New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3963855 =	19 (0.820)	3 (0.140)	3/240	NT	12.7%	coding (193/933 nt)	PP_3493	LysR family transcriptional regulator
	?	NC_002947	3963900 =	23 (1.040)					coding (148/933 nt)	PP_3493	LysR family transcriptional regulator

GCGGCATCAGCAACAGCCCCATGCCGTGCGGGCAGTGCAAACGCAGATGGCCGCGAGGCGTAAGGTGCGCCCCTCGCGCCTCGCCCACGGCTTCTTCGGTCAGCAGCATGATCTGCCGCGCACGCTCCAGAAACCGCTCACCCGCCTCGCTCATGCGCAGGCGCCGGGTGGTGCGGTGCAGCAGGCGGGTCTGCAGCTGGTTCTCCAGCTCGGCGACGATGCGCGAAACCTGCGCTGCAGAAATATCCAGAGCATTGGCAGCTGCAGCGAAGCTG  >  NC_002947/3963723‑3963997                                                                                                                                     |                                                                                                                                               gCGGCATCAGCAACAGCCCCATGCCGTGCGGGCAGTGCAAACGCAGATGGCCGCGAGGCGCAAGGTGCGCCCCTCGCGCCTCGCCCACGGCTTCTTCGGTCAGCAGCATGATCTGCCGCGCACGCTCCAGAAACCGCTCACCCGCCTCGc                                                                                                                               >  2:455840/1‑150 (MQ=255)          gCAACAGCCCCATGCCGTGCGGGCAGTGCAAACGCAGATGGCCGCGAGGCGTAAGGTGCGCCCCTCGCGCCTCGCCCACGGCTTCTTCGGTCAGCAGCATGATCTGCCGCGCACGCTCCAGAAACCGCTCACCCGCCTCGCTCATGCGCa                                                                                                                      >  2:467779/1‑150 (MQ=255)                    cATGCAGTGCGGGCAGTGCAAACGCAGATGGCCGCGAGGCGTAAGGTGCGCCCCTCGCGCCTCGCCCACGGCTTATACGGTCAGCAGCATGATCTGCCGCGCACGCTCCAGAAACCGCTCACCCGCCTCGCTCATGCGCAGGCGCCGggt                                                                                                            >  2:511829/1‑150 (MQ=255)                                       ttcgctgcagctgccaatgctctggacatttctgcagcgcaggtttcgcgcatcgtcgccgagctggagaaccagctgcagacccgcctgctgcACCGCTCACCCGCCTCGCTAATGCGCAGGCGCCGGGTGGTGCGGTGCAGCAGGCgg                                                                                         >  1:49961‑M1/95‑150 (MQ=255)                                        aaCGCAGATGGCCGCGAGGCGTAAGGTGCGCCCCTCGCGCCTCGCCCACGGCTTCTTCGGTCAGCAGCATGATCTGCCGCGCACGCTCCAGAAACCGCTCACCCGACTCGCTCATGCGCAGGCGCCGGGTGGTGCGGTGCAGCAGGCggg                                                                                        >  2:445336/1‑150 (MQ=255)                                          cGCAGATGGCCGCGAGGCGTAAGGTGCGCCCCTCGCGCCTCGCCCACGGCTTCTTCGGTCAGCAGCATGATCTGCCGCGCACGCTCCAGAAACCGCTCACCCGCCTCGCTCATGCGCAGGCGCCGGGTGGTGCGGTGCAGCAGGCGGGTc                                                                                      <  1:595630/150‑1 (MQ=255)                                             aGATGGCCGCGAGGCGTAAGGTGCGCCCCTCGCGCCTCGCCCACGGCTTCTTCGGTCAGCAGCATGATCTGCCGCGCACGCTCCAGAAACCGCTCACCCGCCTCGCTCATGCGCAGGCGCCGGGTGGTGCGGTGCAGCAGGCGGGTCTGc                                                                                   >  1:22975/1‑150 (MQ=255)                                              gATGGCCGCGAGGCGTAAGGTGCGCCCCTCGCGCCTCGGCCACGGCTTCGTCGGTCAGCAGCATGATCTGCCGCGCACGCTCCAGAAACCGCTCACCCGCCTCGCTCATGCGCAGGCGCCGGGTGGTGCGGTGCAGCAGGCGGGTCTGCa                                                                                  <  2:415952/150‑1 (MQ=255)                                                tGGCCGCGAGGCGTAAGGTGCGCCCCTCGCGCCTCGCCCACGGCTTCTTCGGTCAGCAGCATGATCTGCCGCGCACGCTCCAGAAACCGCTCACCCGCCTCGCTCATGCGCAGGCGCCGGGTGGTGCGGTGCAGCAGGCGGGTCTGCAGc                                                                                <  2:22975/150‑1 (MQ=255)                                                            gTAAGGTGCGCCCCTCGCGCCTCGCCCACGGCTTCTTCGGTCAGCAGCATGATCTGCCGCGCACGCTCCAGAAACCGCTCACCCGCCTCGCTCATGCGCAGGCGCCGGGTGGTGCGGTGCAGCAGGCGGGTCTGCAGCTGGTTCTCCAGc                                                                    >  2:167312/1‑150 (MQ=255)                                                             tAAGGTGCGCCCCTCGCGCCTCGCCCACGGCTTCTTCGGTCAGCAGCATGATCTGCCGCGCACGCTCCAGAAACCGCTCACCCGCCTCGCTCATGCGCAGGCGCCGGGTGGTGCGGTGCAGCAGGCGGGTCTGCAGCTGGTTCTCCAGCt                                                                   >  1:547972/1‑150 (MQ=255)                                                                                  cGCCCACGGCTTCTTCGGTCAGCAGCATGATCTGCCGCGCACGCTCCAGAAACCGCTCACCCGCCTCGCTCATGCGCAGGCGCCGGGTGGTGCGGTGCAGCAGGCGGGTCTGCAGCTGGTTCTCCAGCTCGGCGACGATGCGCGAAACCt                                              <  1:467779/150‑1 (MQ=255)                                                                                     ccACGGCTTCTTCGGTCAGCAGCATGATCTGCCGCGCACGCTCCAGAAACCGCTCACCCGCCTCGCTCATGCGCAGGCGCCGGGTGGTGCGGTGCAGCAGGCGGGTCTGCAGCTGGTTCTCCAGCTCGGCGACGATGCGCGAAACCTgcg                                           >  2:320749/1‑150 (MQ=255)                                                                                        cGGCTTCTTCGGTCAGCAGCATGATCTGTCGCGCACGCTCCAGAAACCGCTCACCCGCCTCGCTCATGCGCAGGCGCCGGGTGGTGTGGTGCAGCAGGCGGGTCTGCAGCTGGATCTCAAGCTAGGCGACGATTCGTGTAACCTTCGCTg                                        >  2:5480/1‑150 (MQ=255)                                                                                                tcGGTCAGCAGCATGATCTGCCGCGCACGCTCCAGAAACCGCTCACCCGCCTCGCTCATGCGCAGGCGCCGGGTGGTGAGGTGCAGCAAGCGGGTCTCTACCTATTTCTGCAGCTCGGCGACGATGCGCGAAACCTGCGCTGCAGAAata                                <  1:320749/150‑1 (MQ=255)                                                                                                     cagcagCATGATCTGCCGCGCACGCTCCAGAAACCGCTCACCCGCCTCGCTCATGCGCAGGCGCCGGGTGGTGCGGTGCAGCAGGCGGGTCTGCAGCTGGTTCTCCAGCTCGGCGACGATGCGCGAAACCTGCGCTGCAGAAATATCCag                           <  1:445336/150‑1 (MQ=255)                                                                                                      ctggagaaccagctgcagacccgcctgctgcACCGCTCACCCGCCTCGCTCATGCGCAGGCGCCGGGTggtgcg                                                                                                      <  2:438652‑M1/43‑1 (MQ=255)                                                                                                      ctggagaaccagctgcagacccgcctgctgcACCGCTCACCCGCCTCGCTCATGCGCAGGCGCCGGGTggtgcg                                                                                                      >  1:438652‑M1/32‑74 (MQ=255)                                                                                                                      gcgcACGCTCCAGAAACCGCTCACCCGCCTCGCTCATGCGCAGGCGCCGGGTGGTGCGGTGCAGCAGGCGGGTCTGCAGCTGGTTCTCCAGCTCGGCGACGATGCGCGAAACCTGCGCTGCAGAAATATCCAGAGCATTGGCAGCTGCAg          <  1:167312/150‑1 (MQ=255)                                                                                                                       cgcACGCTCCAGAAACCGCTCACCCGCCTCGCTCATGCGCAGGCGCCGGGTGGTGCGGTGCAGCAGGCGGGTCTGCAGCTGGTTCTCCAGCTCGGCGACGATGCGCGAAACCTGCGCTGCAGAAATATCCAGAGCATTGGCAGCTGCAGc         <  1:511829/150‑1 (MQ=255)                                                                                                                          aCGCTCCAGAAACCGCTCACCCGCCTCGCTCATGCGCAGGCGCCGGGTGGTGCGGTGCAGCAGGCGGGTCTGCAGCTGGTTCTCCAGCTCGGCGACGATGCGCGAAACCTGCGCTGCAGAAATATCCAGAGCATTGGCAGCTGCAGCGaa      <  2:72273/150‑1 (MQ=255)                                                                                                                              tCCAGAAACCGCTCACCCGCCTCGCTCATGCGCAGGCGCCGGGTGGTGCGGTGCAGCAGGCGGGTCTGCAGCTGGTTCTCCAGCTCGGCGACGATGCGCGAAACCTGCGCTGCAGAAATATCCCGAGAATTGGCAGATGGACCGGAGcgg  >  2:343270/1‑148 (MQ=255)                                                                                                                                     |                                                                                                                                               GCGGCATCAGCAACAGCCCCATGCCGTGCGGGCAGTGCAAACGCAGATGGCCGCGAGGCGTAAGGTGCGCCCCTCGCGCCTCGCCCACGGCTTCTTCGGTCAGCAGCATGATCTGCCGCGCACGCTCCAGAAACCGCTCACCCGCCTCGCTCATGCGCAGGCGCCGGGTGGTGCGGTGCAGCAGGCGGGTCTGCAGCTGGTTCTCCAGCTCGGCGACGATGCGCGAAACCTGCGCTGCAGAAATATCCAGAGCATTGGCAGCTGCAGCGAAGCTG  >  NC_002947/3963723‑3963997

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.