New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2228963 =	15 (0.650)	3 (0.130)	3/242	NT	13.5%	coding (56/783 nt)	ycfH	tRNA D‑aminoacylase
	?	NC_002947	2228999 =	24 (1.070)					coding (92/783 nt)	ycfH	tRNA D‑aminoacylase

CTGCAACTGCCGGGTGCCCGCTGATTTTCCATTTTTCATGTGTGCCGTTATCCCATGCTCGTAGATTCCCATTGCCACCTCGACCGTCTTGACCTCACTGCTCACCAGGGCTCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGTGCACCCGCTGGACCTGGCCCCTGGCGAAACCCCGGCGTTGGAATGGT  >  NC_002947/2228854‑2229148                                                                                                                                                  |                                                                                                                                                      gggtgcacgccgaccgagcagtcgacgtcagcgtactgctcgctcagcgccttcactgcacccgcattctcggcactgacgccaatgcacaggaaatgcccgaccccacGCTCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTggg                                                                                                                                                   >  1:249427‑M1/110‑150 (MQ=255)                 cccGCTGATTTTCCATTTTTCATGTGTGCCGTGATCCCAGGCTCGTAGATTCCCATTGCCACCTCGACCGTCTTGACCTCACTGATCACTAGGGCTACCTCGACGCGGCCCTCCATGCGGCGCGGGAGCGTGGGGTCGGGCATTTCCtgt                                                                                                                                   >  2:135947/1‑150 (MQ=255)                    gCTGATTTTCCATTTTTCATGTGTGCCGTTATCCCATGCTCGTAGATTCCCATTGCCACCTCGACCGTCTTGACCTCACTGCTCACCAGGGCTCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCgg                                                                                                                                              >  2:447621/1‑136 (MQ=255)                    gCTGATTTTCCATTTTTCATGTGTGCCGTTATCCCATGCTCGTAGATTCCCATTGCCACCTCGACCGTCTTGACCTCACTGCTCACCAGGGCTCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCgg                                                                                                                                              <  1:447621/136‑1 (MQ=255)                    gCTGATTTTCCATTTTTCATGTGTGCCGTTATCCCATGCTCGTAGATTCCCATTGCCACCTCGACCGTCTTGACCTCACTGCTCACCAGGGCTCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCa                                                                                                                                >  1:473421/1‑150 (MQ=255)                              cATTTTTCATGTGTGCCGTTATCCCATGCTCGTAGATTCCCATTGCCACCTCGACCGTCTTGACCTCACTGATCAAAAGAGCGCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAg                                                                                                                      >  2:147379/1‑150 (MQ=255)                               aTTTTTCATGTGTGCCGTTATCCCATGCTCGTAGATTCCCATTGCCACCTCGACCGTCTTGACCTCACTGCTCACCAGGGCTCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCtg                                                                                                                                    >  2:554836/1‑135 (MQ=255)                               aTTTTTCATGTGTGCCGTTATCCCATGCTCGTAGATTCCCATTGCCACCTCGACCGTCTTGACCTCACTGCTCACCAGGGCTCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGt                                                                                                                     >  1:58053/1‑150 (MQ=255)                               aTTTTTCATGTGTGCCGTTATCCCATGCTCGTAGATTCCCATTGCCACCTCGACCGTCTTGACCTCACTGCCCACCAGGGCTCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCtg                                                                                                                                    <  1:554836/135‑1 (MQ=255)                                                ttATCCCATGCTCGTAGATTCCCATTGCCACCTCGACCGTCTTGACCTCACTGCTCACCAGGGCTCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGc                                                                                                    >  1:453977/1‑150 (MQ=255)                                                 tATCCCATGCTCGTAGATTCCCATTGCCACCTCGACCGTCTTGACCTCACTGCTCACCAGGGCTCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCa                                                                                                   <  2:169795/150‑1 (MQ=255)                                                                           ccACCTCGACCGTCTTGACCTCACTGCTCACCAGGGCTCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGGGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGc                                                                         >  1:200178/1‑150 (MQ=255)                                                                            cACCTCGACCGTCTTGACCTCACTGCTCACCAGGGCTCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCt                                                                        >  1:175553/1‑150 (MQ=255)                                                                               cTCGACCGTCTTGACCTCACTGCTCACCAGGGCTCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGAc                                                                     <  2:473421/150‑1 (MQ=255)                                                                                               tCACTGCTCACCAGGGCTCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTgg                                                     <  1:135947/150‑1 (MQ=255)                                                                                                   tGCTCACCAGGGCTCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGt                                                 >  1:408952/1‑150 (MQ=255)                                                                                                         cccacgctcacgcgccgcctgcagggcagcgtcgagggagcGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTCGGCGTGCAccc                                           >  1:249427‑M2/42‑150 (MQ=255)                                                                                                         ccAGGGCTCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGTGCAccc                                           >  1:437422/1‑150 (MQ=255)                                                                                                                tcacgcgccgcctgcagggcagcgtcgagggagcGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCa                                                                                                                       <  1:450395‑M2/33‑1 (MQ=255)                                                                                                                tcacgcgccgcctgcagggcagcgtcgagggagcGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCa                                                                                                                       >  2:450395‑M2/35‑67 (MQ=255)                                                                                                                   cTCGACGCTGCCCTGCAGGTGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGTGCACCCGCTGGACCTg                                 >  2:172528/1‑150 (MQ=255)                                                                                                                   cTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGt                                                                                                                         <  1:257579/62‑1 (MQ=255)                                                                                                                   cTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGt                                                                                                                         >  2:257579/1‑62 (MQ=255)                                                                                                                   cTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGt                                                 <  1:264691/134‑1 (MQ=255)                                                                                                                   cTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGt                                                 >  2:264691/1‑134 (MQ=255)                                                                                                                    tCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCTTTGGGGTCAGTGCCGAGCATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGTGGACCCGCTGGACCTgg                                >  1:477811/1‑150 (MQ=255)                                                                                                                    tCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGTGCACCCGCTGGACCTgg                                >  2:137777/1‑150 (MQ=255)                                                                                                                     cGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGTGCACCCGCTGGACCTGGc                               <  2:58053/150‑1 (MQ=255)                                                                                                                                                  gTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGTGCACCCGCTGGACCTGGCCCCTGGCGAAACCCCGGCGTTGGAATGgt  <  2:408952/150‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                      CTGCAACTGCCGGGTGCCCGCTGATTTTCCATTTTTCATGTGTGCCGTTATCCCATGCTCGTAGATTCCCATTGCCACCTCGACCGTCTTGACCTCACTGCTCACCAGGGCTCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGTGCACCCGCTGGACCTGGCCCCTGGCGAAACCCCGGCGTTGGAATGGT  >  NC_002947/2228854‑2229148

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.