New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3562695 =	25 (1.080)	4 (0.180)	4/236	NT	16.1%	coding (1172/1296 nt)	PP_3146	oxidoreductase
	?	NC_002947	3562720 =	18 (0.820)					coding (1147/1296 nt)	PP_3146	oxidoreductase

GGCGCTGCAAACGTTGCTGCCCACTCAACCCAGGGCCTCACGCAAGCGGTACCACAACATGCCCAGTGCCAGCAGGGGTGAGCGCAGGGCCTTGCCGCCAGGGAAGGTCAGGTGCGGCACGGCGCTGAACACATCCAGGCCGTGGCTGTGGCCGAGGGCGATGCTTTCGGCCAGCAGTTTCGCCGTCCAGTGCGTCACGTTCAGCCCGTGCCCGGAATAGCCCTGGGCGTAATACACGTTAGGGTGCTGGTTCAGGCGCCCGACCTGAGGGAAACGGTTGGCGGTGATG  >  NC_002947/3562547‑3562835                                                                                                                                                     |                                                                                                                                             ggCGCTGCAAACGTTGCTGCCCACTCAACCCAGGGCCTCACGCAAGCGGTACCACAACATGCCCAGTGCCAGCAGGGGTGAGCGCAGGGCCTTGCCGCCAGGGAAGGTCAGGTGCGGCACGGCGCTGAACACATCCAGGCCGTGGCtgtg                                                                                                                                             <  1:66608/150‑1 (MQ=255)        cAAACGTTGCTGCCCACTCAACCCAGGGCCTCACGCAAGCGGTACCACAACATGCCCAGTGCCAGCAGGGGTGAGCGCAGGGCCTTGCCGCCAGGGAAGGTCAGGTGCGGCACGGCGCTGAACACATCCAGGCCGTGGCTGTGGCCGAgg                                                                                                                                      >  2:330040/1‑150 (MQ=255)        cAAACGTTGCTGCCCACTCAACCCAGGGCCTCACGCAAGCGGTACCACAACATGCCCAGTGCCAGCAGGGGTGAGCGCAGGGCCTTGCCGCCAGGGAAGGTCAGGTGCGGCACGGCGCTGAACACATCCAGGCCGTGGCTGTGGCCGAgg                                                                                                                                      <  1:490020/150‑1 (MQ=255)                  tgcCCACTCAACCCAGGGCCTCACGCAAGCGGTACCACAACATGCCCAGTGCCAGCAGGGGTGAGCGCAGGGCCTTGCCGCCAGGGAAGGTCAGGTGCGGCACGGCGCTGAACACATCCAGGCCGTGGCTGTGGCCGAGGGCGATGCttt                                                                                                                            <  2:370335/150‑1 (MQ=255)                    cccACTCAACCCAGGGCCTCACGCAAGCGGTACCACAACATGCCCAGTGCCAGCAGGGGTGAGCGCAGGGCCTTGCCGCCAGGGAAGGTCAGGTGCGGCACGGCGCTGAACACATCCAGGCCGTGGCTGTGGCCGAGGGCGATGCTTTCg                                                                                                                          <  1:220366/150‑1 (MQ=255)                     ccACTCAACCCAGGGCCTCACGCAAGCGGTACCACAACATGCCCAGTGCCAGCAGGGGTGAGCGCAGGGCCTTGCCGCCAGGGAAGGTCAGGTGCGGCACGGCGCTGAACACATCCAGGCCGTGGCTGTGGCCGAgg                                                                                                                                      >  2:354757/1‑137 (MQ=255)                     ccACTCAACCCAGGGCCTCACGCAAGCGGTACCACAACATGCCCAGTGCCAGCAGGGGTGAGCGCAGGGCCTTGCCGCCAGGGAAGGTCAGGTGCGGCACGGCGCTGAACACATCCAGGCCGTGGCTGTGGCCGAgg                                                                                                                                      <  1:354757/137‑1 (MQ=255)                                      tCACGCAAGCGGTACCACAACATGCCCAGTGCCAGCAGGGGTGAGCGCAGGGCCTTGCCGCCAGGGAAGGTCAGGTGCGGCACGGCGCTGAACACATCCAGGCCGTGGCTGTGGCCGAGGGCGATGCttt                                                                                                                            <  2:304586/130‑1 (MQ=255)                                      tCACGCAAGCGGTACCACAACATGCCCAGTGCCAGCAGGGGTGAGCGCAGGGCCTTGCCGCCAGGGAAGGTCAGGTGCGGCACGGCGCTGAACACATCCAGGCCGTGGCTGTGGCCGAGGGCGATGCttt                                                                                                                            >  1:304586/1‑130 (MQ=255)                                      tCACGCAAGCGGTACCACAACATGCCCAGTGCCAGCAGGGGTGAGCGCAGGGCCTTGCCGCCAGGGAAGGTCAGGTGCGGCACGGCGCTGAACACATCCAGGCCGTGGCTGTGGCCGAGGGCGATGCTTTCGGCCAGCAGTTTCGCCGTc                                                                                                        >  2:218613/1‑150 (MQ=255)                                                ggTACCACAACATGCCCAGTGCCAGCAGGGGTGAGCGCAGGGCCTTGCCGCCAGGGAAGGTCAGGTGCGGCACGGCGCTGAACACATCCAGGCCGTGGCTGTGGCCGAGGGCGATGCTTTCGGCCAGCAGTTTCGCCGTCCAGTGCGTCa                                                                                              <  1:12594/150‑1 (MQ=255)                                                              cccAGTGCCAGCAGGGGTGAGCGCAGGGCCTTGCCGCCAGGGAAGGTCAGGTGCGGCACGGCGCTGAACACATCCAGGCCGTGGCTGTGGCCGAGGGCGATGCTTTCGGCCAGCAGTTTCGCCGTCCAGTGCGTCACGTTCAGCCCGTGc                                                                                >  2:605873/1‑150 (MQ=255)                                                               ccAGTGCCAGCAGGGGTGAGCGCAGGGCCTTGCCGCCAGGGAAGGTCAGGTGCGGCACGGCGCTGAACACATCCAGGCCGTGGCTGTGGCCGAGGGCGATGCTTTCGGCCAGCAGTTTCGCCGTCCAGTGCGTCACGTTCAGCCCGTGcc                                                                               <  1:370974/150‑1 (MQ=255)                                                                        gcagGGGTGAGCGCAGGGCCTTGCCGCCAGGGAAGGTCAGGTGCGGCACGGCGCTGAACACATCCAGGCCGTGGCTGTGGCCGAGGGCGATGCTTTCGGCCAGCAGTTTCGCCGTCCAGTGCGTCACGTTCAGCCCGTGCCCGGAATAGc                                                                      >  1:167109/1‑150 (MQ=255)                                                                         cagcaccctaacgtgtattacgcccagggctattccgggcacgggctgaacgtgacgcactggacggcgaaactgcTGGCCGAGGGCGATGCTTTCGGCcagca                                                                                                                   <  2:25701‑M1/28‑1 (MQ=255)                                                                         cagcaccctaacgtgtattacgcccagggctattccgggcacgggctgaacgtgacgcactggacggcgaaactgcTGGCCGAGGGCGATGCTTTCGGCcagca                                                                                                                   >  1:25701‑M1/77‑104 (MQ=255)                                                                         cagGGGTGAGCGCAGGGCCTTGCCGCCAGGGAAGGTCAGGTGCGGCACGGCGCTGAACACATCCAGGCCGTGGCTGTGGCCGAGGGCGATGCTTTCGGCCAGCAGTTTCGCCGTCCAGTGCGTCACGTTCAGCCCGTGCCCGGAATAGcc                                                                     >  2:195371/1‑150 (MQ=255)                                                                               cctaacgtgtattacgcccagggctattccgggcacgggctgaacgtgacgcactggacggcgaaactgct                                                                                                                                              <  1:497667‑M1/1‑1 (MQ=255)                                                                               cctaacgtgtattacgcccagggctattccgggcacgggctgaacgtgacgcactggacggcgaaactgct                                                                                                                                              >  2:497667‑M1/71‑71 (MQ=255)                                                                                    gcAGGGCCTTGCCGCCAGGGAAGGTCAGGTGCGGCACGGCGCTGAACACATCCAGGCCGTGGCTGTGGCCGAGGGCGATGCTTTCGGCCAGCAGTTTCGCCGTCCAGTGCGTCACGTTCAGCCCGTGCCCGGAATAGccc                                                                    >  2:242208/1‑140 (MQ=255)                                                                                    gcAGGGCCTTGCCGCCAGGGAAGGTCAGGTGCGGCACGGCGCTGAACACATCCAGGCCGTGGCTGTGGCCGAGGGCGATGCTTTCGGCCAGCAGTTTCGCCGTCCAGTGCGTCACGTTCAGCCCGTGCCCGGAATAGccc                                                                    <  1:242208/140‑1 (MQ=255)                                                                                        tattacgcccagggctattccgggcacgggctgaacgtgacgcactggacggcgaaactgcTGGCCGAGGGCGATGCTTTCGGCca                                                                                                                      <  2:426658‑M1/25‑1 (MQ=255)                                                                                        tattacgcccagggctattccgggcacgggctgaacgtgacgcactggacggcgaaactgcTGGCCGAGGGCGATGCTTTCGGCca                                                                                                                      >  1:426658‑M1/62‑86 (MQ=255)                                                                                            ttGCCGCCAGGGAAGGTCAGGTGCGGCACGGCGCTGAACACATCCAGGCCGTGGCTGTGGCCGAGGGCGATGCTTTCGGCCAGCAGTTTCGCCGTCCAGTGCGTCACGTTCAGccc                                                                                    <  2:227414/116‑1 (MQ=255)                                                                                            ttGCCGCCAGGGAAGGTCAGGTGCGGCACGGCGCTGAACACATCCAGGCCGTGGCTGTGGCCGAGGGCGATGCTTTCGGCCAGCAGTTTCGCCGTCCAGTGCGTCACGTTCAGccc                                                                                    >  1:227414/1‑116 (MQ=255)                                                                                            ttGCCGCCAGGGAAGGTCAGGTGCGGCACGGCGCTGAACACATCCAGGCCGTGGCTGTGGCCGAGGGCGATGCTTTCGGCCAGCAGTTTCGCCGTCCAGTGCGTCACGTTCAGCCCGTGCCCGGAATAGCCCTGGGCGTAATACACGTTa                                                  >  1:293344/1‑150 (MQ=255)                                                                                                 gccAGGGAAGGTCAGGTGCGGCACGGCGCTGAACACATCCAGGCCGTGGCTGTGGCCGAGGGCGATGCTTTCGGCCAGCAGTTTCGCCGTCCAGTGCGTCACGTTCAGCCCGTGCCCGGAATAGCCCTGGGCGTAATACACGTTAGGGTg                                             >  1:108768/1‑150 (MQ=255)                                                                                                  ccAGGGAAGGTCAGGTGCGGCACGGCGCTGAACACATCCAGGCCGTGGCTGTGGCCGAGGGCGATGCTTTCGGCCAGCAGTTTCGCCGTCCAGTGCGTCACGTTCAGCCCGTGCCCGGAATAGCCCTGGGCGTAATACACGTTAGGGtca                                            <  1:330040/150‑3 (MQ=255)                                                                                                                         ggCGCTGAACACATCCAGGCCGTGGCCGTGGCCGAGGGCGATGCTTTCGGCCAGCAGTTTCGCCGTCCAGTGCGTCACGTTCAGCCCGTGCCCGGAATAGCCCTGGGCGTAATACACGTTAGGGTGCTGGTTCTGGCGCCCGACCTGAgg                     <  1:262428/150‑1 (MQ=255)                                                                                                                                      tCCAGGCCGTGGCTGTGGCCGAGGGCGATGCTTTCGGCCAGCAGTTTCGCCGTCCAGTGCGTCACGTTCAGCCCGTGCCCGGAATAGCCCTGGGCGTAATACACGTTAGGGTGCTGGTTCAGGCGCCCGACCTGAGGGAAACGGTTGGCg        >  1:565464/1‑150 (MQ=255)                                                                                                                                      tCCAGGCCGTGGCTGTGGCCGAGGGCGATGCTTTCGGCCAGCAGTTTCGCCGTCCAGTGCGTCACGTTCAGCCCGTGCCCGGAATAGCCCTGGGCGTAATACACGTTAGGGTGCTGGTTCAGGCGCCCGACCTGAGGGAAACGGTTGGCg        <  1:197343/150‑1 (MQ=255)                                                                                                                                            ccGTGGCTGTGGCCGAGGGCGATGCTTTCGGCCAGCAGTTTCGCCGTCCAGTGCGTCACGTTCAGCCCGTGCCCGGAATAGCCCTGGGCGTAATACACGTTAGGGTGCTGGTTCAGGCGCCCGACCTGAGGGAAACGGTTGGCGGTGATg  >  2:374227/1‑150 (MQ=255)                                                                                                                                                     TGGCCGAGGGCGATGCTTTCGGCCAGCAGTTTCGCCGTCCAGTGCGTCACGTTCAGCCCGTGCCCGGAATa                                                                        <  1:95278‑M1/71‑1 (MQ=255)                                                                                                                                                     TGGCCGAGGGCGATGCTTTCGGCCAGCAGTTTCGCCGTCCAGTGCGTCACGTTCAGCCCGTGCCCGGAATa                                                                        >  2:95278‑M1/1‑71 (MQ=255)                                                                                                                                                     |                                                                                                                                             GGCGCTGCAAACGTTGCTGCCCACTCAACCCAGGGCCTCACGCAAGCGGTACCACAACATGCCCAGTGCCAGCAGGGGTGAGCGCAGGGCCTTGCCGCCAGGGAAGGTCAGGTGCGGCACGGCGCTGAACACATCCAGGCCGTGGCTGTGGCCGAGGGCGATGCTTTCGGCCAGCAGTTTCGCCGTCCAGTGCGTCACGTTCAGCCCGTGCCCGGAATAGCCCTGGGCGTAATACACGTTAGGGTGCTGGTTCAGGCGCCCGACCTGAGGGAAACGGTTGGCGGTGATG  >  NC_002947/3562547‑3562835

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.