New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	25741 =	38 (1.640)	4 (0.190)	4/230	NT	11.0%	intergenic (+171/‑140)	PP_0020/PP_0021	hypothetical protein/hypothetical protein
	?	NC_002947	25779 =	30 (1.410)					intergenic (+209/‑102)	PP_0020/PP_0021	hypothetical protein/hypothetical protein

GTTTGAGGCCCGCCCAAAGCATGCCTGATCGACCTGGGCGGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/25784‑25741 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgggcgggccTCAAACCAGTGGGTGACCACCAAAAGGGTCAGTTAGGCCTACTGCTGCCTATCCTCGCTCGTTACCATCCAGAGACCCTCTATTGATACGGTTTCAGCAAAGATGGATGTCTATAAGGTCCGCATCGAAGACACAGAAAGCAAGATCAT  >  NC_002947/25779‑25927                                                                                                                                                                                                   GTTTGAGGCCCGCCCAAAGCATGCCTGATCGACCTGGGCGGGCCTCAAACCAGTGGGTGACCACCAAAAGGGTCAGTTAGGCCTACTGCTGCCTATCCTCGCTCGTTACCATCCAGAGACCCTCTATTGATACGGTTTCAGCAAAGATGG                                             >  2:193137/1‑150        GCCCGCCCAAAGCATGCCTGATCGACCTGGGCGGGCCTCAAACCAGTGGGTGACCACCAAAAGGGTCAGTTAGGCCTACTGCTGCCTATCCTCGCTC                                                                                           <  1:592885/97‑1        GCCCGCCCAAAGCATGCCTGATCGACCTGGGCGGGCCTCAAACCAGTGGGTGACCACCAAAAGGGTCAGTTAGGCCTACTGCTGCCTATCCTCGCTC                                                                                           >  2:592885/1‑97                          TGATCGACCTGGGCGGGCCTCAAACCAGTGGGTGACCACCAAAAGGGTCAGTTAGGCCTACTGCTGCCTATCCTCGCTCGTTACCATCCAGAGACCCTCTATTGATACGGTTTCAGCAAAGATGGATGTCTATAAGGTCCGCATCGAAGA                    <  1:193137/150‑1                                            CTCAAACCAGTGGGTGACCACCAAAAGGGTCAGTTAGGCCTACTGCTGCCTATCCTCGCTCGTTACCATCCAGAGACCCTCTATTGATACGGTTTCAGCAAAGATGGATGTCTATAAGGTCCGCATCGAAGACACAGAAAGCAAGATCAT  >  2:179536/1‑150                                                                                                                                                                                                   GTTTGAGGCCCGCCCAAAGCATGCCTGATCGACCTGGGCGGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/25784‑25741 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgggcgggccTCAAACCAGTGGGTGACCACCAAAAGGGTCAGTTAGGCCTACTGCTGCCTATCCTCGCTCGTTACCATCCAGAGACCCTCTATTGATACGGTTTCAGCAAAGATGGATGTCTATAAGGTCCGCATCGAAGACACAGAAAGCAAGATCAT  >  NC_002947/25779‑25927

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.