New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 3052758 = | 23 (1.000) | 4 (0.180) | 4/234 | NT | 14.4% | coding (1415/1899 nt) | PP_2664 | two‑component system sensor histidine kinase/response regulator |
? | NC_002947 | 3052825 = | 26 (1.200) | coding (1482/1899 nt) | PP_2664 | two‑component system sensor histidine kinase/response regulator |
GCCGAAGAACACCTGCAAGACATGTTCCTGGAGTTCAAGCGGGGTGATGTGCAGCGCCCGGACCAGGACCGTGGGCTGGGTCTGGGCCTGGCAATCGTGGAGAAGATCGCCGGCATCCTCGGCCACCGGATCCGCGTGCGTTCATGGCTGGGCAAAGGCTCGGTGTTCGCTGTCGAGGTGCCGCTGAGCACCACTGCTCCCAAAGCCCAGCCGAGCCAGGTTATCTGCGAGCCGATGCTCGAACGCTTGCGCGGGGCGAGGGTGTGGGTGCTGGATAACGATGCGGCGAT > NC_002947/3052613‑3052902 | gCCGAAGAACACCTGCAAGACATGTTCCTGGAGTTCAAGCGGGGTGATGTGCAGCGCCCGGACCAGGACCGTGGGCTGGGTCTGGGCCTGGCAATCGTGGAGAAGATCGCCGGCATCCTCGGCCACCGGATCCGCGTGCGTTCATGGCTg < 2:342526/150‑1 (MQ=255) tccgacagcgcagtcaccacacggcagccccaaccttccagcaaagtgcgcatgcccgcgcaaatcgccgcatcgttatccagcacccacaccctcgccccgcgcaagcgttcgaaaaaaggatcgcaaataacctggcccggtcgggtt < 2:497467‑M1/9‑8 (MQ=255) acCTGCAAGACATGTTCCTGGAGTTCAAGCGGGGTGATGTGCAGCGCCCGGACCAGGACCGTGGGCTGGGTCTGGGCCTGGCAATCGTGGAGAAGATCGCCGGCATCCTCGGCCACCGGATCCGCGTGCGTTCATGGCTGGGCAAAGGCt > 2:559847/1‑150 (MQ=255) cAAGACATGTTCCTGGAGTTCAAGCGGGGTGATGTGCAGCGCCCGGACCAGGACCGTGGGCTGGGTCTGGGCCTGGCAATCGTGGAGAAGATCGCCGGCATCCTCGGCCACCGGATCCGCGTGCGTTCATGGCTGGGCAAAGGCTCGgtg < 1:559847/150‑1 (MQ=255) aaGACATGTTCATGGAGTTCAAGCGGGGTGATGTGCAGCGCCCGGACCAGGACCGTGGGCTGGGTCTGGGCCTGGCAATCGTGGAGAAGATCGCCGGCATCCTCGGCCACCGGATCCGCGTGCGTTCATGGCTGGGCAAAGGCTCGgtgt < 1:127614/150‑1 (MQ=255) cttccagcaaagtgcgcatgcccgcgcaaatcgccgcatcgttatccagcacccacaccctcgccccgcgcaagcgttcgagcatcggctcgcagataacctggctcGGCTGGGCAAAGGCTCGGTGTTCGCTGTCGAGGTGCCGCTGAg < 1:440671‑M1/43‑1 (MQ=255) gATGTGCAGCGCCCGGACCAGGACCGTGGGCTGGGTCTGGGCCTGGCAATCGTGGAGAAGATCGCCGGCATCCTCGGCCACCGGATCCGAGTGCGTTCATGGCTGGGCAAAGGCTCGGTGTTCGCTGTCGAGGTGCCGCTGAGCACCACt < 2:116783/150‑1 (MQ=255) tgCAGCGCCCGGACCAGGACCGTGGGCTGGGTCTGGGCCTGGCAATCGTGGAGAAGATCGCCGGCATCCACGGCCACCGGATCCGCGTGCGTTCATGGCTGGGCAAAGGCTCGGTGTTCGCTGTCGAGGTGCCGCTGAGCACCACTGCTc > 1:200234/1‑150 (MQ=255) aGCGCCCGGACCAGGACCGTGGGCTGGGTCTGGGCCTGGCAATCGTGGAGAAGATCGCCGGCATCCTCGGCCACCGGATCCGCGTGCGTTCATGGCTGGGCAAAGGCTCGGTGTTCGCTGTCGAGGTGCCGCTGAGCACCACTGCTCCCa > 1:68476/1‑150 (MQ=255) gcgcaaatcgccgcatcgttatccagcacccacaccctcgccccgcgcaagcgttcgagcatcggctcgcagataacctggctcGGCTGGGCAAAGGCTCGGTGTTCGCTGTCGAGGTGCCGCTGAGCACCACTGCTCCCAAAGCCCAGc > 2:440671‑M1/85‑150 (MQ=255) aGGACCGTGGGCTGGGTCTGGGCCTGGCAATCGTGGAGACGATCGCCGGCATCCTCGGCCACCGGATCCGCGTGCGTTCATGGCTGGGCAAAGGCTCGGTGTTCGCTGTCGAGGTGCCGCTGAGca > 1:65970/1‑126 (MQ=255) aGGACCGTGGGCTGGGTCTGGGCCTGGCAATCGTGGAGAAGATCGCCGGCATCCTCGGCCACCGGATCCGCGTGCGTTCATGGCTGGGCAAAGGCTCGGTGTTCGCTGTCGAGGTGCCGCTGAGca < 2:65970/126‑1 (MQ=255) ggACCGTGGGCTGGGTCTGGGCCTGGCAATCGTGGAGAAGATCGCCGGCATCCTCGGCCACCGGATCCGCGTGCGTTCATGGCTGGGCAAAGGCTCGGTGTTCGCTGTCGAGGTGCCGCTGAGCACCACTGCTCCCAAAGCCCAGCCGAg > 1:466443/1‑150 (MQ=255) ccGTGGGCTGGGTCTGGGCCTGGCAATCGTGGAGAAGATCGCCGGCATCCTCGGCCACCGGATCCGCGTGCGTTCATGGCTGGGCAAAGGCTCGGTGTTCGCTGTCGAGGTGCCGCTGAGCACCACTGCTCCCAAAGCCCAGCCGAGcgg > 2:285997/1‑148 (MQ=255) cGTGGGCTGGGTCTGGGCCTGGCAATCGTGGAGAAGATCGCCGGCATCCTCGGCCACCGGATCCGCGTGCGTTCATGGCTGGGCAAAGGCTCGGTGTGCGCTGTCGAGGTGCCGCTGAGCACCACTGCTCCCAAAGCCCAGCCGAGCCAg > 1:55944/1‑150 (MQ=255) cTGGGTCTGGGCCTGGCAATCGTGGAGAAGATCGCCGGCATCCTCGGCCACCGGATCCGCGTGCGTTCATGGCTGGGCAAAGGCTCGGTGtt > 1:252883/1‑92 (MQ=255) cTGGGTCTGGGCCTGGCAATCGTGGAGAAGATCGCCGGCATCCTCGGCCACCGGATCCGCGTGCGTTCATGGCTGGGCAAAGGCTCGGTGtt < 2:252883/92‑1 (MQ=255) tCTGGGCCTGGCAATCGTGGAGAAGATCGCCGGCATCCTCGGCCACCGGATCCGCGTGCGTTCATGGCTGGGCAAAGGCTCGGTGTTCGCTGTCGAGGTGCCGCTGAGCACCACTGCTCCCAAAGCCCAGCCGAGCCAGGTTATCTGCGa > 1:269177/1‑150 (MQ=255) cctcgccccgcgcaagcgttcgagcatcggctcgcagataacctggctcGGCTGGGCAAAGGCTCGGTGTTCGCTGTCGAGGTGCCGCTGAGCACCACTGCTCCCaaa > 1:430797‑M1/50‑108 (MQ=255) cctcgccccgcgcaagcgttcgagcatcggctcgcagataacctggctcGGCTGGGCAAAGGCTCGGTGTTCGCTGTCGAGGTGCCGCTGAGCACCACTGCTCCCaaa < 2:430797‑M1/59‑1 (MQ=255) aTCGCCGGCATCCTCGGCCACCGGATCCGCGTGTGTTCATGGCTGGGCAAAGGCTCGGTGTTc < 2:342466/63‑1 (MQ=255) aTCGCCGGCATCCTCGGCCACCGGATCCGCGTGTGTTCATGGCTGGGCAAAGGCTCGGTGTTc > 1:342466/1‑63 (MQ=255) cGGCATCCTCGGCCACCGGATCCGCGTGCGTTCATGGCTGGGCAAAGGCTCGGTGTTCGCTGTCGAGGTGCCGCTGAGCACCACTGCTCCCAAAGCCCAGCCGAGCCAGGTTATCTGCGAGCCGATGCTCGAACGCTTGCGCGGGGCGAg > 2:532903/1‑150 (MQ=255) cTCGGCCACCGGATCCGCGTGCGTTGATGGCTGTGCAAAGGCTCGGTGTTCGCTGTCGAGGGGCCGCTGAGCACCACTGCTCCCAAGGCCCAGCCGAGCCAGGTTATCTGCGAGCCGATGCTCGAACGCTTGCGCGGGGCGAGGGTGTgg < 2:539790/150‑1 (MQ=255) gCCACCGGATTCGCGTGCGTTCATGGCTGGGCAAAGGCTCGGTGTTCACTGTCGAGGTGCCGCTGAGCACCACTGCTCCCAAATCCCAGCCGAGCCAGGTTATCTGCGAGCCGATGCTCGAACGCTTGCGCGGGGCGAGGGTGTGGGTGc < 2:411165/150‑1 (MQ=255) aCCGGATCCGCGTGCGTTCATGGCTGGGCAAAGGCTCGGTGTTCGCTGTCGAGGTGCCGCTGAGCACCACTGCTCCCAAAGCCCAGCCGAGCCAGGTTATCTGCGAGCCGATGCTCGAAc < 2:311455/120‑1 (MQ=255) aCCGGATCCGCGTGCGTTCATGGCTGGGCAAAGGCTCGGTGTTCGCTGTCGAGGTGCCGCTGAGCACCACTGCTCCCAAAGCCCAGCCGAGCCAGGTTATCTGCGAGCCGATGCTCGAAc > 1:311455/1‑120 (MQ=255) ccGGATCCGCGTGCGTTCATGGCTGGGCAAAGGCTCGGTGTTCGCTGTCGAGGTGCCGCTGAGCACCACTGCTCCCAAAGCCCAGCCGAGCCAGGTTATCTGCGAGCCGATGCTCGAACGCTTGCGCGGGGCGAGGGTGTGGGTGCTGGa > 1:302266/1‑150 (MQ=255) cgtgcgtTCATGGCTGGGCAAAGGCTCGGTGTTCGCTGTCGAGGTGCCGCTGAGCACCACTGCTCCCAAAGCCCAGCCGAGCCAGGTTATCTGCGAGCCGATGCTCGAACGCTTGCGCGGGGCGAGGGTGTGGGTGCTGGATAACGATgc < 2:200234/150‑1 (MQ=255) ttCATGGCTGGGCAAAGGCTCGGTGTTCGCTGTCGAGATGCCGCTGAGCACCACTGCTCCCAAAGCCCAGCCGAGCCAGGTTATCTGCGAGCCGATGCGCGAACCATTGCGCGGGGCGAGGGTGGGGGTGCTGGATAACGATGCGGCGAt > 1:497467/1‑150 (MQ=255) | GCCGAAGAACACCTGCAAGACATGTTCCTGGAGTTCAAGCGGGGTGATGTGCAGCGCCCGGACCAGGACCGTGGGCTGGGTCTGGGCCTGGCAATCGTGGAGAAGATCGCCGGCATCCTCGGCCACCGGATCCGCGTGCGTTCATGGCTGGGCAAAGGCTCGGTGTTCGCTGTCGAGGTGCCGCTGAGCACCACTGCTCCCAAAGCCCAGCCGAGCCAGGTTATCTGCGAGCCGATGCTCGAACGCTTGCGCGGGGCGAGGGTGTGGGTGCTGGATAACGATGCGGCGAT > NC_002947/3052613‑3052902 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |