATGTCGTGGCGGTCAAGCGCAAGATCCAGGCGCTCGAAGCCAGTgggggg              <  1:253791/150‑1 (MQ=255)                                                                                                                                     aCCCGGCCAACCCGTGCCGACCTGCCCGAAGACCTGCCAAGCCTGAAAGCCGAATACGCGCAACTGCTGACCCGCTACAAGGACGCCCACCCGGATGTCGTGGCGGTCAAGCGCAAGATCCAGGCGCTCGAAGCCAGTGGGGGGCGCACt        >  2:45429/1‑150 (MQ=255)                                                                                                                                       ccGGCCAACCCATGCCGACCTTCCCGAAGACCTGCCAAGCCTGAAAGCCGAATACGCGCAACTGCTGACCCGCTACAAGGACGCCCACCCGGATGTCGTGGCGGTCAAGCGCAAGATCCAGGCGCTCGAAGCCAGTGGGGGGCGCACTGc      >  1:396460/1‑150 (MQ=255)                                                                                                                                           ccAACCCGTGCCGACCTGCCCGAAGACCTGCCAAGCCTGAAAGCCGAATACGCGCAACTGCTGACCCGCTACAAGGACGCCCACCCGGATGTCGTGGCGGTCAAGCGCAAGATCCAGGCGCTCGAAGCCAGTGGGGGGCGCACTGCGGCa  <  1:121664/150‑1 (MQ=255)                                                                                                                                           |                                                                                                                                                      ATGCTGTCGCGGGCGGAGCTGGAATTCCGTGAGGTCGACCGTGACTACAAGGCTGCCCAGGAAGAGCTGCGCTACCTGGAACTGGAGCTGTCTGCGGCCAATGCCGGCCTTGCCACCAAGGTTGCCGAGGGCACCCGGCCAACCCGTGCCGACCTGCCCGAAGACCTGCCAAGCCTGAAAGCCGAATACGCGCAACTGCTGACCCGCTACAAGGACGCCCACCCGGATGTCGTGGCGGTCAAGCGCAAGATCCAGGCGCTCGAAGCCAGTGGGGGGCGCACTGCGGCA  >  NC_002947/3540002‑3540289

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.