New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 5803716 | 33 (1.430) | 4 (0.180) | 4/234 | NT | 11.6% | coding (138/1017 nt) | PP_5081 | type IV pili biogenesis protein |
? | NC_002947 | = 5803732 | 30 (1.390) | coding (122/1017 nt) | PP_5081 | type IV pili biogenesis protein |
GCTCTCCCCGGCGGCCAGATACCAGTGCGCCTCTTGCAACCGCTGTTCGGCAATCACCACTAAAGCCTTCAGCCGCTCCAGTTCGGCCAACTGCGCTGCATTGGCTGCCTGCAGCTGGTTCAACTCGACATGCCTGGCATCCTCCCGCGCCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5803563‑5803716 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcctgcCTGCCCTGTTACAGCAGCAGGCGCGGGAGGATGCCAGGCATGTCGAGTTGAACCAGCTGCAGGCAGCCAATGCAGCGCAGTTGGCCGAACTGGAGCGGCTGAAGGCTTTAGTGGTGATTGCCGAACAGCGGTTGCAAGAGGCGCACTGG < NC_002947/5803732‑5803584 GCTCTCCCCGGCGGCCAGATACCAGTGCGCCTCTTGCAACCGCTGTTCGGCAATCACCACTAAAGCCTTCAGCCGCTCCAGTTCGGCCAACTGCGCTGCATTGGCTGCCTGCAGCTGGTTCAACTCGACATGCCTGGCATCCTCCCGCGC > 1:123540/1‑150 TCTCCCCGGCGGCCAGATACCAGTGCGCCTCTTGCAACCGCTGTTCGGCAATCACCACTAAAGCCTTCAGCCGCTCCAGTTCGGCCAACTGCGCTGCATTGGCTGCCTGCAGCTGGTTCAACTCGACATTCCTGGCATCCTCCCGCGCCT > 1:182997/1‑150 TCCCCGGCGGCCAGATACCAGTGCGCCTCTTGCAACCGCTGTTCGGCAATCACCACTAAAGCCTTCAGCCGCTCCAGTTCGGCCAACTGCGCTGCATTGGCTGCCTGCAGCTGGTTCAACTCGACATGCCTGGCATCCTCCCGCGCCTGC < 2:63959/150‑1 TGTTCGGCAATCACCACTAAAGCCTTCAGCCGCTCCAGTTCGGCCAACTGCGCTGCATTGGCTGCCTGCAGCTGGTTCAACTCGACATGCCTGGCATCCTCCCGCGCCTGCCTGCCCTGTTACAGCAGCAGGCGCGGGA < 1:452257/139‑1 TGTTCGGCAATCACCACTAAAGCCTTCAGCCGCTCCAGTTCGGCCAACTGCGCTGCATTGGCTGCCTGCAGCTGGTTCAACTCGACATGCCTGGCATCCTCCCGCGCCTGCCTGCCCTGTTACAGCAGCAGGCGCGGGA > 2:452257/1‑139 ACCACTAAAGCCTTCAGCCGCTCCAGTTCGGCCAACTGCGCTGCATTGGCTGCCTGCAGCTGGTTCAACTCGACATGCCTGGCATCCTCCCGCGCCTGCCTGCCCTGTTACAGCAGCAGGCGCGG < 1:247847/125‑1 ACCACTAAAGCCTTCAGCCGCTCCAGTTCGGCCAACTGCGCTGCATTGGCTGCCTGCAGCTGGTTCAACTCGACATGCCTGGCATCCTCCCGCGCCTGCCTGCCCTGTTACAGCAGCAGGCGCGG > 2:247847/1‑125 GCGCCTGCCTGCCCTGTTACAGCAGCAGGCGCGGGAGGATGCCAGGCATGTCGAGTTGAACCAGCTGCAGGCAGCCAATGCAGCGCAGTTGGCCGAACTGGAGCGGCTGAAGGCTTTAGTGGTGATTGCCGAACAGCGGTTGCAAGAGGC < 2:353311/150‑1 CCTGCCCTGTTACAGCAGCAGGCGCGGGAGGATGCCAGGCATGTCGAGTTGAACCAGCTGCAGGCAGCCAATGCAGCGCAGTTGGCCGAACTGGAGCGGCTGAAGGCTTTAGTGGTGATTGCCGAACAGCGTTTGCAAGAGGCGCACTGG > 2:334552/1‑150 GCTCTCCCCGGCGGCCAGATACCAGTGCGCCTCTTGCAACCGCTGTTCGGCAATCACCACTAAAGCCTTCAGCCGCTCCAGTTCGGCCAACTGCGCTGCATTGGCTGCCTGCAGCTGGTTCAACTCGACATGCCTGGCATCCTCCCGCGCCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5803563‑5803716 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcctgcCTGCCCTGTTACAGCAGCAGGCGCGGGAGGATGCCAGGCATGTCGAGTTGAACCAGCTGCAGGCAGCCAATGCAGCGCAGTTGGCCGAACTGGAGCGGCTGAAGGCTTTAGTGGTGATTGCCGAACAGCGGTTGCAAGAGGCGCACTGG < NC_002947/5803732‑5803584 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |