New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 3963855 = | 19 (0.820) | 3 (0.140) | 3/240 | NT | 12.7% | coding (193/933 nt) | PP_3493 | LysR family transcriptional regulator |
? | NC_002947 | 3963900 = | 23 (1.040) | coding (148/933 nt) | PP_3493 | LysR family transcriptional regulator |
TGGAATGTGGCAGCTTCGCTGCAGCTGCCAATGCTCTGGATATTTCTGCAGCGCAGGTTTCGCGCATCGTCGCCGAGCTGGAGAACCAGCTGCAGACCCGCCTGCTGCACCGCACCACCCGGCGCCTGCGCATGAGCGAGGCGGGTGAGCGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3964007‑3963855 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggtGCAGCAGGCGGGTCTGCAGCTGGTTCTCCAGCTCGGCGACGATGCGCGAAACCTGCGCTGCAGAAATATCCAGAGCATTGGCAGCTGCAGCGAA > NC_002947/3963900‑3963993 TGGAATGTGGCAGCTTCGCTGCAGCTGCCAATGCTCTGGATATTTCTGCAGCGCAGGTTTCGCGCATCGTCGCCGAGCTGGAGAACCAGCTGCAGACCCGCCTGCTGCACCGCACCACCCGGCGCCTGCGCATGAGCGAGGCGGGTGAGC > 1:343270/1‑150 CCGCCTGCTGCACCGCACCACCCGGCGCCTGCGCATTAGCGAGGCGGGTGAGCGGTGCAGCAGGCGGGTCTGCAGCTGGTTCTCCAGCTCGGCGACGATGCGCGAAACCTGCGCTGCAGAAATGTCCAGAGCATTGGCAGCTGCAGCGAA > 1:49961/1‑150 CGCACCACCCGGCGCCTGCGCATGAGCGAGGCGGGTGAGCGGTGCAGCAGGCGGGTCTGCAGCTGGTTCTCCAG > 1:438652/1‑74 CGCACCACCCGGCGCCTGCGCATGAGCGAGGCGGGTGAGCGGTGCAGCAGGCGGGTCTGCAGCTGGTTCTCCAG < 2:438652/74‑1 TGGAATGTGGCAGCTTCGCTGCAGCTGCCAATGCTCTGGATATTTCTGCAGCGCAGGTTTCGCGCATCGTCGCCGAGCTGGAGAACCAGCTGCAGACCCGCCTGCTGCACCGCACCACCCGGCGCCTGCGCATGAGCGAGGCGGGTGAGCGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3964007‑3963855 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggtGCAGCAGGCGGGTCTGCAGCTGGTTCTCCAGCTCGGCGACGATGCGCGAAACCTGCGCTGCAGAAATATCCAGAGCATTGGCAGCTGCAGCGAA > NC_002947/3963900‑3963993 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |