New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3915143	36 (1.560)	4 (0.180)	4/240	NT	10.1%	coding (68/1176 nt)	PP_3455	multidrug RND transporter membrane fusion protein
	?	NC_002947	= 3915164	37 (1.670)					coding (89/1176 nt)	PP_3455	multidrug RND transporter membrane fusion protein

TTCACACTCGCCCTACAGGTATTAACAGCCGCCCAGGCAGCGTCTGCCTTAGCATATACACGGTCATCATCGGAAGATCCGCATGCCTACTACCCTCTCCCCGTGCCTGCGCCCGTTGGCGCTCATGGCCTTGCTGAGCCTGTCC‑‑CTGGCCGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCACCGCGCAAGTGCGCGTAGAAACCCTGCAACTGCAGCCACTGGCCATCAGCAGTGAACTCAGCGGCCGTATCCTCGCGCCACGCACCGCCGAAGTGCGTGCGCGGGTCG  >  NC_002947/3914994‑3915292                                                                                                                                                        |                                                                                                                                                      atcACACTCGCCCTACAGGTATTAACAGCCGCCCAGGCAGCGCCTGCCTTAGCATATACACGGTCATCATCGGAAGATCCGCATGCCTACTACCCTCTCCCCGTGCCTGCACCCGTTGGCGCTCATGGCCTTGCTGAGCCTGTCC‑‑CTGGC                                                                                                                                                       >  2:558951‑M1/2‑150 (MQ=255)    ccacTCGCCCTACAGGTATTAACAGCCGCCCAGGCAGCGTCTGCCTTAGCATATACACGGTCATCATCGGAAGATCCGCATGCCTACTACCCTCTCCCCGTGCCTGCGCCCGTTGGCGCTCATGGCCTTGCTGAGCCTGTCC‑‑CTGGCCgg                                                                                                                                                    <  2:589396/149‑1 (MQ=255)      acTCGCCCTACAGGTATTAACAGCCGCCCAGGCAGCGTCTGCCTTAGCATATACACGGTCATCATCGGAAGATCCGCATGCCTACTACCCTCTCCCCGTGCCTGCGCCCGTTGGCGCTCATGGCCTTGCTGAGCCTGTCC‑‑CTGGCCGCCt                                                                                                                                                  >  2:569627/1‑150 (MQ=255)                                cccAGGCAGCGTCTGCCTTAGCATATACACGGTCATCATCGGAAGATCCGCATGCCTACTACCCTCTCCCCGTGCCTGCGCCCGTTGGCGCTCATGGCCTTGCTGAGCCTGTCC‑‑CTGGCCGGCTGCAGCGACAGCGCCGAGCCAGACGaa                                                                                                                        <  1:132003/150‑1 (MQ=255)                                  cAGGCAGCGTCTGCCTTAGCATATACACGGTCATCATCGGAAGATCCGCATGCCTACTACCCTCTCCCCGTGCCTGCGCCCGTTGGCGCTCATGGCCTTGCTGAGCCTGTCC‑‑CTGGCtcggcgctgtcgctgcagccggccagggacagg                                                                                                                      <  2:306523‑M1/150‑34 (MQ=255)                                     gCAGCGTCTGCCTTAGCATATACACGGTCATCATCGGAAGATCCGCATGCCTACTACCCTCTCCCCGTGCCTGCGCCCGTTGGCGCTCATGGCCTTGCTGAGCCTGTCC‑‑CTGGCCGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGc                                                                                                                   <  1:364547/150‑1 (MQ=255)                                          gTCTGCCTTAGCATATACACGGTCATCATCGGAAGATCCGCATGCCTACTACCCTCTCCCCGTGCCTGCGCCCGTTGGCGCTCATGGCCTTGCTGAGCCTGTCC‑‑CTGGCCGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCa                                                                                                              >  1:151762/1‑150 (MQ=255)                                           tCTGCCTTAGCATATACACGGTCACCATCGGAAGATCCGCATGCCTACTACCCTCTCCCCGTGCCTGCGCCCGTTGGCGCTCATGGCCTTGCTGAGCCTGTCC‑‑CTGGCCGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCAc                                                                                                             >  1:545496/1‑150 (MQ=255)                                            cTGCCTTAGCATATACACGGTCATCATCGGAAGATCCGCATGCCTACTACCCTCTCCCCGTGCCTGCTCCCGTTGGCGCTCATGGCCTTGCTGAGCCGGTTCGTCTGGCtcggcgctgtcgctgcagccggccagggacaggctcagcaa                                                                                                              <  1:221614‑M1/150‑42 (MQ=255)                                                 ttAGCATATACACGGTCATCATCGGAAGATCCGCATGCCTACTACCCTCTCCCCGTGCCTGCGCCCGTTGGCGCTCATGGCCTTGCTGAGCCTGTCC‑‑CTGGCCGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCACCGCGCa                                                                                                       >  1:90959/1‑150 (MQ=255)                                                    gCATATACACGGTCATCATCGGAAGATCCGCATGCCTACTACCCTCTCCCCGTGCCTGCGCCCGTTGGCGCTCATGGCCTTGCTGAGCCTGTCC‑‑CTGGCCGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCACCGCGCAAGt                                                                                                    <  2:56152/150‑1 (MQ=255)                                                     cATATACACGGTCATCATCGGAAGATCCGCATGCCTACTACCCTCTCCCCGTGCCTGCGCCCGTTGGCGCTAATGGTCTGGCTGAGCCTGTCC‑‑CTGGACGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCACCGCGCAAGTg                                                                                                   >  1:598973/1‑150 (MQ=255)                                                        ataCACGGTCATCATCGGAAGATCCGCATGCCTACTACCCTCTCCCCGTGCCTGCGCCCGTTGGCGCTCATGGCCTTGCTGAGCCTGTCC‑‑CTGGCCGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCACCGCGCAAGTgcgc                                                                                                <  1:130154/150‑1 (MQ=255)                                                           cacGGTCATCATCGGAAGATCCGCATGCCTACTACCCTCTCCCCGTGCCTGCGCCCGTTGGCGCTCATGGCCTTGCTGAGCCTGTCC‑‑CTGGCCGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCACCGCGCAAGTGCGCGTa                                                                                             >  1:71978/1‑150 (MQ=255)                                                                     atcGGAAGATCCGCATGCCTACTACCCTCTCCCCGTGCCTGCGCCCGTTGGCGCTCATGGCCTTGCTGAGCCTGTCC‑‑CTGGCCGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCACCGCGCAAGTGCGCGTAGAAACCCTGc                                                                                   >  2:81818/1‑150 (MQ=255)                                                                      tcGGAAGATCCGCATGCCTACTACCCTCTCCCCGTGCCTGCGCCCGTTGGCGCTCATGGCCTTGCTGAGCCTGTCC‑‑CTGGCCGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCACCGCGCAAGTgcgc                                                                                                >  2:71276/1‑136 (MQ=255)                                                                      tcGGAAGATCCGCATGCCTACTACCCTCTCCCCGTGCCTGCGCCCGTTGGCGCTCATGGCCTTGCTGAGCCTGTCC‑‑CTGGCCGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCACCGCGCAAGTgcgc                                                                                                <  1:71276/136‑1 (MQ=255)                                                                                 gCATGCCTACTACCCTCTCCCCGTGCCTGCGCCCGTTGGCGCTCATGGCCTTGCTGAGCCTGTCC‑‑CTGGCCGGCTGCCGTGGCCGACCAGAGCCAGACGAACAGGCCCCCACCGCGCAAGTGCGCGTAGAAACCCTGCAACTGCAGCCAc                                                                       >  1:320116/1‑150 (MQ=255)                                                                                       ctactaCCCTCTCCCCGTGCCTGCGCCCGTTGGCGCTCATGGCCTTGCTGAGCCTGTCC‑‑CTGGCCGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCACCGCGCACTTGcgcggtgggg                                                                                         <  1:494065/126‑7 (MQ=255)                                                                                       ctactaCCCTCTCCCCGTGCCTGCGCCCGTTGGCGCTCATGGCCTTGCTGAGCCTGTCC‑‑CTGGCCGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCACCGCGCACTTGcgcggtgggg                                                                                         >  2:494065/1‑120 (MQ=255)                                                                                           tacCCTCTCCCCGTGCCTGCGCCCGTTGGCGCTCATGGCCTTGCTGAGCCTGTCC‑‑CTGGCtcggcgctgtcgctgcagccggccagg                                                                                                                            >  1:323154‑M1/1‑60 (MQ=255)                                                                                           tacCCTCTCCCCGTGCCTGCGCCCGTTGGCGCTCATGGCCTTGCTGAGCCTGTCC‑‑CTGGCtcggcgctgtcgctgcagccggccagg                                                                                                                            <  2:323154‑M1/87‑28 (MQ=255)                                                                                               ctctCCCCGTGCCTGCGCCCGTTGGCGCTCATGGCCTTGCTGAGCCTGTCC‑‑CTGGCCGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCACCGCGCAAGTGCGCGTAGAAACCCTGCAACTGCAGCCACTGGCCATCAGCAGt                                                         >  2:68763/1‑150 (MQ=255)                                                                                                     ccGTGCCTGCGCCCGTTGGCGCTCATGGCCTTGCTGAGCCTGTCC‑‑CTGGCCGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCACCGCGCAAGTGCGCGTAGAAACCCTGCAACTGCAGCCACTGGCCATCAGCAGTGAACTc                                                   >  1:410299/1‑150 (MQ=255)                                                                                                     ccGTGCCTGCGCCCGTTGGCGCTCATGGCCTTGCTGAGCCTGTCC‑‑CTGGCCGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCACCGCGCAAGTGCGCGTAAACAGTCTGCAACTGCAGCCACTGGCCATCAGCAGTGAACTc                                                   >  1:436616/1‑150 (MQ=255)                                                                                                        tGCCTGCGCCCGTTGGCGCTCATGGCCTTGCTGAGCCTGTCC‑‑CTGGCCGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCACCGCGCAAGTGCGCGTAGAAACCCTGCAACTGCAGCCACTGGCCATCAGCAGTGAACTCAGc                                                <  2:151762/150‑1 (MQ=255)                                                                                                          ccTGCGCCCGTTGGCGCTCATGGCCTTGCTGAGCCTGTCC‑‑CTGGCCGGCTGCAGCGACATCGCCGAGCCAGACGAACAGGCCCCCACCGCGCAAGTGCGCGTAGAAACCCTGCAACTGCAGCCACTGGCCATCAGCAGTGAACTCAGCgg                                              <  2:545496/150‑1 (MQ=255)                                                                                                               gcCCGTTGGCGCTCATGGCCTTGCTGAGCCTGTCC‑‑CTGGCCGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCACCGCGCAAGTGCGCGTAGAAACCCTGCAACTGCAGCCACTGGCCATCAGCAGTGAACTCAGCGGCCGTa                                         >  1:584119/1‑150 (MQ=255)                                                                                                               gcCCGTTGGCGCTCATGGCCTTGCTGAGCCTGTCC‑‑CTGGCCGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCACCGCGCAAGTGCGCGTAGAAACCCTGCAACTGCAGCCACTGGCCATCAGCAGTGAACTCAGCGGCCGTa                                         >  1:384063/1‑150 (MQ=255)                                                                                                                 ccGTTGGCGCTCATGGCCTTGCTGAGCCTGTCC‑‑CTGGCCGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCACCGCGCAAGTGCGCGTAGAAACCCTGCAACTGCAGCCACTGGCCATCAGCAGTGAACTCAGCGGCCGTATc                                       >  2:59115/1‑150 (MQ=255)                                                                                                                  cGTTGGCGCTCATGGCCTTGCTGAGCCTGTCC‑‑CTGGCCGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCACCGCGCAAGTGCGCGTAGAAACCCTGCAACTGCAGCCACTGGCCATCAGCAGTGAACTCAGCGGCCGTATcc                                      >  2:532949/1‑150 (MQ=255)                                                                                                                    ttGGCGCTCATGGCCTTGCTGAGCCTGTCC‑‑CTGGCCGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCACCGCGCAAGTGCGCGTAGAAACCCTGCAACTGCAGCCACTGGCCATCAGCAGTGAACTCAGCGGCCGTATCCTc                                    <  1:81818/150‑1 (MQ=255)                                                                                                                        cgcTCATGGCCTTGCTGAGCCTGTCC‑‑CTGGCCGGCTGCAGCGACAGCGCCGAGCCCGCCGAACAGGCCCCCACCGCGCAAGTGCGCGTAGAAACCCTGCAACTGCAGCCACTGGCCATCAGCAGTGAACTCAGCGGCCGTATCCTCgcgc                                >  2:545897/1‑150 (MQ=255)                                                                                                                           tCATGGCCTTGCTGAGCCTGTCC‑‑CTGGCCGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCACCGCGCAAGTGCGCGTAGAAACCCTGCAACTGCAGCCACTGGCCATCAGCAGTGAACTCAGCGGCCGTATCCTCGCGCCAc                             >  1:27357/1‑150 (MQ=255)                                                                                                                             aTGGCCTTGCTGAGCCTGTCC‑‑CTGGCCGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCACCGCGCAAGTGCGCGTAGAAACCCTGCAACTGCAGCCACTGGCCATCAGCAGTGAACTGAGCGGCCGTATCCTCGCGCCACGc                           >  1:473243/1‑150 (MQ=255)                                                                                                                               ggCCTTGCTGAGCCTGTCC‑‑CTGGCCAGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCACCGCGCAAGTGCGCGTAGAAACCCTGCACCTGCAGCCACTGGCCATCAGCAGTGAGCTCAGCGGCCGTATCCTCGCGCCACGCAc                         <  1:569627/150‑1 (MQ=255)                                                                                                                                  cTTGCTGAGCCTGTCC‑‑CTGGCCGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCACCGCGCAAGTGCGCGTAGAAACCCTGCAACTGCAGCCACTGGCCATCAGCAGTGAACTCAGCGGCCGTATCCTCGCGCCACGCAccgc                      >  2:586559/1‑150 (MQ=255)                                                                                                                                   ttGCTGAGCCTGTCC‑‑CTGGCCGGCTGCAGCGACAGCGCCGAgccagacgaaccggctcagcaaggccatgagcgccaacgggagcaggcacggggagagggtagtaggcatgcggatcttccgatgatgaccgtgtatatgctaaggcag                     <  1:221614‑M2/150‑110 (MQ=255)                                                                                                                                       tGAGCCTGTCC‑‑CTGGCCGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCACCGCGCAAGTGCGCGTAGAAACCCTGCAACTGCAGCCACTGGCCATCAGCAGTGAACTCAGCGGCCGTATCCTCGCGCCACGCACCGCCGAAg                 <  1:586559/150‑1 (MQ=255)                                                                                                                                        gAGCCTGTCC‑‑CTGGCCGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCACCGCGCAAGTGCGCGTAGAAACCCTGCAACTGCAGCCACTGGCCATCAGCAGTGAACTCAGCGGCCGTATCCTCGCGCCACGCACCGCCGAAgt                <  1:545897/150‑1 (MQ=255)                                                                                                                                           ccTGTCC‑‑CTGGCCGGCTGCAGCGACAGCGCCGAgccagggacaggctcagcaaggccatgagcgccaacgggcgcaggcacggggagagggtagtaggcatgcggatcttccgatgatgaccgtgtatatgctaaggcagacgctgcctg             <  2:306523‑M2/150‑118 (MQ=255)                                                                                                                                              gTCC‑‑CTGGCCGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCACCGCGCAAGTGCGCGTAGAAACCCTGCAACTGCAGCCACTGGCCATCAGCAGTGAACTCAGCGGCCGTATCCTCGCGCCACGCACCGCCGAAgtgcgtgc          <  2:410299/150‑1 (MQ=255)                                                                                                                                                 c‑‑cTGGCCGGCTGCAGCGACAGCGCCGAgccagggacaggctcagcaaggccatgagcgccaacgggcgcaggcacggggagagggta                                                                      <  2:323154‑M2/87‑61 (MQ=255)                                                                                                                                                 c‑‑cTGGCCGGCTGCAGCGACAGCGCCGAgccagggacaggctcagcaaggccatgagcgccaacgggcgcaggcacggggagagggta                                                                      >  1:323154‑M2/1‑27 (MQ=255)                                                                                                                                                 c‑‑cTGGCCGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCACCGCGCAAGTGCGCGTAGAAACCCTGCAACTGCAg                                                                           <  1:44906/82‑1 (MQ=255)                                                                                                                                                 c‑‑cTGGCCGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCACCGCGCAAGTGCGCGTAGAAACCCTGCAACTGCAg                                                                           >  2:44906/1‑82 (MQ=255)                                                                                                                                                 c‑‑cTGGCCGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCACCGCGCAAGTGCGCGTAGAAACCCTGCAACTGCAGCCACTGGCCATCAGCAGTGAACTCAGCGGCCGTATCCTCGCGCCACGCACCGCCGAACtgcgtgcgag       >  2:191238/1‑148 (MQ=255)                                                                                                                                                        ccGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCACCGCGCAAGTGCGCGTAGAAACCCTGCAACTGCAGCCACTGGCCATCAGCAGTGAACTCAGCGGCCGTATCCTCGCGCCACGCACCGCCGAAGTGCGTGCGCGGGTCg  >  1:535420/1‑150 (MQ=255)                                                                                                                                                        |                                                                                                                                                      TTCACACTCGCCCTACAGGTATTAACAGCCGCCCAGGCAGCGTCTGCCTTAGCATATACACGGTCATCATCGGAAGATCCGCATGCCTACTACCCTCTCCCCGTGCCTGCGCCCGTTGGCGCTCATGGCCTTGCTGAGCCTGTCC‑‑CTGGCCGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCACCGCGCAAGTGCGCGTAGAAACCCTGCAACTGCAGCCACTGGCCATCAGCAGTGAACTCAGCGGCCGTATCCTCGCGCCACGCACCGCCGAAGTGCGTGCGCGGGTCG  >  NC_002947/3914994‑3915292

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.