New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 1978556 = | 31 (1.340) | 3 (0.140) | 3/238 | NT | 8.8% | coding (2177/2241 nt) | PP_1770 | 3‑phosphoshikimate 1‑carboxyvinyltransferase |
? | NC_002947 | 1978592 = | 33 (1.500) | coding (2213/2241 nt) | PP_1770 | 3‑phosphoshikimate 1‑carboxyvinyltransferase |
AGTGCATGGGCATGGTGACCACCGCATCGCCATGGCCTTTAGCGTGGCTTCGCTGCGCGCCAGTGCGCCGATTCGCATTCATGACTGCGCCAACGTCGCCACCTCGTTCCCCAACTTCCTGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTCGCGTGGCAGAAGAGGGCAAGTCGTGAATTCAATGGCACCGGTTATCACCATCGACGGACCAAGCGGCTCGGGCAAGGGCACGGTCGCCGGGCTGATTGCCCGCGAGCTGGGCTGGAAGCTGCTGGACTCCGGCGCGCTGT > NC_002947/1978449‑1978734 | aGTGCATGGGCATGGTGACCACCGCATCGCCATGGCCTTTAGCGTGGCTTCGCTGCGCGCCAGTGCGCCGATTCGCATTCATGACTGCGCCAACGTCGCCACCTCGTTCCCCAACTTCCTGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTCGCGt < 1:96541/150‑1 (MQ=255) aGTGCATGGGCATGGTGACCACCGCATCGCCATGGCCTTTAGCGTGGCTTCGCTGCGCGCCAGTGCGCCGATTCGCATTCATGACTGCGCCAACGTCGCCACCTCGTTCCCCAACTTCCTGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTCGCGt < 2:424901/150‑1 (MQ=255) aGTGCATGGGCATGGTGACCACCGCATCGCCATGGCCTTTAGCGTGGCTTCGCTGCGCGCCAGTGCGCCGATTCGCATTCATGACTGCGCCAACGTCGCCACCTCGTTCCCCAACTTCCTGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTCGCGt < 1:265131/150‑1 (MQ=255) ggTGACCACCGCATCGCCATGGCCTTTAGCGTGGCTTCGCTGCGCGCCAGTGCGCCGATTCGCATTCATGACTGCGCCAACGTCGCCACCTCGTTCCCCAACTTCCTGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTCGTGTGGCAGAAGAGGGc > 2:428125/1‑150 (MQ=255) ggTGACCACCGCATCGCCATGGCCTTTAGCGTGGCTTCGCTGCGCGCCAGTGCGCCGATTCGCATTCATGACTGCGCCAACGTCGCCACCTCGTTCCCCAACTTCCTGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTCGCGTGGCAGAAGAGGGc < 1:66808/150‑1 (MQ=255) agcccggcgaccgtgcccttgcccgagccgcttggtccgtcgatggtgataaccggtgccattgaattcacgacttgccctcttctgccacgcgaatccccaacttcctggcgctgtgcgccgaagtggggaTTCGCGTGGCAGAAGAgg < 1:434796‑M2/18‑1 (MQ=255) caccGCATCGCCATGGCCTTTAGCGTGGCTTCGCTGCGCGCCAGTGCGCCGATTCGCATTCATGACTGCGCCAACGTCGCCACCTCGTTCCCCAACTTCCTGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTCGCGTGGCAGAAGAGGGCAAGTCg > 1:5575/1‑150 (MQ=255) accGCATCGCCATGGCCTTTAGCGTGGCTTCGCTGCGCGCCAGTGCGCCGATTCGCATTCATGACTGCGCCAACGTCGCCACCTCGTTCCCCAACTTCCTGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTCGCGTGGCAGAAGAGGGCAAGTCGt > 1:361536/1‑150 (MQ=255) ccGCATCGCCATGGCCTTTAGCGTGGCTTCGCTGCGCGCCAGTGCGCCGATTCGCATTCATGACTGCGCCAACGTCGCCACCTCGTTCCCCAACTTCCTGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTCGCGTGGCAGAAGAGGGCAAGTCGTg < 1:87068/150‑1 (MQ=255) gCATCGCCATGGCCTTTAGCGTGGCTTCGCTGCGCGCCAGTGCGCCGATTCGCATTCATGACTGCGCCAACGTCGCCACCTCGTTCCCCAACTTCCTGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTCGCGTGGCAGAAGAGGGCAAGTCGTGaa < 1:359442/150‑1 (MQ=255) gCCATGGCCTTTAGCGTGGCTTCGCTGCGCGCCAGTGCGCCGATTCGCATTCATGACTGCGCCAACGTCGCCACCTCGTTCCCCAACTTCCTGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTCGCGTGGCAGAAGAGGGCAAGTCGTGAATTCaa < 2:227005/150‑1 (MQ=255) gagccgcttggtccgtcgatggtgataaccggtgccattgaattcacgacttgccctcttctgccacgcgaaTCCCCAACTTCCTGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTc < 2:536326‑M1/39‑1 (MQ=255) gagccgcttggtccgtcgatggtgataaccggtgccatagaattcacgacttgccctcttctgccacgcgaaTCCCCAACTTCCTGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTc > 1:536326‑M1/73‑111 (MQ=255) cTTTAGCGTGGCTTCGCTGCGCGCCAGTGCGCCGATTCGCATTCATGACTGCGCCAACGTCGCCACCTCGTTCCCCAACTTCCTGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTCGCGTGGCAGAAGAGGGCAAGTCGTGAATTCAATGGCACCg > 2:221843/1‑150 (MQ=255) cTTCGCTGCGCGCCAGTGCGCCGATTCGCATTCATGACTGCGCCAACGTCGCCACCTCGTTCCCCAACTTCCTGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTCGCGTGGCAGAAGAGGGCAAGTCGTGAATTCAATGGCACCGGTTATCACCAt < 1:462506/150‑1 (MQ=255) ttCGCTGCGCGCCAGTGCGCCGATTCGCATTCATGACTGCGCCAACGTCGCCACCTCGTTCCCCAACTTCCTGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTCGCGTGGCAGAAGAGGGCAAGTCGTGAATTCAATGGCACCGGTTATCACCATc > 2:25008/1‑150 (MQ=255) cGCTGCGCGCCAGTGCGCCGATTCGCATTCATGACTGCGCCAACGTCGCCACCTCGTTCCCCAACTTCCTGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTCGCGTGGCAGAAGAGGGCAAGTCGTGAATTCAATGGCACCGGTTATCACCATCGa < 1:371793/150‑1 (MQ=255) cAGTGCGCCGATTCGCATTCATGACTGCGCCAACGTCGCCACCTCGTTCCCCAACTTCCTGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTCGCGTGGCAGAAGAGGGCAAGTCGTGAATTCAATGGCACCGGTTATCACCATCGACGGACCAAGc < 2:5575/150‑1 (MQ=255) gcCGATTCGCATTCATGACTGCGCCAACGTCGCCACCTCGTTCCCCAACTTCCTGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTCGCGTGGCAGAAGAGGGCAAGTCGTGAAtt > 2:462370/1‑109 (MQ=255) gcCGATTCGCATTCATGACTGCGCCAACGTCGCCACCTCGTTCCCCAACTTCCTGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTCGCGTGGCAGAAGAGGGCAAGTCGTGAAtt < 1:462370/109‑1 (MQ=255) cGCATTCATGACTGCGCCAACGTCGCCACCTCGTTCCCCAACTTCCTGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTCGCGTGGCAGAAGAGGGCAAGTCGTGAATTCAATGGCACCGGTTATCACCATCGACGGACCAAGCGGCTCGGGCAAgg < 2:361536/150‑1 (MQ=255) gCATTCATGACTGCGCCAACGTCGCCACCTCGTTCCCCAACTTCCTGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTCGCGTGGCAGAAGAGGGCAAGTCGTGAATTCAATGGCACCGGTTATCACCATCGACGGACCAAGCGGCTCGGGCAAggg > 1:73787/1‑150 (MQ=255) gCATTCATGACTGCGCCAACGTCGCCACCTCGTTCCCCAACTTCCTGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTCGCGTGGCAGAAGAGGGCAAGTCGTGAATTCAATGGCACCGGTTATCACCATCGACGGACCAAGCGGCTCGGGCAAggg < 1:221843/150‑1 (MQ=255) cATTCATGACTGCGCCAACGTCGCCACCTCGTTCCCCAACTTCCTGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTCGCGTGGCAGAAGAGGGCAAGTCGTGAATTCAATGGCACCGGTTATCACCATCGACGGACCAAGCGGCTCGGGCAAGGGc > 1:190652/1‑150 (MQ=255) cATTCATGACTGCGCCAACGTCGCCACCTCGTTCCCCAACTTCCTGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTCGCGTGGCAGAAGAGGGCAAGTCGTGAATTCAATGGCACCGGTTATCACCATCGACGGACCAAGCGGCTCGGGCAAGGGc > 2:589623/1‑150 (MQ=255) cgcCAACGTCGCCACCTCGTTCCCCAACTTCCTGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTCGCGTGGCAGAAGAGGGCAAGTCGTGAATTCAATGGCACCg > 2:75481/1‑99 (MQ=255) cgcCAACGTCGCCACCTCGTTCCCCAACTTCCTGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTCGCGTGGCAGAAGAGGGCAAGTCGTGAATTCAATGGCACCg < 1:75481/99‑1 (MQ=255) cctcttctgccacgcgaaTCCCCA‑CTTC‑‑GGCGCACAGCGCCAGGAAGTTGGGGATTCGCGTGGCAGAAGAGGGCAAGTCGTGAATTCAATGGCACCGGTTATCACCATCGACGGACCAAGCGGCTCGGGCAAGGGCACGGTCGCCGGGCt < 1:434796‑M1/132‑1 (MQ=255) cGTCGCCACCCAGTTCACCAACTTCCTGCCGCGGTGCTCC‑‑GAAGT‑GGGGATTCGCGTGGCAGAAGAGGGCAAGTCGTGAATTCAATGGCACCGGTTATCACCATCGACGGACCAAGCGGCTCGGGCAAGGGCACGGTCGCCGGGCTGAtt < 1:290222/150‑1 (MQ=255) tCGCCACCTCGTTCCCCAACTTCCTGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTCGCGTGGCAGAAGAGGGCAAGTCGTGAATTCAATGGCACCGGTTATCACCATCGACGGACCAAGCGGCTCGGGCAAGGGCACGGTc > 2:180913/1‑136 (MQ=255) tCGCCACCTCGTTCCCCAACTTCCTGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTCGCGTGGCAGAAGAGGGCAAGTCGTGAATTCAATGGCACCGGTTATCACCATCGACGGACCAAGCGGCTCGGGCAAGGGCACGGTc < 1:180913/136‑1 (MQ=255) cACCTCGTTCCCCAACTTCCTGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTCGCGTGGCAGAAGAGGGCAAGTCGTGAATTCAATGGCACCGGTTATCACCATCGACGGACCAAGCGGCTCGGGCAAGGGCACGGTCGCCGGGCTGATTGCCcgc > 1:225137/1‑150 (MQ=255) gaatccccacttcggcgcacagcgccaggaagttggggaTTCGCGTGGCAGAAGAGGGCAAGTCGTGAATTCTATGGCACCGGTTATCACCATCGACGGACCAAGCGGCTc > 1:536326‑M2/40‑111 (MQ=255) gaatccccacttcggcgcacagcgccaggaagttggggaTTCGCGTGGCAGAAGAGGGCAAGTCGTGAATTCAATGGCACCGGTTATCACCATCGACGGACCAAGCGGCTc < 2:536326‑M2/72‑1 (MQ=255) CCAACTTCCTGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTCGCGTGGCAGAAGAGGGCAAGTCGTGAATTCAATGGCACCGGTTATCACCATCGACGGACCAAGCGGCTCGGGCAAGGGCACGGTCGCCGGGCTGATTGCCCGCGAgctgggctg < 2:226586‑M1/150‑1 (MQ=255) CAACTTCCTGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTCGCGTGGCAGAAGAGGGCAAGTCGTGAATTCAATGGCACCGGTTATCACCATCGACGGACCAAGCGGCTCGGGCAAGGGCACGGTCGCCGGGCTGATTGCCCGCGAgctgggctgg < 2:371415‑M1/150‑1 (MQ=255) CAACTTCCTGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTCGCGTGGCAGAAGAGGGCAAGTCGTGAATTCAATGGCACCGGTTATCACCATCGACGGACCAAGCGGCTCGGGCAAGGGCACGGTCGCCGGGCTGATTGCCCGCGAgctgggctgg < 1:215093‑M1/150‑1 (MQ=255) tGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTCGCGTGGCAGAAGAGGGCAAGTCGTGAATTCAATGGCACCGGTTATCa < 2:146062/74‑1 (MQ=255) tGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTCGCGTGGCAGAAGAGGGCAAGTCGTGAATTCAATGGCACCGGTTATCa > 1:146062/1‑74 (MQ=255) ggCGCTGTGCGCC‑‑GAAGT‑GGGGATTCGCGTGGCAGAAGAGGGCAAGTCGTGAATTCAATGGCACCGGTTATCACCATCGACGGACCAAGCGGCTCGGGCAAGGGCACGGTCGCCGGGCTGATTGCCCGCGAGCTGGGCTGGAAGctgctg < 1:428125/150‑1 (MQ=255) tgtgCGCC‑‑GAAGT‑GGGGATTCGCGTGGCAGAAGAGGGCAAGTCGTGAATTCAATGGCACCGGTTATCACCATCGACGGACCAAGCGGCTCGGGCAAGGGCACGGTCGCCGGGCTGATTGCCCGCGAGCTGGGCTGGAAGCTGCTGGACTc > 1:368953/1‑150 (MQ=255) cgcC‑‑GAAGT‑GGGGATTCGCGTGGCAGAAGAGGGCAAGTCGTGAATTCAATGGCACCGGTTATCACCATCGACGGACCAAGCGGCTCGGGCAAGGGCACGGTCGCCGGGCTGATTGCCCGCGAGCTGGGCTGGAAGCTGCTGGACTCCGgc < 2:190652/150‑1 (MQ=255) aaggggggaTTCGCGTGGCAGAAGAGGGCAAGTCGTGAATTCAATGGCACCGGTTATCACCATCGACGGACCAAGCGGCTCGGGCAAGGGCACGGTCGCCGGGCCGATTGCCCGCGAGCTGGGCTGGAAGCTGCTGGACTCCGGCGCGCt < 1:24189‑M2/141‑1 (MQ=255) gT‑GGGGATTCGCGTGGCAGAAGAGGGCAAGTCGTGAATTCAATGGCACCGGTTATCACCATCGACGGACCAAGCGGCTCGGGCAAGGGCACGGTCGCCGGGCTGATTGCCCGCGAGCTGGGCTGGAAGCTGCTGGACTCCGGCGCGCTGt < 2:225137/150‑1 (MQ=255) | AGTGCATGGGCATGGTGACCACCGCATCGCCATGGCCTTTAGCGTGGCTTCGCTGCGCGCCAGTGCGCCGATTCGCATTCATGACTGCGCCAACGTCGCCACCTCGTTCCCCAACTTCCTGGCGCTGTGCGCC‑‑GAAGT‑GGGGATTCGCGTGGCAGAAGAGGGCAAGTCGTGAATTCAATGGCACCGGTTATCACCATCGACGGACCAAGCGGCTCGGGCAAGGGCACGGTCGCCGGGCTGATTGCCCGCGAGCTGGGCTGGAAGCTGCTGGACTCCGGCGCGCTGT > NC_002947/1978449‑1978734 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |