New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5647180 =	31 (1.340)	3 (0.140)	3/238	NT	8.8%	coding (459/738 nt)	PP_4955	hypothetical protein
	?	NC_002947	5647224 =	33 (1.500)					coding (415/738 nt)	PP_4955	hypothetical protein

CGCCTATTCACCGGAATTCGACGGGGATCCCCGTCTGCACAAAGTGCCGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5647231‑5647180 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggtgAATAGGCGTAATCACGCACTACGGCAATGCTATAGGCATAAAGGTCAGACAGACGCTTGTAGCTAAACGCCTCGCCCTTACGCTGCAGCAGGCGAATACGATTACTCAGGTAGGCGCTGGAGAATTGCCCGATATTGGCGCGCGAGT  >  NC_002947/5647224‑5647370                                                                                                                                                                                                         cgaCTATTCACCGGAATTCGACGGGGATCCCCGTCTGCACAAAGTGCCGGTGAATAGGCGTAATCACGCACTACGGCAATGCTATAGGCATAAAGGTCAGACAGACGCTTGTAGCTAAACGCCTCGCCCTTACGCTGCAGCAGGCGAATA                                                   <  1:67708/147‑1    CTATTCACCGGAATTCGACGGGGATCCCCGTCTGCACAAAGTGCCGGTGAATAGGCGTAATCACGCACTACGGCAATGCTATAGGCATAAAGGTCAGACAGACGCTTGTAGCTAAACGCCTCGCCCTTACGCTGCAGCAGGCGAATACGA                                                >  1:441664/1‑150            CGGAATTCGACGGGGATCCCCGTCTGCACAAAGTGCCGGTGAATAGGCGTAATCACGCACTACGGCAATGCTATAGGCATAAAGGTCAGACAGACGCTTGTAGCTAAACGCCTCGCCCTTACGCTGCAGCAGGCGAATACGATTACTCAG                                        <  2:441664/150‑1                                                 gtTGAATAGGCGTAATCACGCACTACGGCAATGCTATAGGCATAAAGGTCAGACAGACGCTTGTAGCTAAACGCCTCGCCCTTACGCTGCAGCAGGCGAATACGATTACTCAGGTAGGCGCTGCAGAATTGCCCGATATTGGCGCGCGAG   <  1:295873/148‑1                                                  GTGAATAGGCGTAATCACGCACTACGGCAATGCTATAGGCATAAAGGTCAGACAGACGCTTGTAGCTAAACGCCTCGCCCTTACGCTGCAGCAGGCGAATACGATTACTCAGGTAGGCGCTGGAGAATTGCCCGATATTGGCGCGCGAGT  >  1:439176/1‑150                                                                                                                                                                                                         CGCCTATTCACCGGAATTCGACGGGGATCCCCGTCTGCACAAAGTGCCGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5647231‑5647180 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggtgAATAGGCGTAATCACGCACTACGGCAATGCTATAGGCATAAAGGTCAGACAGACGCTTGTAGCTAAACGCCTCGCCCTTACGCTGCAGCAGGCGAATACGATTACTCAGGTAGGCGCTGGAGAATTGCCCGATATTGGCGCGCGAGT  >  NC_002947/5647224‑5647370

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.