New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 2228963 = | 15 (0.650) | 3 (0.130) | 3/242 | NT | 13.5% | coding (56/783 nt) | ycfH | tRNA D‑aminoacylase |
? | NC_002947 | 2228999 = | 24 (1.070) | coding (92/783 nt) | ycfH | tRNA D‑aminoacylase |
CTGCAACTGCCGGGTGCCCGCTGATTTTCCATTTTTCATGTGTGCCGTTATCCCATGCTCGTAGATTCCCATTGCCACCTCGACCGTCTTGACCTCACTGCTCACCAGGGCTCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGTGCACCC > NC_002947/2228854‑2229107 | gggtgcacgccgaccgagcagtcgacgtcagcgtactgctcgctcagcgccttcactgcacccgcattctcggcactgacgccaatgcacaggaaatgcccgaccccacGCTCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTggg > 1:249427‑M1/110‑150 (MQ=255) cccGCTGATTTTCCATTTTTCATGTGTGCCGTGATCCCAGGCTCGTAGATTCCCATTGCCACCTCGACCGTCTTGACCTCACTGATCACTAGGGCTACCTCGACGCGGCCCTCCATGCGGCGCGGGAGCGTGGGGTCGGGCATTTCCtgt > 2:135947/1‑150 (MQ=255) gCTGATTTTCCATTTTTCATGTGTGCCGTTATCCCATGCTCGTAGATTCCCATTGCCACCTCGACCGTCTTGACCTCACTGCTCACCAGGGCTCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCgg > 2:447621/1‑136 (MQ=255) gCTGATTTTCCATTTTTCATGTGTGCCGTTATCCCATGCTCGTAGATTCCCATTGCCACCTCGACCGTCTTGACCTCACTGCTCACCAGGGCTCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCgg < 1:447621/136‑1 (MQ=255) gCTGATTTTCCATTTTTCATGTGTGCCGTTATCCCATGCTCGTAGATTCCCATTGCCACCTCGACCGTCTTGACCTCACTGCTCACCAGGGCTCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCa > 1:473421/1‑150 (MQ=255) cATTTTTCATGTGTGCCGTTATCCCATGCTCGTAGATTCCCATTGCCACCTCGACCGTCTTGACCTCACTGATCAAAAGAGCGCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAg > 2:147379/1‑150 (MQ=255) aTTTTTCATGTGTGCCGTTATCCCATGCTCGTAGATTCCCATTGCCACCTCGACCGTCTTGACCTCACTGCTCACCAGGGCTCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCtg > 2:554836/1‑135 (MQ=255) aTTTTTCATGTGTGCCGTTATCCCATGCTCGTAGATTCCCATTGCCACCTCGACCGTCTTGACCTCACTGCTCACCAGGGCTCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGt > 1:58053/1‑150 (MQ=255) aTTTTTCATGTGTGCCGTTATCCCATGCTCGTAGATTCCCATTGCCACCTCGACCGTCTTGACCTCACTGCCCACCAGGGCTCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCtg < 1:554836/135‑1 (MQ=255) ttATCCCATGCTCGTAGATTCCCATTGCCACCTCGACCGTCTTGACCTCACTGCTCACCAGGGCTCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGc > 1:453977/1‑150 (MQ=255) tATCCCATGCTCGTAGATTCCCATTGCCACCTCGACCGTCTTGACCTCACTGCTCACCAGGGCTCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCa < 2:169795/150‑1 (MQ=255) ccACCTCGACCGTCTTGACCTCACTGCTCACCAGGGCTCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGGGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGc > 1:200178/1‑150 (MQ=255) cACCTCGACCGTCTTGACCTCACTGCTCACCAGGGCTCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCt > 1:175553/1‑150 (MQ=255) tgacgccaatgcacaggaaatgcccgaccccacGCTCCCTCGACGCTGCCCTGCAGGCGGCGCGTGa < 1:450395‑M1/34‑1 (MQ=255) tgacgccaatgcacaggaaatgcccgaccccacGCTCCCTCGACGCTGCCCTGCAGGCGGCGCGTGa > 2:450395‑M1/34‑67 (MQ=255) cTCGACCGTCTTGACCTCACTGCTCACCAGGGCTCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGAc < 2:473421/150‑1 (MQ=255) tCACTGCTCACCAGGGCTCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTgg < 1:135947/150‑1 (MQ=255) tGCTCACCAGGGCTCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGt > 1:408952/1‑150 (MQ=255) ccAGGGCTCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGTGCAccc > 1:437422/1‑150 (MQ=255) | CTGCAACTGCCGGGTGCCCGCTGATTTTCCATTTTTCATGTGTGCCGTTATCCCATGCTCGTAGATTCCCATTGCCACCTCGACCGTCTTGACCTCACTGCTCACCAGGGCTCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGTGCACCC > NC_002947/2228854‑2229107 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |