| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2668066 = | 20 (0.870) | 5 (0.280) | 5/190 | NT | 27.6% | intergenic (+41/‑126) | prpF/prpD | aconitate isomerase/2‑methylcitrate dehydratase |
| ? | NC_002947 | 2668155 = | 11 (0.630) | intergenic (+130/‑37) | prpF/prpD | aconitate isomerase/2‑methylcitrate dehydratase | |||||
GATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACAGGTAATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAACGATCGCCCGGATTACGACCGGGTGCTACAAACCCTGGCCGATTACGCCCTCGGCTACCGGGTCGA > NC_002947/2668014‑2668280 | gATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGATCTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACAGGTAATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCAcagca < 1:375449/150‑1 (MQ=255) cTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTGGCCCGCCCCCACAGGTAATCACGGGGTTTGCATGCTGTGATCTCCCTGTGGGAGCGGTCAAGCCCGCGAAGGGCTGCACAGCAGcccc < 2:595529/150‑1 (MQ=255) ctccacTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACAGGTAATCACAGGGTTTGAATGCTGTGAGCTCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCt < 1:111262/148‑1 (MQ=255) cacTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACAGGTAATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGaa > 1:73803/1‑150 (MQ=255) tCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACAGGTAATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCAGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTgg > 1:133242/1‑150 (MQ=255) ttCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACAGGTAATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATg > 1:421926/1‑150 (MQ=255) ttCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACAGGTAATCACAGGGTTTGAATGCTGTGATATCCCTGCGGGAGCGGGCAAGCCCGCGAAGGGCTCCACAGCAGCCCCGGCAATTCCGACGGGAGCTGGATATg > 2:127941/1‑150 (MQ=255) aaGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACAGGTAATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAgc > 2:124151/1‑150 (MQ=255) GCCCTTCGCGGGCTTGCCCGCTCCCACAGGGAATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCACGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAAc > 1:591391‑M1/1‑150 (MQ=255) TTCGCGGGCTTGCCCGCTCCCACAGGTAATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAACGATc < 2:329420‑M1/150‑1 (MQ=255) CGGGCTTGCCCGCTCCCACAGGTAATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAACGATCgccg > 2:421926‑M1/1‑149 (MQ=255) CTTGCCCGCTCCCACAGGTAATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAACGATCGCCCGGAt > 1:329420‑M1/1‑150 (MQ=255) TTGCCCGCTCCCACAGGTAATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCgg < 1:476903‑M1/92‑1 (MQ=255) TTGCCCGCTCCCACAGGTAATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCgg > 2:476903‑M1/1‑92 (MQ=255) ccgctcccacagggatatcacagcattcaaaccctgtgattacctgtgggagcgggcaagcccgcgaagggcTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGAc < 1:365740‑M2/55‑1 (MQ=255) ccgctcccacagggatatcacagcattcaaaccctgtgattacctgtgggagcgggcaagcccgcgaagggcTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGAc > 2:365740‑M2/73‑127 (MQ=255) CCGCTCCCACAGGTAATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAACGATCGCCCGGATTACGa < 2:527091‑M1/150‑1 (MQ=255) ccacagggatatcacagcattcaaaccctgtgattacctgtgggagcgggcaagcccgcgaagggcTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAACGATCGCCCGGATTACGACCGGGt > 2:39608‑M2/67‑150 (MQ=255) acagggatatcacagcattcaaaccctgtgattacctgtgggagcgggcaagcccgcgaagggcTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAACGATCGCCCGGATTACGACCGGGTGc < 1:39608‑M2/86‑1 (MQ=255) acagggatatcacagcattcaaaccctgtgattacctgtgggagcgggcaagcccgcgaagggcCGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACATCAACGATCGCCCGGATTACGACCGGGTGc > 1:557530‑M2/65‑150 (MQ=255) gggTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAACGATCGCCCGGATTACGACCGGGTGCTACAAACCCTGGc < 1:124151/150‑1 (MQ=255) tgATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAgc > 2:524787/1‑80 (MQ=255) tgATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAgc < 1:524787/80‑1 (MQ=255) tgtgggagcgggcaagcccgcgaagggcTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGatat < 2:431477‑M2/39‑1 (MQ=255) tgtgggagcgggcaagcccgcgaagggcTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGatat > 1:431477‑M2/29‑67 (MQ=255) ggatcgggcaggcgcgcgaagggcTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGTATATGAGCGCCAACGTAGACCTCAACGATCGCCCGGATTACGACCGGGTGCTACAAACCCTGGCCGATTACGCCCTCGGCTACCGGGTCGa < 1:516938‑M2/126‑1 (MQ=255) | GATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACAGGTAATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAACGATCGCCCGGATTACGACCGGGTGCTACAAACCCTGGCCGATTACGCCCTCGGCTACCGGGTCGA > NC_002947/2668014‑2668280 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |