New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5245198 =	20 (0.870)	4 (0.180)	4/234	NT	18.7%	coding (557/834 nt)	hmgR	Hmg transcriptional repressor
	?	NC_002947	5245249 =	16 (0.740)					coding (608/834 nt)	hmgR	Hmg transcriptional repressor

TTCGCCGCCTACCTGCCCGAGCGAGAAACCCAGGAGCTGCGCGACAGGGAACTGGCCGCTTTGCAACAAACCGCCAGTGACTATCACACACTGCTGGCCGGCATCCGCGAAAAGGGCCTGCACCATGTGCATGGCCTGCTGATGCCGGGGGTGGATGCGCTGTCGGCGCCGGTATTCAACGCCATGGGGCAGATCGCCGCGGTGATGACCGTGGTCGGGCCGACGTCGATCTTCCATGCCGATGAACATGGGCCGGCGGCGCAGAGCCTGCTCACGGCCGCACGAACCGTGAGCTGGC  >  NC_002947/5245101‑5245398                                                                                                                                                     |                                                                                                                                                      ttCGCCGCCTACCTGCCCGAGCGAGAAACCCAGGAGCTGCGCGACAGGGAACTGGCCGCTTTGCAACAAACCGCCAGTGACTATCACACACTGCTGGCCGGCATCCGCGAAAAGGGCCTGCACCATGTGCATGGCCTGCTGATGCCgggg                                                                                                                                                      <  1:263266/150‑1 (MQ=255) tcatcggcatggaagatcgacgtcggcccgaccacggtcatcaccgcggcgatctgccccatggcgttgaataccggcgccgacagcgcatccacccCCGGCNTCCGCGNAAAGGGCCTGCANCATGTGCATGGCCTGCTGATGCCgggg                                                                                                                                                      >  1:468386‑M1/98‑150 (MQ=255)      cgccTACCTGCCCGAGCGAGAAACCCAGGAGCTGCGCGACAGGGAACTGGCCGCTTTGCAACAAACCGCCAGTGACTATCACACACTGCTGGCCGGCATCCGCGAAAAGGGCCTGCACCATGTGCATGGCCTGCTGATGCCGGGGGTGGa                                                                                                                                                 <  1:166821/150‑1 (MQ=255)                cccGAGCGAGAAACCCAGGAGCTGCGCGACAGGGAACTGGCCGCTTTGCAACAAACCGCCAGTGACTATCACACACTGCTGGCCGGCATCCGCGAAAAGGGCCTGCACCATGTGCATGGCCTGCTGATGCCGGGGGTGGATGCGCTGTCg                                                                                                                                       <  2:589575/150‑1 (MQ=255)                       gagaAACCCAGGAGCTGCGCGACAGGGAACTGGCCGCTTTGCAACAAACCGCCAGTGACTATCACACACTGCTGGCCGGCATCCGCGAAAAGGGCCTGCACCATGTGCATGGCCTGCTGATGCCGGGGGTGGATGCGCTGTCGGCGCCgg                                                                                                                                >  1:79101/1‑150 (MQ=255)                                                     tGGCCGCTTTGCAACAAACCGCCAGTGACTATCACACACTGCTGGCCGGCATCCGCGAAAAGGGCCTGCACCATGTGCATGGCCTGCTGATGCCGGGGGTGGATGCGCTGTCGGCGCCGGTATTCAACGCCATGGGGCAGATCGCCGCgg                                                                                                  >  1:333777/1‑150 (MQ=255)                                                         cGCTTTGCAACAAACCGCCAGTGACTATCACACACTGCTGGCCGGCATCCGCGAAAAGGGCCTGCACCATGTGCATGGCCTGCTGATGCCGGGGGTGGATGCGCTGTCGGCGCCGGTATTCAACGCCATGGGGCAGATCGCCGCGGtgat                                                                                              <  2:316502/150‑1 (MQ=255)                                                           cTTTGCAACAAACCGCCAGTGACTATCACACACTGCTGGCCGGCATCCGCGAAAAGGGCCTGCACCATGTGCATGGCCTGCTGATGCCGGGGGTGGATGCGCTGTCGGCGCCGGTATTCAACGCCATGGGGCAGATCGCCGCGGtgatga                                                                                            >  1:331617/1‑150 (MQ=255)                                                             ttGCAACAAACCGCCAGTGACTATCACACACTGCTGGCCGGCATCCGCGAAAAGGGCCTGCACCATGTGCATGGCCTGCTGATGCCGGGGGTGGATGCGCTGTCGGCGCCGGTATTCAACGCCATGGGGCAGATCGCCGCGGTGATGAcc                                                                                          <  1:421450/150‑1 (MQ=255)                                                               gCAACAAACCGCCAGTGACTATCACACACTGCTGGCCGGCATCCGCGAAAAGGGCCTGCACCATGTGCATGGCCTGCTGATGTCGGGGGTCGATGCGCCGTCGGCCCCGGCATTCAACGCCACGGGGCAGATCGCCGCGGTGATGACCGt                                                                                        <  1:476038/150‑1 (MQ=255)                                                                      aCCGCCAGTGACTATCACACACTGCTGGCCGGCATCCGCGAAAAGGGCCTGCACCATGTGCATGGCCTGCTGATGCCGGGGGTGGATGCGCTGTCGGCGCCGGTATTCAACGCCATGGGGCAGATCGCCGCGGTGATGACCGTGGTCggg                                                                                 >  1:135070/1‑150 (MQ=255)                                                                                  tATCACACACTGCTGGCCGGCATCCGCGAAAAGGGCCTGCACAATGTGCATGGCCTGCTGATGCCGGGGGTGGATGCGCTGTCGGCGCCGGTATTCAACGCCATGGGGCAGATCGCCGCGGTGATGACCGTGGTCGGGCCGACGTCGATc                                                                     >  1:208638/1‑150 (MQ=255)                                                                                     cacacaCTGCTGGCCGGCATCCGCGAAAAGGGCCTGCACCATGTGCATGGCCTGCTGATGCCGGGGGTGGATGCGCTGTCGGCGCCGGTATTCAACGCCATGGGGCAGATCGCCGCGGTGATGACCGTGGTCGGGCCGACGTCGATCTTc                                                                  <  1:368720/150‑1 (MQ=255)                                                                                       cacacTGCTGGCCGGCATCCGCGAAAAGGGCCTGCACCATTTGCATGGCCTGCTGATGCCGGGGGTGGATGCGCTGTCGGCGCCGGTATTCAACGCCATGGGGCAGATCGCCGCGGTGATGACCGTGGTCGGGCCGACGTCGATCTTCCa                                                                <  2:146729/150‑1 (MQ=255)                                                                                        acacTGCTGGCCGGCATCCGCGAAAAGGGCCTGCACCATGTGCATGGCCTGCTGATGCCGGGGGTGGATGCGCTGTCGGCGCCGGTATTCAACGCCATGGGGCAGATCGCCGCGGTGATGACCGTGGTCGGGCCGACGTCGATCTTCCAt                                                               >  2:131518/1‑150 (MQ=255)                                                                                          acTGCTGGCCGGCATCCGCGAAAAGGGCCTGCACCATGTGCATGGCCTGCTGATGCCGGGGGTGGATGCGCTGTCGGCGCCGGTATTCAACGCCATGGGGCAGATCGCCGCGGTGATGACCGTGGTCGGGCCGACGTCGATCTTCCATGc                                                             >  1:146136/1‑150 (MQ=255)                                                                                                ccccggcatcagcaggccatgcacatgntgcaggccctttncgcggangccggGGGTGGATGCGCTGTCGGCGCCGGTATTCAACGCCATGGGGCAGATCGCCGCGGTGATGACCGTGGTCGGGCCGACGTCGATCTTCCATGCCGATGa                                                       >  1:468386‑M2/54‑150 (MQ=255)                                                                                                  ccggcatcagcaggccatgcacatggtgcaggcccttttcgcggatgccggGGGTGGATGCGCTGTCGGCGCCGGTATTCAACGCCATGGGGCAGATCGCCGCGGTGATGACCGTGGTCGGGCCGACGTCGATCTTCCATGCCGATGAAc                                                     >  1:103355‑M2/52‑150 (MQ=255)                                                                                                   cggcatcagccggccatgcacatggtgcaggcccttttcgcggatgccggGGGTGGATGCGCTGTCGGCGCCGGTATTCAACGCCATGGGGCAGATCGCCGCGGTGATGACCGTGGTCGGGCCGACGTCGAt                                                                      <  1:436330‑M2/82‑1 (MQ=255)                                                                                                   cggcatcagcaggccatgcacatggtgcaggcccttttcgcggatgccggGGGTGGATGCGCTGTCGGCGCCGGTATTCAACGCCATGGGGCAGATCGCCGCGGTGATGACCGTGGTCGGGCCGACGTCGAt                                                                      >  2:436330‑M2/51‑132 (MQ=255)                                                                                                    GGCATCCGCGAAAAGGGCCTGCACCATGTGCATGGCCTGCTGATGCCGGGGGTGGATGCGCTGTCGGCGCCGGTATTCAACGCCATGGGGCAGATCGCCGCGGTGATGACCGTGGTCGGGCCGACGt                                                                          <  1:577302‑M1/127‑1 (MQ=255)                                                                                                    GGCATCCGCGAAAAGGGCCTGCACCATGTGCATGGCCTGCTGATGCCGGGGGTGGATGCGCTGTCGGCGCCGGTATTCAACGCCATGGGGCAGATCGCCGCGGTGATGACCGTGGTCGGGCCGACGt                                                                          >  2:577302‑M1/1‑127 (MQ=255)                                                                                                    GGCATCCGCGAAAAGGGCCTGCACCATGTGCATGGCCTGCTGATGCCGGGGGTGGATGCGCTGTCGGCGCCGGTATTCAACGCCATGGGGCAGATCGCCGCGGTGATGACCGTGGTCGGGCCGACGTCGATCTTCCATGCCGATCAACAt                                                   >  2:331617‑M1/1‑150 (MQ=255)                                                                                                      CATCCGCGAAAAGGGCCTGCACCATGTGCATGGCCTGCTGATGCCGGGGGTGGATGCGCTGTCGGCGCCGGTATTCAACGCCATGGGGCAGATCGCCGCGGTGATGACCGTGGTCGGGCCGACGTCGATCTTCCATGCCGATGAACATgg                                                 >  2:336298‑M1/1‑150 (MQ=255)                                                                                                                                   aTGGCCTGCTGATGCCGGGGGTGGATGCGCTGTCGGCGCCGGTATTCAACGCCATGGGGCAGATCGCCGCGGTGATGACCGTGGTCGGGCCGACGTCGATCTTCCATGCCGATGAACATGGGCCGGCGGCGCAGAGCCTGCTCACGGCCg                    <  2:586705/150‑1 (MQ=255)                                                                                                                                   aTGGCCTGCTGATGCCGGGGGTGGATGCGCTGTCGGCGCCGGTATTCAACGCCATGGGGCAGATCGCCGCGGTGATGACCGTGGTCGGGCCGACGTCGATCTTCCATGCCGATGAACACGGGCCGGCGGCGCAGAGCCTGCTCACGGCCg                    <  1:128927/150‑1 (MQ=255)                                                                                                                                         tgctgATGCCGGGGGTGGATGCGCTGTCGGCGCCGGTATTCAACGCCATGGGGCAGATCGCCGCGGTGATGACCGTGGTCGGGCCGACGTCGATCTTCCATGCCGATGAACATGGGCCGGCGGCGCAGAGc                                 >  1:17440/1‑131 (MQ=255)                                                                                                                                         tgctgATGCCGGGGGTGGATGCGCTGTCGGCGCCGGTATTCAACGCCATGGGGCAGATCGCCGCGGTGATGACCGTGGTCGGGCCGACGTCGATCTTCCATGCCGATGAACATGGGCCGGCGGCGCAGAGc                                 <  2:17440/131‑1 (MQ=255)                                                                                                                                            tgATGCCGGGGGTGGATGCGCTGTCGGCGCCGGTATTCAACGCCATGGGGCAGATCGCCGCGGTGATGACCGGGGTCGGGCCGACGTCGATCTTCCATGCCGATGAACATGGGCCGGCGGCGCAGAGCCTGCTCACGGCCGCACGAACCg           >  1:137879/1‑150 (MQ=255)                                                                                                                                                  cggGGGTGGATGCGCTGTCGGCGCCGGTATTCAACGCCATGGGGCAGATCGCCGCGGTGATGACCGTGGTCGGGCCGACGTCGATCTTCCATGCCGATGAACATGGGCcgg                                            >  2:55826‑M2/4‑111 (MQ=255)                                                                                                                                                  cggGGGTGGATGCGCTGTCGGCGCCGGTATTCAACGCCATGGGGCAGATCGCCGCGGTGATGACCGTGGTCGGGCCGACGTCGATCTTCCATGCCGATGAACATGGGCcgg                                            <  1:55826‑M2/108‑1 (MQ=255)                                                                                                                                                     gggTGGATGCGCTGTCGGCGCCGGTATTCAACGCCATGGGGCAGATCGCCGCGGTGATGACCGTGGTCGGGCCGACGTCGATCTTCCATGCCGATGAACATGGGCCGGCGGCGCAGAGCCTGCTCACGGCCGCACGAACCGTGAGCTGgc  <  1:512769/150‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                      TTCGCCGCCTACCTGCCCGAGCGAGAAACCCAGGAGCTGCGCGACAGGGAACTGGCCGCTTTGCAACAAACCGCCAGTGACTATCACACACTGCTGGCCGGCATCCGCGAAAAGGGCCTGCACCATGTGCATGGCCTGCTGATGCCGGGGGTGGATGCGCTGTCGGCGCCGGTATTCAACGCCATGGGGCAGATCGCCGCGGTGATGACCGTGGTCGGGCCGACGTCGATCTTCCATGCCGATGAACATGGGCCGGCGGCGCAGAGCCTGCTCACGGCCGCACGAACCGTGAGCTGGC  >  NC_002947/5245101‑5245398

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.