New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5647180 =	31 (1.340)	3 (0.140)	3/238	NT	8.8%	coding (459/738 nt)	PP_4955	hypothetical protein
	?	NC_002947	5647224 =	33 (1.500)					coding (415/738 nt)	PP_4955	hypothetical protein

TGCGGCTCACGCTGCAGGTTGTAGCGGGCCACGTACTCGTCTTCCACCGCCAGGCTTACCCGCCCTGCCGCCAACATGCGTACCGCAGAAGAAAAGTTGCGCACCGGCACTTTGTGCAGACGGGGATCCCCGTCGAATTCCGGTGAATAGGCGTAATCACGCACTACGGCAATGCTATAGGCATAAAGGTCAGACAGACGCTTGTAGCTAAACGCCTCGCCCTTACGCTGCAGCAGGCGAATACGATTACTCAGGTAGGCGCTGGAGAATTGCCCGATATTGGCGCGCGAGT  >  NC_002947/5647079‑5647370                                                                                                                                                  |                                                                                                                                                   tcgtattcgcctgctgcagcgtaagggcgaggcgtttagctacaagcgtctgtctgacctttatgcctatagcattgccgtagtgcgtgattacgcctattCACCGGCACTTTGTGCAGACGGGGATCCCCGTCGAATTCCGGTGAATAg                                                                                                                                                >  1:441664‑M1/102‑150 (MQ=255) tGCGGCTCACGCTGCAGGTTGTAGCGGGCCACGTACTCGTCTTCCACCGCCAGGCTTACCCGCCCTGCCGCCAACATGCGTACCGCAGAAGAAAAGTTGCGCACCGGCACTTTGTGCAGACGGGGATCCCCGTCGAATTCCGGTGAATAg                                                                                                                                                <  1:285032/150‑1 (MQ=255)   cGGCTCACGCTGCAGGTTGTAGCGGGCCACGTACTCGTCTTCCACCGCCAGGCTTACCCGCCCTGCCGCCAACATGCGTACCGCAGAAGAAAAGTTGCGCACCGGCACTTTGTGCAGACGGGGATCCCCGTCGAATTCCGGTGAATAGGc                                                                                                                                              <  1:287690/150‑1 (MQ=255)    tattcgcctgctgcagcgtaagggcgaggcgtttagctacaagcgtctgtctgacctttatgcctatagcattgccgtagtgcgtgattacgcctattCACCGGCACTTTGTGCAGACGGGGATCCCCGTCGAATTCCGGTGAatagtcg                                                                                                                                             <  1:67708‑M1/52‑4 (MQ=255)                             ccgatctcTCGTCTTCCACCGCCAGGCTTACCCGCCCTGCCGCCAACATGCGTACCGCAGAAGAAAAGTTGCGCACCGGCACTTTGTGCAGACGGGGATCCCCGTCGAATTCCGGTGACTAGTCGTAATCACGCACTACGGCAATGCtat                                                                                                                    <  1:173820/143‑1 (MQ=255)                               aCGTACTCGTCTTCCACCGCCAGGCTTACCCGCCCTGCCGCCAACATGCGTACCGCAGAAGAAAAGTTGCGCACCGGCACTTTGTGCAGACGGGGATCCCCGTCGAATTCCGGTGAATAGGCGTAATCACGCACTACGGCAATGCTATAg                                                                                                                  <  1:185541/150‑1 (MQ=255)                                   aCTCGTCTTCCACCGCCAGGCTTACCCGCCCTGCCGCCAACATGCGTACCGCAGAAGAAAAGTTGCGCACCGGCACTTTGTGCAGACGGGGATCCCCGTCGAATTCCGGTGAATAGGCGTAATCACGCACTACGGCAATGCTATAGGCAt                                                                                                              <  2:611437/150‑1 (MQ=255)                                     tCGTCTTCCACCGCCAGGCTTACCCGCCCTGCCGCCAACATGCGTACCGCAGAAGAAAAGTTGCGCACCGGCACTTTGTGCAGACGGGGATCCCCGTCGCATGCCGGTGAATAGGCGTAATCACGCACTACGGCAATGCtataagatcgg                                                                                                            >  2:173820/1‑143 (MQ=255)                                     tCGTCTTCCACCGCCAGGCTTACCCGCCCTGCCGCCAACATGCGTACCGCAGAAGAAAAGTTGCGCACCGGCACTTTGTGCAGACGGGGATCCCCGTCGAATTCCGGTGAATAGGCGTAATCACGCACTACGGCAATGCTATAGGCATaa                                                                                                            >  2:353884/1‑150 (MQ=255)                                     tCGTCTTCCACCGCCAGGCTTACCCGCCCTGCCGCCAACATGCGTACCGCAGAAGAAAAGTTGCGCACCGGCACTTTGTGCAGACGGGGATCCCCGTCGAATTCCGGTGAATAGGCGTAATCACGCACTACGGCAATGCTATAGGCATaa                                                                                                            >  2:200749/1‑150 (MQ=255)                                     tCGTCTTCCACCGCCAGGCTTACCCGCCCTGCCGCCAACATGCGTACCGCAGAAGAAAAGTTGCGCACCGGCACTTTGTGCAGACGGGGATCCCCGTCGAATTCCGGTGAATAGGCGTAATCACGCACTACGGCAATGCTATAGGCATaa                                                                                                            >  1:459783/1‑150 (MQ=255)                                       gTCTTCCACCGCCAGGCTTACCCGCCCTGCCGCCAACATGCGTACCGCAGAAGAAAAGTTGCGCACCGGCACTTTGTGCAGACGGGGATCCCCGTCGAATTCCGGTGAATAGGCGTAATCACGCACTACgg                                                                                                                             <  2:470685/131‑1 (MQ=255)                                       gTCTTCCACCGCCAGGCTTACCCGCCCTGCCGCCAACATGCGTACCGCAGAAGAAAAGTTGCGCACCGGCACTTTGTGCAGACGGGGATCCCCGTCGAATTCCGGTGAATAGGCGTAATCACGCACTACgg                                                                                                                             >  1:470685/1‑131 (MQ=255)                                          ttCCACCGCCAGGCTTACCCGCCCTGCCGCCAACATGCGTACCGCAGAAGAGAATTTGCGCACCGGCACTTTGTGCAGACGGGGATCCCCGTCGAATTCCGGTTAATAGGCGTAATCACGCACTACGGCAATGCTATAGGCATAAAGGTc                                                                                                       >  1:324302/1‑150 (MQ=255)                                           tCCACCGCCAGGCTTACCCGCCCTGCCGCCAACATGCGTACCGCAGAAGAAAAGTTGCGCACCGGCACTTTGTGCAGACGGGGATCCCCGTCGAATTCCGGTGAATAGGCGTAATCACGCACTACGGCAATGCTATAGGCATAAAGGTca                                                                                                      <  1:353884/150‑1 (MQ=255)                                           tCCACCGCCAGGCTTACCCGCCCTGCCGCCAACATGCGTACCGCAGAAGAAAAGTTGCGCACCGGCACTTTGTGCAGACGGGGATCCCCGTCGAATTCCGGTGAATAGGCGTAATCACGCACTACGGCAATGCTATAGGCATAAAGGTca                                                                                                      <  1:384851/150‑1 (MQ=255)                                             cACCGCCAGGCTTACCCGCCCTGCCGCCAACATGCGTACCGCAGAAGAAAAGTTGCGCACCGGCACTTTGTGCAGACGGGGATCCCCGTCGAATTCCGGTGAATAGGCGTAATCACGCACTACGGCAATGCTATAGGCATAAAGGTcaga                                                                                                    >  2:612812/1‑150 (MQ=255)                                                  cgaGGCGTACCCTCCCTGCCGCCAACATGCGTACCGCAGAAGAAAAGTTGCGCACCGGCACTTTGTGCAGACGGGGATCCCCGTCGAATTCCGGTGAATAGGCGTAATCACGCACTACGGCAATGCTATAGGCATAAAGGTCagacagac                                                                                               >  2:486396/3‑150 (MQ=255)                                                  ccAGGCTTACCCGCCCTGCCGCCAACATGCGTACCGCAGAAGAAAAGTTGCGCACCGGCACTTTGTGCAGACGGGGATCCCCGTCGAATTCCGGTGAATAGGc                                                                                                                                              <  1:337703/103‑1 (MQ=255)                                                  ccAGGCTTACCCGCCCTGCCGCCAACATGCGTACCGCAGAAGAAAAGTTGCGCACCGGCACTTTGTGCAGACGGGGATCCCCGTCGAATTCCGGTGAATAGGc                                                                                                                                              >  2:337703/1‑103 (MQ=255)                                                      gCTTACCCGCCCTGCCGCCAACATGCGTACCGCAGAAGAAAAGTTGCGCACCGGCACTTTGTGCAGACGGGGATCCCCGTCGAATTCCGGTGAATAGGCGTAATCACGCACTACGGCAATGCTATAGGCATAAAg                                                                                                          <  1:512844/135‑1 (MQ=255)                                                      gCTTACCCGCCCTGCCGCCAACATGCGTACCGCAGAAGAAAAGTTGCGCACCGGCACTTTGTGCAGACGGGGATCCCCGTCGAATTCCGGTGAATAGGCGTAATCACGCACTACGGCAATGCTATAGGCATAAAg                                                                                                          >  2:512844/1‑135 (MQ=255)                                                      gCTTACCCGCCCTGCCGCCAACATGCGAACCGCAGAAGAAAGGTTGCGCACCGGCACTTTGTGCAGATGGGGATCCCCGTCGAATTCGGGTGCATAGGCGTAATAATGCACTGCGGCAAAGCCATAGGCAGCAAGGTCAGACAGACGCtt                                                                                           >  2:248500/1‑150 (MQ=255)                                                             cGCCCTGCCGCCAACATGCGTACCGCAGAAGAAAAGTTGCGCACCGGCACTTTGTGCAGACGGGGATCCCCGTCGAATTCCGGTGAATAGGCGTAATCACGCACTACGGCAATGCtata                                                                                                                   <  1:504521/119‑1 (MQ=255)                                                             cGCCCTGCCGCCAACATGCGTACCGCAGAAGAAAAGTTGCGCACCGGCACTTTGTGCAGACGGGGATCCCCGTCGAATTCCGGTGAATAGGCGTAATCACGCACTACGGCAATGCtata                                                                                                                   >  2:504521/1‑119 (MQ=255)                                                                     cgccAACATGCGTACCGCAGAAGAAAAGTTGCGCACCGGCACTTTGTGCAGACGGGGCTCCACATCAAAGTCCGGTAAATCAGCGTAATCACGCACTACGGCAATGCTATAGGCATAAAGGTCAGACAGACGCTTGTAGCTAAACGCCTc                                                                            <  1:200749/150‑1 (MQ=255)                                                                                         aagaaAAGTTGCGCACCGGCACTTTGTGCAGACGGGGATCCCCGTCGAATTCCGGTGAATAGGCGTAATCACGCACTACGGCAATGCTATAGGCATAAAGGTCAGACAGACGCTTGTAGCTAAACGCCTCGCCCTTACGCTGCAGCAGGc                                                        <  1:612812/150‑1 (MQ=255)                                                                                          agaaAAGTTGCGCACCGGCACTTTGTGCAGACGGGGATCCCCGTCGAATTCCGGTGAATAGGCGTAATCACGCACTACGGCAATGCTATAGGCATAAAGGTCAGACAGACGCTTGTAGCTAAACGAATCGACCTTACGCTGCAGCAGGCg                                                       >  2:295873/1‑150 (MQ=255)                                                                                           gaaAAGTTGCGCACCGGCACTTTGTGCAGACGGGGATCCCCGTCGAATTCCGGTGAATAGGCGTAATCACGCACTACGGCAATGCTATAGGCATAAAGGTCAGACAGACGCTTGTAGCTaaa                                                                                  >  1:325506/1‑122 (MQ=255)                                                                                           gaaAAGTTGCGCACCGGCACTTTGTGCAGACGGGGATCCCCGTCGAATTCCGGTGAATAGGCGTAATCACGCACTACGGCAATGCTATAGGCATAAAGGTCAGACAGACGCTTGTAGCTaaa                                                                                  <  2:325506/122‑1 (MQ=255)                                                                                              cgactattcaccggaattcgacggggatccccgtctgcacaaagtgccggtgAATAGGCGTAATCACGCACTACGGCAATGCTATAGGCATAAAGGTCAGACAGACGCTTGTAGCTAAACGCCTCGCCCTTACGCTGCAGCAGGCGAATa                                                   <  1:67708‑M2/98‑1 (MQ=255)                                                                                                 ttGCGCACCGGCACTTTGTGCAGACGGGGATCCCCGTCGAATTCCGGTGAATAGGCGTAATCACGCACTACGGCAATGCTATAGGCATAAAGGTCAGACAGACGCTTGTAGCTAAACGCCTCGCCCTTACGCTGCAGCAGGCGAATACGa                                                <  1:486396/150‑1 (MQ=255)                                                                                                 ctattcaccggaattcgacggggatccccgtctgcacaaagtgccggtgAATAGGCGTAATCACGCACTACGGCAATGCTATAGGCATAAAGGTCAGACAGACGCTTGTAGCTAAACGCCTCGCCCTTACGCTGCAGCAGGCGAATACGa                                                >  1:441664‑M2/50‑150 (MQ=255)                                                                                                         cggaattcgacggggatccccgtctgcacaaagtgccggtgAATAGGCGTAATCACGCACTACGGCAATGCTATAGGCATAAAGGTCAGACAGACGCTTGTAGCTAAACGCCTCGCCCTTACGCTGCAGCAGGCGAATACGATTACTCAg                                        <  2:441664‑M2/109‑1 (MQ=255)                                                                                                                   ggCAGACGGGCAGCCCCGTCGAATTCCGGTGAATAGGCGTAATCACGCACTACGGCAATGCTATAGGCATAAAGGTCAGACAGACGCTTGTAGCTAAACGCCNCGCCCTTACNCTGCAGCANGCGAATACGATTACTCAGGTAGGCGCTg                              <  1:248500/149‑1 (MQ=255)                                                                                                                      cgACGGGGATCCCCGTCGAATTCCGGTGAATAGGCGTAATCACGCACTACGGCAATGCTATAGGCATAAAGGTCAGACAGACGCTTGTAGCTAAACGCCTCGCCCTTACGCTGCAGCAGGCGAATACGATTACTCAGGTAGGCGCTGgag                           >  1:312136/2‑150 (MQ=255)                                                                                                                                  ccGTCGAATTCCGGTGAATAGGCGTAATCACGCACTACGGCAATGCTATAGGCATAAAGGTCAGACAGACGCTTGTAGCTAAACGCCTCGCCCTTACGCTGCAGCAGGCGAATACGATTACTCAGGTAGGCGCTGGAGAATTGcc                    <  1:137662/145‑1 (MQ=255)                                                                                                                                  ccGTCGAATTCCGGTGAATAGGCGTAATCACGCACTACGGCAATGCTATAGGCATAAAGGTCAGACAGACGCTTGTAGCTAAACGCCTCGCCCTTACGCTGCAGCAGGCGAATACGATTACTCAGGTAGGCGCTGGAGAATTGcc                    >  2:137662/1‑145 (MQ=255)                                                                                                                                   cGTCGAATTCCGGTGAATAGGCGTAATCACGCACTACGGCAATGCTATAGGCATAAAGGTCAGACAGACGCTTGTAGCTAAACGCCTCGCCCTTACGCTGCAGCAGGCGAATACGATTACTCAGGTAGGCGCTGGAGAATTGCCCGatat              >  1:220720/1‑150 (MQ=255)                                                                                                                                              gttgAATAGGCGTAATCACGCACTACGGCAATGCTATAGGCATAAAGGTCAGACAGACGCTTGTAGCTAAACGCCTCGCCCTTACGCTGCAGCAGGCGAATACGATTACTCAGGTAGGCGCTGCAGAATTGCCCGATATTGGCGCGCGAg   <  1:295873‑M2/146‑1 (MQ=255)                                                                                                                                               gtgAATAGGCGTAATCACGCACTACGGCAATGCTATAGGCATAAAGGTCAGACAGACGCTTGTAGCTAAACGCCTCGCCCTTACGCTGCAGCAGGCGAATACGATTACTCAGGTAGGCGCTGGAGAATTGCCCGATATTGGCGCGCGAGt  >  1:439176‑M2/4‑150 (MQ=255)                                                                                                                                                  |                                                                                                                                                   TGCGGCTCACGCTGCAGGTTGTAGCGGGCCACGTACTCGTCTTCCACCGCCAGGCTTACCCGCCCTGCCGCCAACATGCGTACCGCAGAAGAAAAGTTGCGCACCGGCACTTTGTGCAGACGGGGATCCCCGTCGAATTCCGGTGAATAGGCGTAATCACGCACTACGGCAATGCTATAGGCATAAAGGTCAGACAGACGCTTGTAGCTAAACGCCTCGCCCTTACGCTGCAGCAGGCGAATACGATTACTCAGGTAGGCGCTGGAGAATTGCCCGATATTGGCGCGCGAGT  >  NC_002947/5647079‑5647370

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.