New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3963855 =	19 (0.820)	3 (0.140)	3/240	NT	12.7%	coding (193/933 nt)	PP_3493	LysR family transcriptional regulator
	?	NC_002947	3963900 =	23 (1.040)					coding (148/933 nt)	PP_3493	LysR family transcriptional regulator

TGGAATGTGGCAGCTTCGCTGCAGCTGCCAATGCTCTGGATATTTCTGCAGCGCAGGTTTCGCGCATCGTCGCCGAGCTGGAGAACCAGCTGCAGACCCGCCTGCTGCACCGCACCACCCGGCGCCTGCGCATGAGCGAGGCGGGTGAGCGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3964007‑3963855 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggtGCAGCAGGCGGGTCTGCAGCTGGTTCTCCAGCTCGGCGACGATGCGCGAAACCTGCGCTGCAGAAATATCCAGAGCATTGGCAGCTGCAGCGAA  >  NC_002947/3963900‑3963993                                                                                                                                                                                                                                                         TGGAATGTGGCAGCTTCGCTGCAGCTGCCAATGCTCTGGATATTTCTGCAGCGCAGGTTTCGCGCATCGTCGCCGAGCTGGAGAACCAGCTGCAGACCCGCCTGCTGCACCGCACCACCCGGCGCCTGCGCATGAGCGAGGCGGGTGAGC                                                                                                   >  1:343270/1‑150                                                                                                  CCGCCTGCTGCACCGCACCACCCGGCGCCTGCGCATTAGCGAGGCGGGTGAGCGGTGCAGCAGGCGGGTCTGCAGCTGGTTCTCCAGCTCGGCGACGATGCGCGAAACCTGCGCTGCAGAAATGTCCAGAGCATTGGCAGCTGCAGCGAA  >  1:49961/1‑150                                                                                                               CGCACCACCCGGCGCCTGCGCATGAGCGAGGCGGGTGAGCGGTGCAGCAGGCGGGTCTGCAGCTGGTTCTCCAG                                                                 >  1:438652/1‑74                                                                                                               CGCACCACCCGGCGCCTGCGCATGAGCGAGGCGGGTGAGCGGTGCAGCAGGCGGGTCTGCAGCTGGTTCTCCAG                                                                 <  2:438652/74‑1                                                                                                                                                                                                                                                         TGGAATGTGGCAGCTTCGCTGCAGCTGCCAATGCTCTGGATATTTCTGCAGCGCAGGTTTCGCGCATCGTCGCCGAGCTGGAGAACCAGCTGCAGACCCGCCTGCTGCACCGCACCACCCGGCGCCTGCGCATGAGCGAGGCGGGTGAGCGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3964007‑3963855 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggtGCAGCAGGCGGGTCTGCAGCTGGTTCTCCAGCTCGGCGACGATGCGCGAAACCTGCGCTGCAGAAATATCCAGAGCATTGGCAGCTGCAGCGAA  >  NC_002947/3963900‑3963993

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.