New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3541922	37 (1.600)	5 (0.220)	5/242	NT	12.5%	coding (844/966 nt)	galE	UDP‑glucose 4‑epimerase
	?	NC_002947	= 3541938	34 (1.520)					coding (828/966 nt)	galE	UDP‑glucose 4‑epimerase

CAGCCCAGCACCTGCATGGCCTTGCTCGCATCCGCCACCAGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3541879‑3541922 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgCGCCGGCGAC‑CCGCCACGGCTGGTGGCGGATGCGAGCAAGGCCATGCAGGTGCTGGGCTGGCGCCCTGCATTCGCCTCACTGGAGCAGATTGTGCGGCATGCGTGGCAGTGGGAGTTGCAGTATCCCTGGAGG  <  NC_002947/3541938‑3541806                                                                                                                                                                                    CAGCCCAGCACCTGCATGGCCTTGCTCGCATCCGCCACCAGCCGCGCCGGCGAC‑CCGCCACGGCTGGTGGCGGATGCGAGCAAG                                                                                               <  1:402212/84‑1 CAGCCCAGCACCTGCATGGCCTTGCTCGCATCCGCCACCAGCCGCGCCGGCGAC‑CCGCCACGGCTGGTGGCGGATGCGAGCAAG                                                                                               >  2:402212/1‑84               CATGGCCTTGCTCGCATCCGCCACCAGCCGCGCCGGCGAC‑CCGCCACGGCTGGTGGCGGATGCGAGCAAGGCCATGCAGGTGCTGGGCTGGCGCCCTGCATTCGCCTCACTGGAG                                                  <  1:425944/115‑1               CATGGCCTTGCTCGCATCCGCCACCAGCCGCGCCGGCGAC‑CCGCCACGGCTGGTGGCGGATGCGAGCAAGGCCATGCAGGTGCTGGGCTGGCGCCCTGCATTCGCCTCACTGGAG                                                  >  2:425944/1‑115                            GCATCCGCCACCAGCCGTGGCGG‑GTCGCCGGCGCGGCTGGTGGCGGATGCGAGCAAGGCCATGCAGGTGCTGGGCTGGCGCCCTGCATTCGCCTCACTGGAGCAGATTGTGCGGCATGCGTGGCAGTGGGAGTTGCAGTATCCCTGGAGG  >  1:65430/1‑150                                                                                                                                                                                    CAGCCCAGCACCTGCATGGCCTTGCTCGCATCCGCCACCAGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3541879‑3541922 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgCGCCGGCGAC‑CCGCCACGGCTGGTGGCGGATGCGAGCAAGGCCATGCAGGTGCTGGGCTGGCGCCCTGCATTCGCCTCACTGGAGCAGATTGTGCGGCATGCGTGGCAGTGGGAGTTGCAGTATCCCTGGAGG  <  NC_002947/3541938‑3541806

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.