| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1978556 = | 31 (1.340) | 3 (0.140) | 3/238 | NT | 8.8% | coding (2177/2241 nt) | PP_1770 | 3‑phosphoshikimate 1‑carboxyvinyltransferase |
| ? | NC_002947 | 1978592 = | 33 (1.500) | coding (2213/2241 nt) | PP_1770 | 3‑phosphoshikimate 1‑carboxyvinyltransferase | |||||
CCAGCCCAGCTCGCGGGCAATCAGCCCGGCGACCGTGCCCTTGCCCGAGCCGCTTGGTCCGTCGATGGTGATAACCGGTGCCATTGAATTCACGACTTGCCCTCTTCTGCCACGCGAATCCCC‑ACTTC‑‑GGCGCACAGCGCCAGGAAGTTGGGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1978709‑1978556‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggggaTTCGCGTGGCAGAAGAGGGCAAGTCGTGAATTCAATGGCACCGGTTATCACCATCGACGGACCAAGCGGCTCGGGCAAGGGCACGGTCGCCGGGCTGATTGCCCGCGAGCTGGGCTGGAAGCTGCTGGACTCCGGCGCGCT > NC_002947/1978592‑1978732 CCAGCCCAGCTCGCGGGCAATCAGCCCGGCGACCGTGCCCTTGCCCGAGCCGCTTGGTCCGTCGATGGTGATAACCGGTGCCATTGAATTCACGACTTGCCCTCTTCTGCCACGCGAATCCCC‑ACTTC‑‑GGCGCACAGCGCCAGGAAGTTG < 1:215093/150‑1CCAGCCCAGCTCGCGGGCAATCAGCCCGGCGACCGTGCCCTTGCCCGAGCCGCTTGGTCCGTCGATGGTGATAACCGGTGCCATTGAATTCACGACTTGCCCTCTTCTGCCACGCGAATCCCC‑ACTTC‑‑GGCGCACAGCGCCAGGAAGTTG < 2:371415/150‑1 CAGCCCAGCTCGCGGGCAATCAGCCCGGCGACCGTGCCCTTGCCCGAGCCGCTTGGTCCGTCGATGGTGATAACCGGTGCCATTGAATTCACGACTTGCCCTCTTCTGCCACGCGAATCCCC‑ACTTC‑‑GGCGCACAGCGCCAGGAAGTTGG < 2:226586/150‑1 AGCCCGGCGACCGTGCCCTTGCCCGAGCCGCTTGGTCCGTCGATGGTGATAACCGGTGCCATTGAATTCACGACTTGCCCTCTTCTGCCACGCGAATCCCCAACTTCCTGGCGCTGTGCGCC‑‑GAAG‑TGGGGATTCGCGTGGCAGAAGAGG < 1:434796/150‑1 GAATCCCC‑ACTTC‑‑GGCGCACAGCGCCAGGAAGTTGGGGATTCGCGTGGCAGAAGAGGGCAAGTCGTGAATTCTATGGCACCGGTTATCACCATCGACGGACCAAGCGGCTC > 1:536326/1‑111 GAATCCCC‑ACTTC‑‑GGCGCACAGCGCCAGGAAGTTGGGGATTCGCGTGGCAGAAGAGGGCAAGTCGTGAATTCAATGGCACCGGTTATCACCATCGACGGACCAAGCGGCTC < 2:536326/111‑1 aaggGGGGATTCGCGTGGCAGAAGAGGGCAAGTCGTGAATTCAATGGCACCGGTTATCACCATCGACGGACCAAGCGGCTCGGGCAAGGGCACGGTCGCCGGGCCGATTGCCCGCGAGCTGGGCTGGAAGCTGCTGGACTCCGGCGCGCT < 1:24189/146‑1 CCAGCCCAGCTCGCGGGCAATCAGCCCGGCGACCGTGCCCTTGCCCGAGCCGCTTGGTCCGTCGATGGTGATAACCGGTGCCATTGAATTCACGACTTGCCCTCTTCTGCCACGCGAATCCCC‑ACTTC‑‑GGCGCACAGCGCCAGGAAGTTGGGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1978709‑1978556‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggggaTTCGCGTGGCAGAAGAGGGCAAGTCGTGAATTCAATGGCACCGGTTATCACCATCGACGGACCAAGCGGCTCGGGCAAGGGCACGGTCGCCGGGCTGATTGCCCGCGAGCTGGGCTGGAAGCTGCTGGACTCCGGCGCGCT > NC_002947/1978592‑1978732 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |