| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4303036 | 22 (0.950) | 3 (0.140) | 3/238 | NT | 12.5% | coding (183/207 nt) | PP_5627 | hypothetical protein |
| ? | NC_002947 | = 4303050 | 21 (0.950) | coding (197/207 nt) | PP_5627 | hypothetical protein | |||||
GCAATGCCGGCATACGCCGAGCGATATCCGAGACGCTTCAGAACCGGCAGCAGCACATCATAGAGCTGCCGAGCAATCCCGTTGCGGCGCTGTCCCTTCCGACATACACCGTCACATCTACCGCCCACCGGTACGC‑CGCGCGCGC‑CCGGTGCTGACTGGCGTAGGTATAGCCGACTAGGTGTTTCACAAATAACGACCATAACTCGTGGCGCTTTTTGGTTGTATTTCCAAAACACCATACTAGCCAGCACCGATTCCTGTTTCAGGATAGGTAGACTGTGACCCGC > NC_002947/4302906‑4303192 | gCAATGCCGGCATACGCCGAGCGATATCCGAGACGCTTCAGAACCGGCAGCAGCACATCATAGAGCTGCCGAGCAATCCCGTTGCGGCGCTGTCCCTTCCGACATACACCGTCACATCTACCGCCCACCGGTACGC‑CGCGCGCGCccggt < 2:540314‑M2/150‑6 (MQ=255) aTGCCGGCATACGCCGAGCGATATCCGAGACGCTTCAGAACCGGCAGCAGCACATCATAGAGCTGCCGAGCAATCCCGTTGCGGCGCTGTCCCTTCCGACATACACCGTCACATCTACCGCCCACCGGTACGC‑CGCGCGCGC‑CCGGTGCt < 1:175057/150‑1 (MQ=255) gCCGAGCGATATCCGAGACGCTTCAGAACCGGCAGCAGCACATCATAGAGCTGCCGAGCAATCCCGTTGCGGCGCTGTCCCTTCCGACATACACCGTCACATCTACCGCCCACCGGG‑CGCGCGCG‑GCGTaccggtgggcggtagatgtga > 1:377951‑M2/1‑129 (MQ=255) ttCAGAACCGGCAGCAGCACATCATAGAGCTGCCGAGCAATCCCGTTGCGGCGCTGTCCCTTCCGACATACACCGTCACATCTACCGCCCACCGGTACGC‑CGCGCGCGC‑CCGGTGCTGACTGGCGTAGGTATAGCCGACTAGGTGTTTca > 1:543254/1‑150 (MQ=255) cagcaCATCATAGAGCTGCCGAGCAATCCCGTTGCGGCGCTGTCCCTTCCGACATACACCGTCACATCTACCGCCCACCGGTACTC‑CGCGCGCGC‑CCGGTGCTGACTGGCGTAGGTATAGCCGACTAGGTGTTTCACAAATAACGACCAt < 2:442780/150‑1 (MQ=255) acaTCATAGAGCTGCCGAGCAATCCCGTTGCGGCGCTGTCCCTTCCGACATACACCGTCACATCTACCGCCCACCGGTACGC‑CGCGCGCGC‑CCGGTGCTGACTGGCGTAGGTATAGCCGACTAGGTGTTTCACAAATAACGACCATAACt > 2:134580/1‑150 (MQ=255) catAGAGCTGCCGAGCAATCCCGTTGCGGCGCTGTCCCTTCCGACATACACCGTCACATCTACCGCCCACCGGTACGC‑CGCGCGCGC‑CCGGTGCTGACTGGCGTAGGTATAGCCGACTAGGTGTTTCACAAATAACGACCATAACTCGTg < 1:540314/150‑1 (MQ=255) ccGAGCAATCCCGTTGCGGCGCTGTCCCTTCCGACATACACCGTCACATCTACCGCCCACCGGTACGC‑CGCGCGCGC‑CCGGTGCTGACTGGCGTAGGTATAGCCGACTAGGTGTTTCACAAATAACGACCATAACTCGTGGCGCTTTTTg < 2:543254/150‑1 (MQ=255) cgagttatggtcgttatttgtgaaacacctagtcggctatacctacgccagtcagCACCGGTACGC‑CGCGCGCGC‑CCGGt < 2:518752‑M1/25‑1 (MQ=255) cgagttatggtcgttatttgtgaaacacctagtcggctatacctacgccagtcagCACCGGTACGC‑CGCGCGCGC‑CCGGt > 1:518752‑M1/56‑80 (MQ=255) aaTCCCGTTGCGGCGCTGTCCCTTCCGACATACACCGTCACATCTACCGCCCACCGGTACGC‑CGCGCGCGC‑CCGGTGCTGACTGGCGTAGGTATAGCCGACTAGGTGTTTCACAAATAACGACCATAACTCGTGGCGCTTTTTGGTTGTa < 1:134580/150‑1 (MQ=255) aTCCCGTTGCGGCGCTGTCCCTTCCGACATACACCGTCACATCTACCGCCCACCGGTACGC‑CGCGCGCGC‑CCGGTGCTGACTGGCGTAGGTATAGCCGACTAGGTGTTTCACAAATAACGACCATAACTCGTGGCGCTTTTTGGTTGTAt > 1:30345/1‑150 (MQ=255) ccTTCCGACATACACCGTCACATCTACCGCCCACCGGTACGC‑CGCGCGCGC‑CCGGTGCTGACTGGCGTAGGTATAGCCGACTAGGTGTTTCACAAATAACGACCATAACTCGTGGCGCTTTTTGGTTGTATTTCCAAAACACCATACTAg > 1:436746/1‑150 (MQ=255) ttCCGACATACACCGTCACATCTACCGCCCACCGGTACGC‑CGCGCGCGC‑CCGGTGCTGACTGGCGTAGGTATAGCCGACTAGGTGTTTCACAAATAACGa < 1:309971/100‑1 (MQ=255) ttCCGACATACACCGTCACATCTACCGCCCACCGGTACGC‑CGCGCGCGC‑CCGGTGCTGACTGGCGTAGGTATAGCCGACTAGGTGTTTCACAAATAACGa > 2:309971/1‑100 (MQ=255) cctagtcggctatacctacgccagtcagCACCGGG‑CGCGCGCG‑GCGTACCGGTGCTGACTGGCGTAGGTATAGCCGACTAGGTGTTTCACAAATAACGACCATAACTCGTGGCGCTTTTTGGTTGTATTTCCAAAACACCATACTAGCCa < 1:549237‑M1/122‑1 (MQ=255) aCATACACCGTCACATCTACCGCCCACCGGTACGC‑CGCGCGCGC‑CCGGTGCTGACTGGCGTAGGTATAGCCGACTAGGTGTTTCACAAATAACGACCATAACTCGTGGCGCTTTTTGGTTGTATTTCCAAAACACCATa < 2:371344/139‑1 (MQ=255) aCATACACCGTCACATCTACCGCCCACCGGTACGC‑CGCGCGCGC‑CCGGTGCTGACTGGCGTAGGTATAGCCGACTAGGTGTTTCACAAATAACGACCATAACTCGTGGCGCTTTTTGGTTGTATTTCCAAAACACCATa > 1:371344/1‑139 (MQ=255) cATACACCGTCACATCTACCGCCCACCGGTACGC‑CGCGCGCGC‑CCGGTGCTGACTGGCGTAGGTATAGCCGACTAGGTGTTTCACAAATAACGACCATAACTCGTGGCGCTTTTTGGTTGTATTTCCAAAACACCATACTAGCCAGCAcc > 2:388828/1‑150 (MQ=255) aTACACCGTCACATCTACCGCCCACCGGTACGC‑CGCGCGCGC‑CCGGTGCTGACTGGCGTCGGTATAGCCGAGTCAGCGTATTACCCTGGCCCACGACAACTCGGGGCGCTTTTTGGTTGTATTTCCAAAACACCATACTAGCCAGCACCg > 1:200859/1‑150 (MQ=18) acCGTCACATCTACCGCCCACCGGTACGC‑CGCGCGCGC‑CCGGTGCTGACTGGCGTAGGTATAGCCGACTAGGTGTTTCACAAATAACGACCATAACTCGTGGCGCTTTTTGGTTGTATTTCCAAAACACCATACTAGCCAGCACCGATTc > 1:387953/1‑150 (MQ=255) acCGTCACATCTACCGCCCACCGGTACGC‑CGCGCGCGC‑CCGGTGCTGACTGGCGTAGGTATAGCCGACTAGGTGTTTCACAAATAACGACCATAACTCGTGGCGCTTTTTAGTTGTATTTCCAAAACACCATAATACCCAGCACCGATTc > 2:580216/1‑150 (MQ=255) aTCTACCGCCCACCGGTACGC‑CGCGCGCGC‑CCGGTGCTGACTGGCGTAGGTATAGCCGACTAGGTGTTTCACAAATAACGACCATAACTCGTGGCGCTTTTTGGTTGTATTTCCAAAACACCATACTAGCCAGCACCGATTCCTGTTTCa > 1:584464/1‑150 (MQ=255) tCTACCGCCCACCGGTACGC‑CGCGCGCGC‑CCGGTGCTGACTGGCGTAGGTATAGCCGACTAGGTGTTTCACAAATAACGACCATAACTCGTGGCGCTTTTTGGTTGTATTTCCAAAACACCa < 2:572190/122‑1 (MQ=255) tCTACCGCCCACCGGTACGC‑CGCGCGCGC‑CCGGTGCTGACTGGCGTAGGTATAGCCGACTAGGTGTTTCACAAATAACGACCATAACTCGTGGCGCTTTTTGGTTGTATTTCCAAAACACCa > 1:572190/1‑122 (MQ=255) aCCGGTACGC‑CGCGCGCGCccggtgggcggtagatgtgacggtgtatgtcggaagggacagcgccgcaacggga < 2:251430‑M2/74‑56 (MQ=255) aCCGGTACGC‑CGCGCGCGCccggtgggcggtagatgtgacggtgtatgtcggaagggacagcgccgcaacggga > 1:251430‑M2/1‑19 (MQ=255) CGGTACGC‑CGCGCGCGC‑CCGGTGCTGACTGGCGTAGGtat < 2:136111‑M1/40‑1 (MQ=255) CGGTACGC‑CGCGCGCGC‑CCGGTGCTGACTGGCGTAGGtat > 1:136111‑M1/1‑40 (MQ=255) aCGC‑CGCGCGCGC‑CCGGTGCTGACTGGCGTAGGTATAGCCGACTAGGTGTTTCACAAATAACGACCATAACTCGTGGCGCTTTTTGGTTGTATTTCCAAAACACCATACTAGCCAGCACCGATTCCTGTTTCAGGATAGGTAGACTGTGa < 2:30345/150‑1 (MQ=255) gcgcgcgc‑CCGGTGCTGACTGGCGTAGGTATAGCCGACTAGGTGTTTCACAAATAACGACCATAACTCGTGGCGCTTTTTGGTTGTATTTCCAAAACACCATACTAGCCAGCACCGATTCCTGTTTCAGGATAGGTAGACTGTGACCcgc > 2:516906/1‑150 (MQ=255) gc‑CCGGTGCTGACTGGCGTAGGTATAGCCGACTAGGTGTTTCACAAATaa < 2:329438/50‑1 (MQ=255) gc‑CCGGTGCTGACTGGCGTAGGTATAGCCGACTAGGTGTTTCACAAATaa > 1:329438/1‑50 (MQ=255) | GCAATGCCGGCATACGCCGAGCGATATCCGAGACGCTTCAGAACCGGCAGCAGCACATCATAGAGCTGCCGAGCAATCCCGTTGCGGCGCTGTCCCTTCCGACATACACCGTCACATCTACCGCCCACCGGTACGC‑CGCGCGCGC‑CCGGTGCTGACTGGCGTAGGTATAGCCGACTAGGTGTTTCACAAATAACGACCATAACTCGTGGCGCTTTTTGGTTGTATTTCCAAAACACCATACTAGCCAGCACCGATTCCTGTTTCAGGATAGGTAGACTGTGACCCGC > NC_002947/4302906‑4303192 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |