New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 5803716 | 33 (1.430) | 4 (0.180) | 4/234 | NT | 11.6% | coding (138/1017 nt) | PP_5081 | type IV pili biogenesis protein |
? | NC_002947 | = 5803732 | 30 (1.390) | coding (122/1017 nt) | PP_5081 | type IV pili biogenesis protein |
CCAGTGCGCCTCTTGCAACCGCTGTTCGGCAATCACCACTAAAGCCTTCAGCCGCTCCAGTTCGGCCAACTGCGCTGCATTGGCTGCCTGCAGCTGGTTCAACTCGACATGCCTGGCATCCTCCCGCGCCTGCTGCTGTAACAGGGCAGGCAGGCGCATCGCGCAGCCCAGGCTGAACAACACAACAGCGATCAGCGCTGGCGCCAACCATCGGAAGCGGCCTGAGCCCTCGACCACCGCCAGCCAAGCGAGCATCTGCGCTGGACTCACGACCAGAACGCCGCAACACGAG > NC_002947/5803584‑5803875 | ccAGTGCGCCTCTTGCAAACGCTGTTCGGCAATCACCACTAAAGCCTTCAGCCGCTCCAGTTCGGCCAACTGCGCTGCATTGGCTGCCTGCAGCTGGTTCAACTCGACATGCCTGGCATCCTCCCGCGCCTGCTGCTGTAACAGGGCAGg > 2:334552‑M2/1‑149 (MQ=255) gcCTCTTGCAACCGCTGTTCGGCAATCACCACTAAAGCCTTCAGCCGCTCCAGTTCGGCCAACTGCGCTGCATTGGCTGCCTGCAGCTGGTTCAACTCGACATGCCTGGCATCCTCCCGCGCCTGCTGCTGTAACAGGGCAGgcaggcgc < 2:353311‑M2/150‑9 (MQ=255) tctTGCAACCGCTGTTCGGCAATCACCACTAAAGCCTTCAGCCGCTCCAGTTCGGCCAACTGCGCTGCATTGGCTGCCTGCAGCTGGTTCAACTCGACATGCCTGGCATCCTCCCGCGCCTGCTGCTGTAACAGGGCAGGCAGGCGCATc < 2:123540/150‑1 (MQ=255) ttGCAACCGCTGTTCGGCAATCACCACTACAGCCTTCAGCCGCTCCAGTTCGGCCAACTGCGCTGCATTGGCTGCCTGCAGCTGGTTCAACTCGACATGCCTGGCATCCTCCCGCGCCTGCTGCTGTAACAGGGCAGGCAGGCGCATcgc > 2:216626/1‑150 (MQ=255) aaCCGCTGTTCGGCAATCACCACTAAAGCCTTCAGCCGCTCCAGTTCGGCCAACTGCGCTGCATTGGCTGCCTGCAGCTGGTTCAACTCGACATGCCTGGCATCCTCCCGCGCCTGCTGCTGTAACAGGGCAGGCAGGCGCATCGCGCAg > 2:371129/1‑150 (MQ=255) gCTGTTCGGCAATCACCACTAAAGCCTTCAGCCGCTCCAGTTCGGCCAACTGCGCTGCATTGGCTGCCTGCAGCTGGTTCAACTCGACATGCCTGGCATCCTCCCGCGCCTGCTGCTGTAACAGGGCAGGCAGGCGCATCGCGCAGCCCa < 1:62197/150‑1 (MQ=255) ttCGGCAATCACCACTAAAGCCTTCAGCCGCTCCAGTTCGGCCAACTGCGCTGCATTGGCTGCCTGCAGCTGGTTCAACTCGACATGCCTGGCATCCTCCCGCGCCTGCTGCTGTAACAGGGCAGGCAGGCGCATCGCGCAGCCCAGGCt > 1:400993/1‑150 (MQ=255) ttCGGCAATCACCACTAAAGCCTTCAGCCGCTCCAGTTCGGCCAACTGCGCTGCATTGGCTGCCTGCAGCTGGTTCAACTCGACATGCCTGGCATCCTCCCGCGCCTGCTGCTGTAACAGGGCAGGCAGGCGCATCGCGCAGCCCAGGCt > 1:460159/1‑150 (MQ=255) aaTCACCACTAAAGCCTTCAGCCGCTCCAGTTCGGCCAACTGCGCTGCATTGGCTGCCTGCAGCTGGTTCAACTCGACATGCCTGGCATCCTCCCGCGCCTGCTGCTGTAACAGGGCAGGCAGGCGCATCGCGCAGCCCAGGCTGaacaa < 1:377765/150‑1 (MQ=255) ccacTAAAGCCTTCAGCCGCTCCAGTTCGGCCAACTGCGCTGCATTGGCTGCCTGCAGCTGGTTCAACTCGACATGCCTGGCATCCTCCCGCGCCTGCTGCTGTAACAGGGCAGGCAGGCGCATCGCGCAGCCCAGGCTGAacaacacaa > 1:564728/1‑150 (MQ=255) cacTAAAGCCTTCAGCCGCTCCAGTTCGGCCAACTGCGCTGCATTGGCTGCCTGCAGCTGGTTCAACTCGACATGCCTGGCATCCTCCCGCGCCTGCTGCTGTAACAGGGCAGGCAGGCGCATCGCGCAGCCCAGGCTGAacaacacaac > 2:97444/1‑150 (MQ=255) acTAAAGCCTTCAGCCGCTCCAGTTCGGCCAACTGCGCTGCATTGGCTGCCTGCAGCTGGTTCAACTCGACATGCCTGGCATCCTCCCGCGCCTGCTGCTGTAACAGGGCAGGCAGGCGCATCGCGCAGCCCAGGCTGAAcaacacaaca < 1:353311/150‑1 (MQ=255) acTAAAGCCTTCAGCCGCTCCAGTTCGGCCAACTGCGCTGCATTGGCTGCCTGCAGCTGGTTCAACTCGACATGCCTGGCATCCTCCCGCGCCTGCTGCTGTAACAGGGCAGGCAGGCGCATCGCGCAGCCCAGGCTGAAcaacacaaca < 2:460159/150‑1 (MQ=255) acTAAAGCCTTCAGCCGCTCCAGTTCGGCCAACTGCGCTGCATTGGCTGCCTGCAGCTGGTTCAACTCGACATGCCTGGCATCCTCCCGCGCCTGCTGCTGTAACAGGGCAGGCAGGCGCATCGCGCAGCCCAGGCTGAAcaacacaaca > 1:179183/1‑150 (MQ=255) tAAAGCCTTCAGCCGCTCCAGTTCGGCCAACTGCGCTGCATTGGCTGCCTGCAGCTGGTTCAACTCGACATGCCTGGCATCCTCCCGCGCCTGCTGCTGTAACAGGGCAGGCAGGCGCATCGCGCAGCCCAGGCTGAACAACACAACAGc > 1:39639/1‑150 (MQ=255) aaGCCTTCAGCCGCTCCAGTTCGGCCAACTGCGCTGCATTGGCTGCCTGCAGCTGGTTCAACTCGACATGCCTGGCATCCTCCCGCGCCTGCTGCTGTAACAGGGCAGGCAGGCGCATCGCGCAGCCCAGGCTGAACAACACAACAGCGa > 2:27666/1‑150 (MQ=255) ccTTCAGCCGCTCCAGTTCGGCCAACTGCGCTGCATTGGCTGCCTGCAGCTGGTTCAACTCGACATGCCTGGCATCCTCCCGCGCCTGCTGCTGTAACAGGGCAGGCAGGCGCATCGCGCAGCCCAGGCTGAACAACACAACAGCGATCa < 1:216626/150‑1 (MQ=255) ccGCTCCAGTTCGGCCAACTGCGCTGCATTGGCTGCCTGCAGCTGGTTCAACTCGACATGCCTGGCATCCTCCCGCGCCTGCTGCTGTAACAGGGCAGGCAGGCGCATCGCGCAGCCCAGGCTGAACAACACAACAGCGATCAGCGCTgg < 2:508431/150‑1 (MQ=255) gtccGGCCAACTGCGCTGCATTGGCTGCCTGCAGCTGGTTCAACTCGACATGCCTGGCATCCTCCCGCGCCTGCTGCTGTAACAGGGCAGGCAGGCGCATCGCGCAGCCCAGGCTGAACAACACAACAGCGa > 1:23193/4‑132 (MQ=255) gtccGGCCAACTGCGCTGCATTGGCTGCCTGCAGCTGGTTCAACTCGACATGCCTGGCATCCTCCCGCGCCTGCTGCTGTAACAGGGCAGGCAGGCGCATCGCGCAGCCCAGGCTGAACAACACAACAGCGa < 2:23193/129‑1 (MQ=255) cGGCCAACTGCGCTGCATTGGCTGCCTGCAGCTGGTTCAACTCGACATGCCTGGCATCCTCCCGCGCCTGCTGCTGTAACAGGGCAGGCAGGCGCATCGCGCAGCCCAGGCTGAACAACACAACAGCGATCAGCGCTGGCGCCAACCATc < 1:465566/150‑1 (MQ=255) ttGGCTGCCTGCAGCTGGTTAAACTCGACATGCCTGGCATCCTCCCGGGCCTGCTGCTGTAACAGGGCAGGCAGGCGCATCGCGCAGCCCAGGCTGAACAACACAACAGCGATCAGCGCTGGCGCCAACCATCGGAAGCGGCCTGAGccc > 2:441860/1‑150 (MQ=255) ggCTGCCTGCAGCTGGTTCAACTCGACATGCCTGGCATCCTCCCGCGCCTGCTGCTGTAACAGGGCAGGCAGGCGCATCGCGCAGCCCAGGCTGAACAACACAACAGCGATCAGCGCTGGCGCCAACCATCGGAAGCGGCCTGAGCCCTc < 2:541285/150‑1 (MQ=255) cTGGTTCAACTCGACATGCCTGGCATCCTCCCGCGCCTGCTGCTGTAACAGGGCAGGCAGGCGCATCGCGCAGCCCAGGCTGAACAACACAACAGCGATCAGCGCTGGCGCCAACCATCGGAAGCGGCCTGAGCCCTCGACCACCgccag < 1:97444/150‑1 (MQ=255) cAACTCGACATGCCTGGCATCCTCCCGCGCCTGCTGCTGTAACAGGGCAGGCAGGCGCATCGCGCAGCCCAGGCTGAACAACACAACAGCGATCAGCGCTGGCGCCAACCATCGGAAGCGGCCTGAGCCCTCGACCACCGCCAGCCAAGc > 1:441194/1‑150 (MQ=255) taCATGCCTGGCATACCACCGCGCCTCCTGATGTCACGGGGTAGCGAGCCGCATCGCGGAGCCGAGGCTGAACAACACAACAGCGATCACCGCTGGCGCCCAACCTCGGACGCCGCTTGCACCCTTAACCACCGCTACCCAAGCGAGCAt < 2:195035/149‑1 (MQ=255) aTGCCTGGCATCCTCCCGCGCCTGCTGCTGTAACAGGGCAGGCAGGCGCATCGCGCAGCCCAGGCTGAACAACACAACAGCGATCAGCGCTGGCGCCAACCATCGGAAGCGGCCTGAGCCCTCGACCACCGCCAGCCAAGCGAGCATCTg > 2:247363/1‑150 (MQ=255) tGCCTGGCATCCTCCCGCGCCTGCTGCTGTAACAGGGCAGGCAGGCGCATCGCGCAGCCCAGGCTGAACAACACAACAGCGATCAGCGCTGGCGCCAACCATCGGAAGCGGCCTGAGCCCTCGACCACCGCCAGCCAAGCGAGCATCTgc > 1:405629/1‑150 (MQ=255) gCCTGGCATCCTCCCGCGCCTGCTGCTGTAACAGGGCAGGCAGGCGCATCGCGCAGCCCAGGCTGAACAACACAACAGCGATCAGCGCTGGCGCCAACCATCGGAAGCGGCCTGAGCCCTCGACCACCGCCAGCCAAGCGAGCATCTgcg < 1:371129/150‑1 (MQ=255) tccCGCGCCTGCTGCTGTAACAGGGCAGgcaggcgcgggaggatgccaggcatgtcgagttgaaccagctgcaggcagccaatgcagcgcagttggccgaactggagcggctgaaggctttagtggtgattgccgaaca > 2:452257‑M2/1‑28 (MQ=255) tccCGCGCCTGCTGCTGTAACAGGGCAGgcaggcgcgggaggatgccaggcatgtcgagttgaaccagctgcaggcagccaatgcagcgcagttggccgaactggagcggctgaaggctttagtggtgattgccgaaca < 1:452257‑M2/139‑112 (MQ=255) cccGCGCCTGCTGCTGTAACAGGGCAGGCAGGCGCATCGCGCAGCCCAGGCTGAACAACACAACAGCGATCAGCGCTGGCGCCAACCATCGGAAGCGGCCTGAGCCCTCGACCACCGCCAGCCAAGCGAGCCTCTGCTGTGTACTCACGa < 2:182997/150‑1 (MQ=255) ccGCGCCTGCTGCTGTAACAGGGCAGgcaggcgcgggaggatgccaggcatgtcgagttgaaccagctgcaggcagccaatgcagcgcagttggccgaactggagcggctgaaggctttagtggt < 1:247847‑M2/125‑100 (MQ=255) ccGCGCCTGCTGCTGTAACAGGGCAGgcaggcgcgggaggatgccaggcatgtcgagttgaaccagctgcaggcagccaatgcagcgcagttggccgaactggagcggctgaaggctttagtggt > 2:247847‑M2/1‑26 (MQ=255) ccGCGCCTGCTGCTGTAACAGGGCAGGCAGGCGCATCGCGCAGCCCAGGCTGAACAACACAACAGCGATCAGCGCTGGCGCCAACCATCGGAAGCGGCCTGAGCCCTCGACCACCGCCAGCCAAGCGAGCATCTGTGCTGGACTCACGAc > 2:608256/1‑150 (MQ=255) tgctgTAACAGGGCAGGCAGGCGCATCGCGCAGCCCAGGCTGAACAACACAACAGCGATCAGCGCTGGCGCCAACCATCGGAAGCGGCCTGAGCCCTCGACCACCGCCAGCCAAGCGAGCATCTGCGCTGGACTCACGACCAGAAcgccg > 2:531555/1‑150 (MQ=255) aaCAGGGCAGGCAGGCGCATCGCGCAGCCCAGGCTGAACAACACAACAGCGATCAGCGCTGGCGCCAACCATCGGAAGCGGCCTGAGCCCTCGACCACCGCCAGCCAAGCGAGCATCTGCGCTGGACTCACGACCAGAACGCCGCAacac > 2:413730/1‑150 (MQ=255) aGGGCAGGCAGGCGCATCGCGCAGCCCAGGCTGAACAACACAACAGCGATCAGCGCTGGCGCCAACCATCGGAAGCGGCCTGAGCCCCCGACCACCGCCAGCCAAGCGAGCATCTGCGCTGGACTCACGACCAGAACGCCGCAACACGAg < 2:400993/150‑1 (MQ=255) | CCAGTGCGCCTCTTGCAACCGCTGTTCGGCAATCACCACTAAAGCCTTCAGCCGCTCCAGTTCGGCCAACTGCGCTGCATTGGCTGCCTGCAGCTGGTTCAACTCGACATGCCTGGCATCCTCCCGCGCCTGCTGCTGTAACAGGGCAGGCAGGCGCATCGCGCAGCCCAGGCTGAACAACACAACAGCGATCAGCGCTGGCGCCAACCATCGGAAGCGGCCTGAGCCCTCGACCACCGCCAGCCAAGCGAGCATCTGCGCTGGACTCACGACCAGAACGCCGCAACACGAG > NC_002947/5803584‑5803875 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |