| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2668066 = | 20 (0.870) | 5 (0.280) | 5/190 | NT | 27.6% | intergenic (+41/‑126) | prpF/prpD | aconitate isomerase/2‑methylcitrate dehydratase |
| ? | NC_002947 | 2668155 = | 11 (0.630) | intergenic (+130/‑37) | prpF/prpD | aconitate isomerase/2‑methylcitrate dehydratase | |||||
CGAAGCACGCCAGGTGAATGGTGAGTGGACGGTAACCAAGGCAATCATGAGCCGTAGTGCTCGCGTGCTGATGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACAGGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAAC > NC_002947/2667917‑2668215 | cGAAGCACGCCAGGTGAATGGTGAGTGGACGGTAACCAAGGCAATCATGAGCCGTAGTGCTCGCGTGCTGATGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCgg < 1:310419/150‑1 (MQ=255) aCGCCAGGTGAATGGTGAGTGGACGGTAACCAAGGCAATCATGAGCCGTAGTGCTCGCGTGCTGATGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTc > 1:595529/1‑150 (MQ=255) gCCAGGTGAATGGTGAGTGGACGGTAACCAAGGCAATCATGAGCCGTAGTGCTCGCGTGCTGATGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTcgc > 2:77150/1‑150 (MQ=255) cAGGTGAATGGTGAGTGGACGGTAACCAAGGCAATCATGAGCCGTAGTGCTCGCGTGCTGATGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAGATCACCTCTGGCGCTCGGCTTCAAGAGGTGCCGCTTTGCGGCCCTTCGCgg < 1:95120/150‑1 (MQ=255) tcgacccggtagccgagggcgtaatcggccagggtttgtagcacccggtcgtaatccgggcgatcgttgaggtctacgttggcgctcatatacagctcccttcagaattgccggggctgctgtgcaGCCCTTCGCGCGCCTGCCCGATcc < 1:516938‑M1/24‑1 (MQ=255) tGGACGGTAACCAAGGCAATCATGAGCCGTAGTGCTCGCGTGCTGATGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGccc < 1:328349/143‑1 (MQ=255) tGGACGGTAACCAAGGCAATCATGAGCCGTAGTGCTCGCGTGCTGATGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGccc > 2:328349/1‑143 (MQ=255) gACGGTAACCAAGGCAATCATGAGCCGTAGTGCTCGCGTGCTGATGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCcaca < 1:77150/150‑1 (MQ=255) gcacccggtcgtaatccgggcgatcgttgatgtctacgttggcgctcatatccagctcccttcagaattgccggggctgctgtgcgGCCCTTCGCGGGCTTGCCCGCTCCCACAGGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCtgt > 1:557530‑M1/87‑150 (MQ=255) gcacccggtcgtaatccgggcgatcgttgaggtctacgttggcgctcatatccagctcccttcagaattgccggggctgctgtgcaGCCCTTCGCGGGCTTGCCCGCTCCCACAGGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCtgt < 1:39608‑M1/64‑1 (MQ=255) acccggtcgtaatccgggcgatcgttgaggtctacgttggcgctcatatccagctcccttcagaattgccggggctgctgtgcaGCCCTTCGCGGGCTTGCCCGCTCCCACAGGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCTGTgg > 2:39608‑M1/85‑150 (MQ=255) ggCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGcc > 2:233020/1‑91 (MQ=255) ggCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGcc < 1:233020/91‑1 (MQ=255) gTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCCCAGGGATATCACCGCAACCCAAGCCTCTGAT‑TACCTGTGGGAGCGGGCAAGCCcgcg > 2:147161/1‑150 (MQ=18) gcgTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACAGGGATATCACAGCATTCAAAAATTATGAT‑TACCTGTGGGAGCGGGCAAGCCCGCGAAgg < 1:147161/150‑1 (MQ=17) gtctacgttggcgctcatatccagctcccttcagaattgccggggctgctgtgcaGCCCTTCGCGGGCTTGCCCGCTCCCACAGGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCgg > 2:365740‑M1/56‑127 (MQ=255) gtctacgttggcgctcatatccagctcccttcagaattgccggggctgctgtgcaGCCCTTCGCGGGCTTGCCCGCTCCCACAGGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCgg < 1:365740‑M1/72‑1 (MQ=255) gATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGATCTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACAGGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCAcagca < 1:375449/150‑1 (MQ=255) cTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTGGCCCGCCCCCACAGGTA‑ATCACGGGGTTTGCATGCTGTGATCTCCCTGTGGGAGCGGTCAAGCCCGCGAAGGGCTGCACAGCAGcccc < 2:595529/150‑1 (MQ=255) atatccagctcccttcagaattgccggggctgctgtgcaGCCCTTCGCGGGCTTGCCCGCTCCcaca < 2:431477‑M1/28‑1 (MQ=255) atatccagctcccttcagaattgccggggctgctgtgcaGCCCTTCGCGGGCTTGCCCGCTCCcaca > 1:431477‑M1/40‑67 (MQ=255) ctccacTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACAGGTA‑ATCACAGGGTTTGAATGCTGTGAGCTCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCt < 1:111262/148‑1 (MQ=255) cacTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACAGGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGaa > 1:73803/1‑150 (MQ=255) tCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACAGGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCAGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTgg > 1:133242/1‑150 (MQ=255) cTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACAGGTA‑ATCACAgg < 2:450784/62‑1 (MQ=255) cTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACAGGTA‑ATCACAgg > 1:450784/1‑62 (MQ=255) ttCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACAGGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATg > 1:421926/1‑150 (MQ=255) ttCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACAGGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCTGCGGGAGCGGGCAAGCCCGCGAAGGGCTCCACAGCAGCCCCGGCAATTCCGACGGGAGCTGGATATg > 2:127941/1‑150 (MQ=255) aaGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACAGGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAgc > 2:124151/1‑150 (MQ=255) GCCCTTCGCGGGCTTGCCCGCTCCCACAGGGA‑ATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCACGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAAc > 1:591391‑M1/1‑150 (MQ=255) | CGAAGCACGCCAGGTGAATGGTGAGTGGACGGTAACCAAGGCAATCATGAGCCGTAGTGCTCGCGTGCTGATGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACAGGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAAC > NC_002947/2667917‑2668215 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |