New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3541922	37 (1.600)	5 (0.220)	5/242	NT	12.5%	coding (844/966 nt)	galE	UDP‑glucose 4‑epimerase
	?	NC_002947	= 3541938	34 (1.520)					coding (828/966 nt)	galE	UDP‑glucose 4‑epimerase

TGAAAGCTATGAGGCCAACTCAGCGCCTCCAGGGATACTGCAACTCCCACTGCCACGCATGCCGCACAATCTGCTCCAGTGAGGCGAATGCAGGGCGCCAGCCCAGCACCTGCATGGCCTTGCTCGCATCCGCCACCAGCCGTGGCGG‑GTCGCCGGCGCGGCGCTGTGCGTCAAGGGCAGTGATCTGTCGCCCGGTCACGGCCCGGGCCGTATCGATCACCTGCTGCACCGAAAAGCCCAGGCCATTGCCCAGGTTGAACGCGGCACGCTCGCCACCGTCCAG  >  NC_002947/3541781‑3542063                                                                                                                                              |                                                                                                                                               tGAAAGCTATGAGGCCAACTCAGCGCCTCCAGGGATACTGCAACTCCCACTGCCACGCATGCCGCACAATCTGCTCCAGTGAGGCGAATGCAGGGCGCCAGCCCAGCACCTGCATGGCCTTGCTCGCATCCGCCACCAGCCGTGGCGG‑Gt                                                                                                                                       >  2:598971/1‑150 (MQ=255)                 aaCTCAGCACCCCCAGCGGTACTGCAACTCCCACTGCCACGCATGCCGCACAATCTGCTCCAGTGAGGCGAATGCAGGGCGCCAGCCCAGCACCTGCATGGCCATGCTCGCATCCGCCACCAGCCGTGGCGG‑GTCGCCGGCGCGGCGCtg                                                                                                                       >  2:346106/1‑150 (MQ=255)                      aGCGCCTCCAGGGATACTGCAACTCCCACTGCCACGCATGCCGCACAATCTGCTCCAGTGAGGCGAATGCAGGGCGCCAGCCCAGCACCTGCATGGCCTTGCTCGCATCCGCCACCAGCCGTGGCGG‑GTCGCCGGCGCGGCGCTGTGCGt                                                                                                                  >  1:574663/1‑150 (MQ=255)                          ccTCCAGGGATACTGCAACTCCCACTGCCACGCATGCCGCACAATCTGCTCCAGTGAGGCGAATGCAGGGCGCCAGCCCAGCACCTGCATGGCCTTGCTCGCATCCGCCACCAGCCGCGCCGGCGAC‑CCGCCAcggctggtggcggatgc                                                                                                              >  1:65430‑M2/1‑133 (MQ=255)                            tCCAGGGATACTGCAACTCCCACTGCCACGCATGCCGCACAATCTGCTCCAGTGAGGCGAATGCAGGGCGCCAGCCCAGCACCTGCATGGCCTTGCTCGCATCCGCCACCAGCCGTGGCGG‑GTCGCCGGCGCGGCGCTGTGCGTCAAggg                                                                                                            <  2:574663/150‑1 (MQ=255)                            tCCAGGGATACTGCAACTCCCACTGCCACGCATGCCGCACAATCTGCTCCAGTGAGGCGAATGCAGGGCGCCAGCCCAGCACCTGCATGGCCTTGCTCGCATCCGCCACCAGCCGTGGCGG‑GTCGCCGGCGCGGCGCTGTGCGTCAAggg                                                                                                            >  2:555787/1‑150 (MQ=255)                              cAGGGATACTGCAACTCCCACTGCCACGCATGCCGCACAATCTGCTCCAGTGAGGCGAATGCAGGGCGCCAGCCCAGCACCTGCATGGCCTTGCTCGCATCCGCCACCAGCCGTGGCGG‑GTCGCCGGCGCGGCGCTGTGCGTCAAGGGCa                                                                                                          >  1:371324/1‑150 (MQ=255)                                gggATACTGCAACTCCCACTGCCACGCATGCCGCACAATCTGCTCCAGTGAGGCGAATGCAGGGCGCCAGCCCAGCACCTGCATGGCCTTGCTCGCATCCGCCACCAGCCGTGGCgg                                                                                                                                          >  1:233161/1‑117 (MQ=255)                                gggATACTGCAACTCCCACTGCCACGCATGCCGCACAATCTGCTCCAGTGAGGCGAATGCAGGGCGCCAGCCCAGCACCTGCATGGCCTTGCTCGCATCCGCCACCAGCCGTGGCgg                                                                                                                                          <  2:233161/117‑1 (MQ=255)                                   aTACTGCAACTCCCACTGCCACGCATGCCGCACAATCTGCTCCAGTGAGGCGAATGCAGGGCGCCAGCCCAGCACCTGCATGGCCTTGCTCGCATCCGCCACCAGCCGTGGCGG‑GTCGCCGGCGCGGCGCTGTGCGTCAAGGGCAGTGAt                                                                                                     <  1:555787/150‑1 (MQ=255)                                    tACTGCAACTCCCACTGCCACGCATGCCGCACAATCTGCTCCAGTGAGGCGAATGCAGGGCGCCAGCCCAGCACCTGCATGGCCTTGCTCGCATCCGCCACCAGCCGTGGCGG‑GTCGCCGGCGCGGCGCTGTGCGTCAAGGGCAGTGATc                                                                                                    <  2:559988/150‑1 (MQ=255)                                       tGCAACTCCCACTGCCACGCATGCCGCACAATCTGCTCCAGTGAGGCGAATGCAGGGCGCCAGCCCAGCACCTGCATGGCCTTGCTCGCATCCGCCACCAGCCGTGGCGG‑GTCGCCGGCGCGGCGCTGTGCGTCAAGGGCAGTGATCTGt                                                                                                 >  1:59015/1‑150 (MQ=255)                                            cTCCCACTGCCACGCATGCCGCACAATCTGCTCCAGTGAGGCGAATGCAGGGCGCCAGCCCAGCACCTGCATGGCCTTGCTCGCATCCGCCACCAGCCGTGGCGG‑GTCGCCGGCGCGGCGCTGTGCGTCAAGGGCAGTGATCTGTCGccc                                                                                            <  2:59015/150‑1 (MQ=255)                                             tCCCACTGCCACGCATGCCGCACAATCTGCTCCAGTGCGGCGAATGCAGGGCGCCAGCCCAGCACCTGCATGGCCTTGCTCGCATCCGCCACCAGCCGTGGCGG‑GTCGCCGGCGCGGCGCTGTGCGTCAAGGGCAGTGATCTGTc                                                                                                <  2:70131/145‑1 (MQ=255)                                             tCCCACTGCCACGCATGCCGCACAATCTGCTCCAGTGAGGCGAATGCAGGGCGCCAGCCCAGCACCTGCATGGCCTTGCTCGCATCCGCCACCAGCCGTGGCGG‑GTCGCCGGCGCGGCGCTGTGCGTCAAGGGCAGTGATCTGTc                                                                                                >  1:70131/1‑145 (MQ=255)                                             tCCCACTGCCACGCATGCCGCACAATCTGCTCCAGTGAGGCGAATGCAGGGCGCCAGCCCAGCACCTGCATGGCCTTGCTCGCATCCGCCACCAGCCGTGGCGG‑GTCGCCGGCGCGGCGCTGTGCGTCAAGGGCAGTGATCTGTCGCCCg                                                                                           >  2:204396/1‑150 (MQ=255)                                                       aCGCATGCCGCACAATCTGCTCCAGTGAGGCGAATGCAGGGCGCCAGCCCAGCACCTGCATGGCCTTGCTCGCATCCGCCACCAGCCGTGGCgg                                                                                                                                          >  1:158867/1‑94 (MQ=255)                                                       aCGCATGCCGCACAATCTGCTCCAGTGAGGCGAATGCAGGGCGCCAGCCCAGCACCTGCATGGCCTTGCTCGCATCCGCCACCAGCCGTGGCgg                                                                                                                                          <  2:158867/94‑1 (MQ=255)                                                           aTGCCGCACAATCTGCTCCAGTGAGGCGAATGCAGGGCGCCAGCCCAGCACCTGCATGGCCTTGCTCGCATCCGCCACCAGCCGTGGCGG‑GTCGCCGGCGCGGCGCTGTGCGTCAAGGGCAGTGATCTGTCGCCCGGTCACGGCCCGGGc                                                                             <  2:371324/150‑1 (MQ=255)                                                              ccGCACAATCTGCTCCAGTGAGGCGAATGCAGGGCGCCAGCCCAGCACCTGCATGGCCTTGCTCGCATCCGCCACCAGCCGTGGCGG‑GTCGCCGGCGCGGCGCTGTGCGTCAAGGGCAGTGATCTGTCGCCCGGTCACGGCCCGGGCCGt                                                                          >  1:222626/1‑150 (MQ=255)                                                                gCACAATCTGCTCCAGTGAGGCGAATGCAGGGCGCCAGCCCAGCACCTGCATGGCCTTGCTCGCATCCGCCACCAGCCGTGGCGG‑GTCGCCGGCGCGGCGCTGTGCGTCAAGGGCAGTGATCTGTCGCCCGGTCACGGCCCGGGCCGTAt                                                                        <  1:204396/150‑1 (MQ=255)                                                                          cTCCAGTGAGGCGAATGCAGGGCGCCAGCCCAGCACCTGCATGGCCTTGCTCGCATCCGCCACCAGCCGTGGCGG‑GTCGCCGGCGcggctggtggcggatgcgagcaaggccatg                                                                                                 <  1:425944‑M2/115‑31 (MQ=255)                                                                          cTCCAGTGAGGCGAATGCAGGGCGCCAGCCCAGCACCTGCATGGCCTTGCTCGCATCCGCCACCAGCCGTGGCGG‑GTCGCCGGCGcggctggtggcggatgcgagcaaggccatg                                                                                                 >  2:425944‑M2/1‑85 (MQ=255)                                                                             cAGTGAGGCGAATGCAGGGCGCCAGCCCAGCACCTGCATGGCCTTGCTCGCATCCGCCACCAGCCGTGGCGG‑GTCGCCGGCGCGGCGCTGTGCGTCAAGGGCAGTGATCTGTCGCCCGGTCACGGCCCGGGCCGTATCGATCACctgctg                                                           >  1:50620/1‑150 (MQ=255)                                                                                  aGGCGAATGCAGGGCGCCAGCCCAGCACCTGCATGGCCTTGCTCGCATCCGCCACCAGCCGTGGCGG‑GTCGCCGGCGCGGCGCTGTGCGTCAAGGGCAGTGATCTGTCGCCCGGTCACGGCCCGGGCCGTATCGATCACCTGCTGCAACg                                                      >  1:62836/1‑150 (MQ=255)                                                                                      gAATGCAGGGCGCCAGCCCAGCACCTGCATGGCCTTGCTCGCATCCGCCACCAGCCGTGGCGG‑GTCGCCGGCGCGGCGCTGTGCGTCAAGGGCAGTGATCTGTCGCCCGGTCACGGCCCGGGc                                                                             <  2:508697/123‑1 (MQ=255)                                                                                      gAATGCAGGGCGCCAGCCCAGCACCTGCATGGCCTTGCTCGCATCCGCCACCAGCCGTGGCGG‑GTCGCCGGCGCGGCGCTGTGCGTCAAGGGCAGTGATCTGTCGCCCGGTCACGGCCCGGGc                                                                             >  1:508697/1‑123 (MQ=255)                                                                                           cacggCGCCAGCCCAGCACCTGCATGGCCTTGCTCGCATCCGCCACCAGCCGTGGCGG‑GTCGCCGGCGCGGCGCTGTGCGTCAAGGGCAGTGATCCGTCCCCCCCTCACGGCCCGGGCCGTATCGATCACCTGCTGCACCGAAAAGCCCa                                             <  2:242204/147‑1 (MQ=255)                                                                                           cAGGGCGCCAGCCCAGCACCTGCATGGCCTTGCTCGCATCCGCCACCAGCCGTGGCGG‑GTCGCCGGCGCGGCGCTGTGCGTCAAGGGCAGTGATCTGTCGCCCGGTCACGGCCCGGGCCGTATCGATCACCTGCTGCACCGAAAAGCCCa                                             <  2:222626/150‑1 (MQ=255)                                                                                            aGGGCGCCAGCCCAGCACCTGCATGGCCTTGCTCGCATCCGCCACCAGCCGTGGCGG‑GTCGCCGACGCGGCGCTGTGCGTCAAGGGCAGTGATCTGTCGCCCGGTCACGGCCCGGGCCGTATCGATCACCTGCTGCACCGAAAAGCCCAg                                            >  1:236723/1‑150 (MQ=255)                                                                                                   cagcccagcACCTGCATGGCCTTGCTCGCATCCGCCACCAGCCGcgccggcgacccgccacggctggtggcggatgcgagcaag                                                                                                        >  2:402212‑M1/1‑44 (MQ=255)                                                                                                   cagcccagcACCTGCATGGCCTTGCTCGCATCCGCCACCAGCCGcgccggcgacccgccacggctggtggcggatgcgagcaag                                                                                                        <  1:402212‑M1/84‑41 (MQ=255)                                                                                                   cagcccagcACCTGCATGGCCTTGCTCGCATCCGCCACCAGCCGTGGCGG‑GTCGCCGGCGCGGCGCTGTGCGTCAAGGGCAGTGATCTGTCGCCCGGTCACGGCCCGGGCCGTATCGATCACCTGCTGCACCGAAAAGCCCAGGCCATTg                                     >  2:492071/1‑150 (MQ=255)                                                                                                             ccTGCATGGCCTTGCTCGCATCCGCCACCAGCCGTGGCGG‑GTCGCCGGCGCGGCGCTGTGCGTCAAGGGCAGTGATCTGTCGCCCGGTCACGGCCCGGGCCGTATCGATCACCTGCTGCACCGAAAAGCCCAGGCCATTGCCCAGGTTGa                           >  1:847/1‑150 (MQ=255)                                                                                                                gCATGGCCTTGCTCGCATCCGCCACCAGCCGTGGCGG‑GTCGCCGGCGCGGCGCTGTGCGTCAAGGGCAGTGATCTGTCGCCCGGTCACGGCCCGGGCCGTATCGATCACCTGCTGCACCGAAAAGCCCAGGCCATTGCCCAGGTTGAAcg                        >  1:34972/1‑150 (MQ=255)                                                                                                                 cATGGCCTTGCTCGCATCCGCCACCAGCCGcgccggcgacccgccacggctggtggcggatgcgagcaaggccatgcaggtgctgggctggcgccctgcattcgcctcactggag                                                           >  2:425944‑M1/1‑30 (MQ=255)                                                                                                                 cATGGCCTTGCTCGCATCCGCCACCAGCCGcgccggcgacccgccacggctggtggcggatgcgagcaaggccatgcaggtgctgggctggcgccctgcattcgcctcactggag                                                           <  1:425944‑M1/115‑86 (MQ=255)                                                                                                                 cATGGCCTTGCTCGCATCCGCCACCAGCCGTGGCGG‑GTCGCCGGCGCGGCGCTGTGCGTCAAGGGCAGTGATCTGTCGCCCGGTCACGGCCCGGGCCGTATCGATCACCTGCTGCACCGAAAAGCCCAGGCCATTGCCCAGGTTGAAcgc                       <  2:572418/150‑1 (MQ=255)                                                                                                                       cTTGCTCGCATCCGCCACCAGCCGTGGCGG‑GTCGCCGGCGcggctggtggcggatgcgagcaaggccatgcaggtgctgggctg                                                                                   <  1:402212‑M2/84‑45 (MQ=255)                                                                                                                       cTTGCTCGCATCCGCCACCAGCCGTGGCGG‑GTCGCCGGCGcggctggtggcggatgcgagcaaggccatgcaggtgctgggctg                                                                                   >  2:402212‑M2/1‑40 (MQ=255)                                                                                                                              gCATCCGCCACCAGCCGtggcgggtcgccggcgcggctggtggcggatgcgagcaaggccatgcaggtgctgggctggcgccctgcattcgcctcactggagcagattgtgcggcatgcgtggcagtgggagttgcagtatccctggagg           >  1:65430‑M1/1‑17 (MQ=255)                                                                                                                              gCATCCGCCACCAGCCGTGGCGG‑GTCGCCGGCGCGGCGCTGTGCGTCAAGGGCAGTGATCTGTCGCCCGGTCACGGCCCGGGCCGTATCGATCACCTGCTGCACCGAAAAGCCCAGGCCATTGCCCAGGTTGAACGCGGc                    <  2:462177/140‑1 (MQ=255)                                                                                                                              gCATCCGCCACCAGCCGTGGCGG‑GTCGCCGGCGCGGCGCTGTGCGTCAAGGGCAGTGATCTGTCGCCCGGTCACGGCCCGGGCCGTATCGATCACCTGCTGCACCGAAAAGCCCAGGCCATTGCCCAGGTTGAACGCGGc                    >  1:462177/1‑140 (MQ=255)                                                                                                                                 tCCGCCACCAGCCGTGGCGG‑GTCGCCGGCGCGGCGCTGTGCGGCAAGGGCAGTGATCTGTCGCCCGGTCACGGCCCGGGCCGTATCGATCACCTGCTGCACCGAAAAGCCCAGGCCATTGCCCAGGTTGAACGCGGCACGCTCGCCACCg       >  1:144268/1‑150 (MQ=255)                                                                                                                                      caccaGCCGTGGCGG‑GTCGCCGGCGCGGCGCTGTGCGTCAAGGGCAGTGATCTGTCGCCCGGTCACGGCCCGGGCCGTATCGATCACCTGCTGCACCGAAAAGCCCAGGCCATTGCCCAGGTTGAACGCGGCACGCTCGCCACCGTCCAg  >  1:460849/1‑150 (MQ=255)                                                                                                                                       accaGCCGTGGCGG‑GTCGCCGGCGCGGCGCTGTGCGTCAAGGGCAGTGATCTGTCGCCCGGTCACGGCCCGGGCCGTATCGATCACCTGCTGCACCGAAAAGCCCAGGCCATTGCCCAGGtt                             <  2:153676/122‑1 (MQ=255)                                                                                                                                       accaGCCGTGGCGG‑GTCGCCGGCGCGGCGCTGTGCGTCAAGGGCAGTGATCTGTCGCCCGGTCACGGCCCGGGCCGTATCGATCACCTGCTGCACCGAAAAGCCCAGGCCATTGCCCAGGtt                             >  1:153676/1‑122 (MQ=255)                                                                                                                                              |                                                                                                                                               TGAAAGCTATGAGGCCAACTCAGCGCCTCCAGGGATACTGCAACTCCCACTGCCACGCATGCCGCACAATCTGCTCCAGTGAGGCGAATGCAGGGCGCCAGCCCAGCACCTGCATGGCCTTGCTCGCATCCGCCACCAGCCGTGGCGG‑GTCGCCGGCGCGGCGCTGTGCGTCAAGGGCAGTGATCTGTCGCCCGGTCACGGCCCGGGCCGTATCGATCACCTGCTGCACCGAAAAGCCCAGGCCATTGCCCAGGTTGAACGCGGCACGCTCGCCACCGTCCAG  >  NC_002947/3541781‑3542063

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.