New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5245198 =	20 (0.870)	4 (0.180)	4/234	NT	18.7%	coding (557/834 nt)	hmgR	Hmg transcriptional repressor
	?	NC_002947	5245249 =	16 (0.740)					coding (608/834 nt)	hmgR	Hmg transcriptional repressor

CCATGTTCATCGGCATGGAAGATCGACGTCGGCCCGACCACGGTCATCACCGCGGCGATCTGCCCCATGGCGTTGAATACCGGCGCCGACAGCGCATCCACCCCCGGCATCAGCAGGCCATGCACATGGTGCAGGCCCTTTTCGCGGATGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5245351‑5245198 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatgccggGGGTGGATGCGCTGTCGGCGCCGGTATTCAACGCCATGGGGCAGATCGCCGCGGTGATGACCGTGGTCGGGCCGACGTCGATCTTCCATGCCGATGAACATGGGCCGG  >  NC_002947/5245249‑5245356                                                                                                                                                                                                                                                                        CCATGTTCATCGGCATGGAAGATCGACGTCGGCCCGACCACGGTCATCACCGCGGCGATCTGCCCCATGGCGTTGAATACCGGCGCCGACAGCGCATCCACCCCCGGCATCAGCAGGCCATGCACATGGTGCAGGCCCTTTTCGCGGATG                                                                                                                  >  2:336298/1‑150   ATGTTGATCGGCATGGAAGATCGACGTCGGCCCGACCACGGTCATCACCGCGGCGATCTGCCCCATGGCGTTGAATACCGGCGCCGACAGCGCATCCACCCCCGGCATCAGCAGGCCATGCACATGGTGCAGGCCCTTTTCGCGGATGCC                                                                                                                >  2:331617/1‑150                          ACGTCGGCCCGACCACGGTCATCACCGCGGCGATCTGCCCCATGGCGTTGAATACCGGCGCCGACAGCGCATCCACCCCCGGCATCAGCAGGCCATGCACATGGTGCAGGCCCTTTTCGCGGATGCC                                                                                                                <  1:577302/127‑1                          ACGTCGGCCCGACCACGGTCATCACCGCGGCGATCTGCCCCATGGCGTTGAATACCGGCGCCGACAGCGCATCCACCCCCGGCATCAGCAGGCCATGCACATGGTGCAGGCCCTTTTCGCGGATGCC                                                                                                                >  2:577302/1‑127                                                                                                      CCCCGGCATCAGCAGGCCATGCACATGNTGCAGGCCCTTTNCGCGGANGCCGGGGGTGGATGCGCTGTCGGCGCCGGTATTCAACGCCATGGGGCAGATCGCCGCGGTGATGACCGTGGTCGGGCCGACGTCGATCTTCCATGCCGATGA             >  1:468386/1‑150                                                                                                        CCGGCATCAGCAGGCCATGCACATGGTGCAGGCCCTTTTCGCGGATGCCGGGGGTGGATGCGCTGTCGGCGCCGGTATTCAACGCCATGGGGCAGATCGCCGCGGTGATGACCGTGGTCGGGCCGACGTCGATCTTCCATGCCGATGAAC           >  1:103355/1‑150                                                                                                         CGGCATCAGCCGGCCATGCACATGGTGCAGGCCCTTTTCGCGGATGCCGGGGGTGGATGCGCTGTCGGCGCCGGTATTCAACGCCATGGGGCAGATCGCCGCGGTGATGACCGTGGTCGGGCCGACGTCGAT                            <  1:436330/132‑1                                                                                                         CGGCATCAGCAGGCCATGCACATGGTGCAGGCCCTTTTCGCGGATGCCGGGGGTGGATGCGCTGTCGGCGCCGGTATTCAACGCCATGGGGCAGATCGCCGCGGTGATGACCGTGGTCGGGCCGACGTCGAT                            >  2:436330/1‑132                                                                                                                                                        CGGGGGTGGATGCGCTGTCGGCGCCGGTATTCAACGCCATGGGGCAGATCGCCGCGGTGATGACCGTGGTCGGGCCGACGTCGATCTTCCATGCCGATGAACATGGGCCGG  <  1:55826/111‑1                                                                                                                                                        CGGGGGTGGATGCGCTGTCGGCGCCGGTATTCAACGCCATGGGGCAGATCGCCGCGGTGATGACCGTGGTCGGGCCGACGTCGATCTTCCATGCCGATGAACATGGGCCGG  >  2:55826/1‑111                                                                                                                                                                                                                                                                        CCATGTTCATCGGCATGGAAGATCGACGTCGGCCCGACCACGGTCATCACCGCGGCGATCTGCCCCATGGCGTTGAATACCGGCGCCGACAGCGCATCCACCCCCGGCATCAGCAGGCCATGCACATGGTGCAGGCCCTTTTCGCGGATGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5245351‑5245198 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatgccggGGGTGGATGCGCTGTCGGCGCCGGTATTCAACGCCATGGGGCAGATCGCCGCGGTGATGACCGTGGTCGGGCCGACGTCGATCTTCCATGCCGATGAACATGGGCCGG  >  NC_002947/5245249‑5245356

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.