New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4993002	29 (1.250)	3 (0.140)	3/236	NT	9.8%	coding (911/1233 nt)	bkdAA	branched‑chain alpha‑keto acid dehydrogenase complex subunit alpha
	?	NC_002947	= 4993024	28 (1.280)					coding (933/1233 nt)	bkdAA	branched‑chain alpha‑keto acid dehydrogenase complex subunit alpha

GGTGGCGAGTCGACCACCTTTGCCGGCCGTGGCGTGGGTTGCGGTATTGCTTCGCTGCGGGTTGACGGCAACGACTTCGTCGCCGTGTACGCTGCCTCGCGCTGGGCGGCCGAGCGCGCCCGCCGCGGCCTGGGCCCAAGCCTGATCGAGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4992851‑4993002 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgagtgCGGGCCGGCACGGTAGGTGACCCACTCGATCAGGCTTGGGCCCAGGCCGCGGCGGGCGCGCTCGGCCGCCCAGCGCGAGGCAGCGTACACGGCGACGAAGTCGTTGCCGTCAACCCGCAGCGAAGCAATACCGCAACCCACGCCA  <  NC_002947/4993024‑4992880                                                                                                                                                                                                                                                                                                           GGTGGCGAGTCGACCACCTTTGCCGGCCGTGGCGTGGGTTGCGGTATTGCTTCGCTGCGGGTTGACGGCAACGACTTCGTCGCCGTGTACGCTGCCTCGCGCTGGGCGGCCGAGCGCGCCCGCCGCGGCCTGGGCCCAAGCCTGATCGAG                                                                                                                                                     <  2:452646/150‑1  GTGGCGAGTCGACCACCTTTGCCGGCCGTGGCGTGGGTTGCGGTATTGCTTCGCTGCGGGTTGACGGCAACGACTTCGTCGCCGTGTACGCTGCCTCGCGCTGGGCGGCCGAGCGCGCCCGCCGCGGCCTGGGCCCAAGCCTGATCGAGT                                                                                                                                                    <  1:209538/150‑1                                           GGTATTGCTTCGCTGCGGGTTGACGGCAACGACTTCGTCGCCGTGTACGCTGCCTCGCGCTGGGCGGCCGAGCGCGCCCGCCGCGGCCTGGGCCCAAGCCTGATCGAGTGCGGGCCGGCACGGTAGGTGACCCACTCGATCAGGCTTGGG                                                                                                           <  2:291253/150‑1                                                            GGTTGACGGCAACGACTTCGTCGCCGTGTACGCTGCCTCGCGCTGGGCGGCCGAGCGCGCCCGCCGCGGCCTGGGCCCAAGCCTGATCGAGTGCGGGCCGGCACGGTAGGTGACCCACTCGATC                                                                                                                    >  1:404096/1‑124                                                            GGTTGACGGCAACGACTTCGTCGCCGTGTACGCTGCCTCGCGCTGGGCGGCCGAGCGCGCCCGCCGCGGCCTGGGCCCAAGCCTGATCGAGTGCGGGCCGGCACGGTAGGTGACCCACTCGATC                                                                                                                    <  2:404096/124‑1                                                                                                                                                    GAGTGCGGGCCGGCACGGTAGGTGACCCACTCGATCAGGCTTGGGCCCAGGCCGCGGCGGGCGCGCTCGGCCGCCCAGCGCGAGGCAGCGTACACGGCGACGAAGTCGTTGCCGTCAACCCGCAGCGAAGCAATACCGCAACCCACGCCA  >  2:562802/1‑150                                                                                                                                                                                                                                                                                                           GGTGGCGAGTCGACCACCTTTGCCGGCCGTGGCGTGGGTTGCGGTATTGCTTCGCTGCGGGTTGACGGCAACGACTTCGTCGCCGTGTACGCTGCCTCGCGCTGGGCGGCCGAGCGCGCCCGCCGCGGCCTGGGCCCAAGCCTGATCGAGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4992851‑4993002 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgagtgCGGGCCGGCACGGTAGGTGACCCACTCGATCAGGCTTGGGCCCAGGCCGCGGCGGGCGCGCTCGGCCGCCCAGCGCGAGGCAGCGTACACGGCGACGAAGTCGTTGCCGTCAACCCGCAGCGAAGCAATACCGCAACCCACGCCA  <  NC_002947/4993024‑4992880

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.