New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4303036	22 (0.950)	3 (0.140)	3/238	NT	12.5%	coding (183/207 nt)	PP_5627	hypothetical protein
	?	NC_002947	= 4303050	21 (0.950)					coding (197/207 nt)	PP_5627	hypothetical protein

TCCCGTTGCGGCGCTGTCCCTTCCGACATACACCGTCACATCTACCGCCCACCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4302982‑4303036 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caccgg‑GCGCGCGCG‑GCGTACCGGTGGGCGGTAGATGTGACGGTGTATGTCGGAAGGGACAGCGCCGCAACGGGATTGCTCGGCAGCTCTATGATGTGCTGCTGCCGGTTCTGAAGCGTCTCGGATATCGCTCGGCGTATGCCGGCATTGC  <  NC_002947/4303050‑4302906                                                                                                                                                                                                            TCCCGTTGCGGCGCTGTCCCTTCCGACATACACCGTCACATCTACCGCCCACCGG‑GCGCGCGCG‑GCGTACCGGT                                                                                                                                >  1:251430/1‑74 TCCCGTTGCGGCGCTGTCCCTTCCGACATACACCGTCACATCTACCGCCCACCGG‑GCGCGCGCG‑GCGTACCGGT                                                                                                                                <  2:251430/74‑1                                    TCACATCTACCGCCCACCGGTACGC‑CGCGCGCG‑CCCGGTGGGCGGTAGATGTGACGGTGTATGTCGGAAGGGACAGCGCCGCAACGGGATTGCTCGGCAGCTCTATGATGTGCTGCTGCCGGTTCTGAAGCGTCTCGGATATCGCTCGGC                 >  1:377951/1‑150                                                   ACCGG‑GCGCGCGCG‑GCGTACCGGTGGGCGGTAGATGTGACGGTGTATGTCGGAAGGGACAGCGCCGCAACGGGATTGCTCGGCAGCTCTATGATGTGCTGCTGCCGGTTCTGAAGCGTCTCGGATATCGCTCGGCGTATGCCGGCATTGC  <  2:540314/150‑1                                                                                                                                                                                                            TCCCGTTGCGGCGCTGTCCCTTCCGACATACACCGTCACATCTACCGCCCACCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4302982‑4303036 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caccgg‑GCGCGCGCG‑GCGTACCGGTGGGCGGTAGATGTGACGGTGTATGTCGGAAGGGACAGCGCCGCAACGGGATTGCTCGGCAGCTCTATGATGTGCTGCTGCCGGTTCTGAAGCGTCTCGGATATCGCTCGGCGTATGCCGGCATTGC  <  NC_002947/4303050‑4302906

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.