New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3915143	36 (1.560)	4 (0.180)	4/240	NT	10.1%	coding (68/1176 nt)	PP_3455	multidrug RND transporter membrane fusion protein
	?	NC_002947	= 3915164	37 (1.670)					coding (89/1176 nt)	PP_3455	multidrug RND transporter membrane fusion protein

CCCAGGCAGCGTCTGCCTTAGCATATACACGGTCATCATCGGAAGATCCGCATGCCTACTACCCTCTCCCCGTGCCTGCGCCCGTTGGCGCTCATGGCCTTGCTGAGCCTGTCCCTGGCCGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCACCGCGCAAGTGCGCGTAGAAACCCTGCAACTGCAGCCACTGGCCATCAGCAGTGAACTCAGCGGCCGTATCCTCGCGCCACGCACCGCCGAAGTGCGTGCGCGGGTCGCAGGCGTGGTGC  >  NC_002947/3915025‑3915304                                                                                                                                            |                                                                                                                                             cccAGGCAGCGTCTGCCTTAGCATATACACGGTCATCATCGGAAGATCCGCATGCCTACTACCCTCTCCCCGTGCCTGCGCCCGTTGGCGCTCATGGCCTTGCTGAGCCTGTCCCTGGCCGGCTGCAGCGACAGCGCCGAGCCAGACGaa                                                                                                                                    <  1:132003/150‑1 (MQ=255)      gCAGCGTCTGCCTTAGCATATACACGGTCATCATCGGAAGATCCGCATGCCTACTACCCTCTCCCCGTGCCTGCGCCCGTTGGCGCTCATGGCCTTGCTGAGCCTGTCCCTGGCCGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGc                                                                                                                               <  1:364547/150‑1 (MQ=255)           gTCTGCCTTAGCATATACACGGTCATCATCGGAAGATCCGCATGCCTACTACCCTCTCCCCGTGCCTGCGCCCGTTGGCGCTCATGGCCTTGCTGAGCCTGTCCCTGGCCGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCa                                                                                                                          >  1:151762/1‑150 (MQ=255)            tCTGCCTTAGCATATACACGGTCACCATCGGAAGATCCGCATGCCTACTACCCTCTCCCCGTGCCTGCGCCCGTTGGCGCTCATGGCCTTGCTGAGCCTGTCCCTGGCCGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCAc                                                                                                                         >  1:545496/1‑150 (MQ=255)                  ttAGCATATACACGGTCATCATCGGAAGATCCGCATGCCTACTACCCTCTCCCCGTGCCTGCGCCCGTTGGCGCTCATGGCCTTGCTGAGCCTGTCCCTGGCCGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCACCGCGCa                                                                                                                   >  1:90959/1‑150 (MQ=255)                     gCATATACACGGTCATCATCGGAAGATCCGCATGCCTACTACCCTCTCCCCGTGCCTGCGCCCGTTGGCGCTCATGGCCTTGCTGAGCCTGTCCCTGGCCGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCACCGCGCAAGt                                                                                                                <  2:56152/150‑1 (MQ=255)                      cATATACACGGTCATCATCGGAAGATCCGCATGCCTACTACCCTCTCCCCGTGCCTGCGCCCGTTGGCGCTAATGGTCTGGCTGAGCCTGTCCCTGGACGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCACCGCGCAAGTg                                                                                                               >  1:598973/1‑150 (MQ=255)                         ataCACGGTCATCATCGGAAGATCCGCATGCCTACTACCCTCTCCCCGTGCCTGCGCCCGTTGGCGCTCATGGCCTTGCTGAGCCTGTCCCTGGCCGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCACCGCGCAAGTgcgc                                                                                                            <  1:130154/150‑1 (MQ=255)                            cacGGTCATCATCGGAAGATCCGCATGCCTACTACCCTCTCCCCGTGCCTGCGCCCGTTGGCGCTCATGGCCTTGCTGAGCCTGTCCCTGGCCGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCACCGCGCAAGTGCGCGTa                                                                                                         >  1:71978/1‑150 (MQ=255)                                      atcGGAAGATCCGCATGCCTACTACCCTCTCCCCGTGCCTGCGCCCGTTGGCGCTCATGGCCTTGCTGAGCCTGTCCCTGGCCGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCACCGCGCAAGTGCGCGTAGAAACCCTGc                                                                                               >  2:81818/1‑150 (MQ=255)                                       tcGGAAGATCCGCATGCCTACTACCCTCTCCCCGTGCCTGCGCCCGTTGGCGCTCATGGCCTTGCTGAGCCTGTCCCTGGCCGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCACCGCGCAAGTgcgc                                                                                                            >  2:71276/1‑136 (MQ=255)                                       tcGGAAGATCCGCATGCCTACTACCCTCTCCCCGTGCCTGCGCCCGTTGGCGCTCATGGCCTTGCTGAGCCTGTCCCTGGCCGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCACCGCGCAAGTgcgc                                                                                                            <  1:71276/136‑1 (MQ=255)                                                  gCATGCCTACTACCCTCTCCCCGTGCCTGCGCCCGTTGGCGCTCATGGCCTTGCTGAGCCTGTCCCTGGCCGGCTGCCGTGGCCGACCAGAGCCAGACGAACAGGCCCCCACCGCGCAAGTGCGCGTAGAAACCCTGCAACTGCAGCCAc                                                                                   >  1:320116/1‑150 (MQ=255)                                                        ctactaCCCTCTCCCCGTGCCTGCGCCCGTTGGCGCTCATGGCCTTGCTGAGCCTGTCCCTGGCCGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCACCGCGCACTTGcgcggtgggg                                                                                                     >  2:494065/1‑120 (MQ=255)                                                        ctactaCCCTCTCCCCGTGCCTGCGCCCGTTGGCGCTCATGGCCTTGCTGAGCCTGTCCCTGGCCGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCACCGCGCACTTGcgcggtgggg                                                                                                     <  1:494065/126‑7 (MQ=255)                                                                ctctCCCCGTGCCTGCGCCCGTTGGCGCTCATGGCCTTGCTGAGCCTGTCCCTGGCCGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCACCGCGCAAGTGCGCGTAGAAACCCTGCAACTGCAGCCACTGGCCATCAGCAGt                                                                     >  2:68763/1‑150 (MQ=255)                                                                      ccGTGCCTGCGCCCGTTGGCGCTCATGGCCTTGCTGAGCCTGTCCCTGGCCGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCACCGCGCAAGTGCGCGTAGAAACCCTGCAACTGCAGCCACTGGCCATCAGCAGTGAACTc                                                               >  1:410299/1‑150 (MQ=255)                                                                      ccGTGCCTGCGCCCGTTGGCGCTCATGGCCTTGCTGAGCCTGTCCCTGGCCGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCACCGCGCAAGTGCGCGTAAACAGTCTGCAACTGCAGCCACTGGCCATCAGCAGTGAACTc                                                               >  1:436616/1‑150 (MQ=255)                                                                         tGCCTGCGCCCGTTGGCGCTCATGGCCTTGCTGAGCCTGTCCCTGGCCGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCACCGCGCAAGTGCGCGTAGAAACCCTGCAACTGCAGCCACTGGCCATCAGCAGTGAACTCAGc                                                            <  2:151762/150‑1 (MQ=255)                                                                           ccTGCGCCCGTTGGCGCTCATGGCCTTGCTGAGCCTGTCCCTGGCCGGCTGCAGCGACATCGCCGAGCCAGACGAACAGGCCCCCACCGCGCAAGTGCGCGTAGAAACCCTGCAACTGCAGCCACTGGCCATCAGCAGTGAACTCAGCgg                                                          <  2:545496/150‑1 (MQ=255)                                                                                gcCCGTTGGCGCTCATGGCCTTGCTGAGCCTGTCCCTGGCCGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCACCGCGCAAGTGCGCGTAGAAACCCTGCAACTGCAGCCACTGGCCATCAGCAGTGAACTCAGCGGCCGTa                                                     >  1:584119/1‑150 (MQ=255)                                                                                gcCCGTTGGCGCTCATGGCCTTGCTGAGCCTGTCCCTGGCCGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCACCGCGCAAGTGCGCGTAGAAACCCTGCAACTGCAGCCACTGGCCATCAGCAGTGAACTCAGCGGCCGTa                                                     >  1:384063/1‑150 (MQ=255)                                                                                  ccGTTGGCGCTCATGGCCTTGCTGAGCCTGTCCCTGGCCGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCACCGCGCAAGTGCGCGTAGAAACCCTGCAACTGCAGCCACTGGCCATCAGCAGTGAACTCAGCGGCCGTATc                                                   >  2:59115/1‑150 (MQ=255)                                                                                   cGTTGGCGCTCATGGCCTTGCTGAGCCTGTCCCTGGCCGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCACCGCGCAAGTGCGCGTAGAAACCCTGCAACTGCAGCCACTGGCCATCAGCAGTGAACTCAGCGGCCGTATcc                                                  >  2:532949/1‑150 (MQ=255)                                                                                     ttGGCGCTCATGGCCTTGCTGAGCCTGTCCCTGGCCGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCACCGCGCAAGTGCGCGTAGAAACCCTGCAACTGCAGCCACTGGCCATCAGCAGTGAACTCAGCGGCCGTATCCTc                                                <  1:81818/150‑1 (MQ=255)                                                                                         cgcTCATGGCCTTGCTGAGCCTGTCCCTGGCCGGCTGCAGCGACAGCGCCGAGCCCGCCGAACAGGCCCCCACCGCGCAAGTGCGCGTAGAAACCCTGCAACTGCAGCCACTGGCCATCAGCAGTGAACTCAGCGGCCGTATCCTCgcgc                                            >  2:545897/1‑150 (MQ=255)                                                                                            tCATGGCCTTGCTGAGCCTGTCCCTGGCCGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCACCGCGCAAGTGCGCGTAGAAACCCTGCAACTGCAGCCACTGGCCATCAGCAGTGAACTCAGCGGCCGTATCCTCGCGCCAc                                         >  1:27357/1‑150 (MQ=255)                                                                                              aTGGCCTTGCTGAGCCTGTCCCTGGCCGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCACCGCGCAAGTGCGCGTAGAAACCCTGCAACTGCAGCCACTGGCCATCAGCAGTGAACTGAGCGGCCGTATCCTCGCGCCACGc                                       >  1:473243/1‑150 (MQ=255)                                                                                                ggCCTTGCTGAGCCTGTCCCTGGCCAGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCACCGCGCAAGTGCGCGTAGAAACCCTGCACCTGCAGCCACTGGCCATCAGCAGTGAGCTCAGCGGCCGTATCCTCGCGCCACGCAc                                     <  1:569627/150‑1 (MQ=255)                                                                                                   cTTGCTGAGCCTGTCCCTGGCCGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCACCGCGCAAGTGCGCGTAGAAACCCTGCAACTGCAGCCACTGGCCATCAGCAGTGAACTCAGCGGCCGTATCCTCGCGCCACGCAccgc                                  >  2:586559/1‑150 (MQ=255)                                                                                                    ttGCTGAGCCTGTCCCTGGCCGGCTGCAGCGACAGCGCCGAgccagacgaaccggctcagcaaggccatgagcgccaacgggagcaggcacggggagagggtagtaggcatgcggatcttccgatgatgaccgtgtatatgctaaggcag                                 <  1:221614‑M2/150‑110 (MQ=255)                                                                                                        tGAGCCTGTCCCTGGCCGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCACCGCGCAAGTGCGCGTAGAAACCCTGCAACTGCAGCCACTGGCCATCAGCAGTGAACTCAGCGGCCGTATCCTCGCGCCACGCACCGCCGAAg                             <  1:586559/150‑1 (MQ=255)                                                                                                         gAGCCTGTCCCTGGCCGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCACCGCGCAAGTGCGCGTAGAAACCCTGCAACTGCAGCCACTGGCCATCAGCAGTGAACTCAGCGGCCGTATCCTCGCGCCACGCACCGCCGAAgt                            <  1:545897/150‑1 (MQ=255)                                                                                                            ccTGTCCCTGGCCGGCTGCAGCGACAGCGCCGAgccagggacaggctcagcaaggccatgagcgccaacgggcgcaggcacggggagagggtagtaggcatgcggatcttccgatgatgaccgtgtatatgctaaggcagacgctgcctg                         <  2:306523‑M2/150‑118 (MQ=255)                                                                                                               gTCCCTGGCCGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCACCGCGCAAGTGCGCGTAGAAACCCTGCAACTGCAGCCACTGGCCATCAGCAGTGAACTCAGCGGCCGTATCCTCGCGCCACGCACCGCCGAAgtgcgtgc                      <  2:410299/150‑1 (MQ=255)                                                                                                                  ccTGGCCGGCTGCAGCGACAGCGCCGAgccagggacaggctcagcaaggccatgagcgccaacgggcgcaggcacggggagagggta                                                                                  <  2:323154‑M2/87‑61 (MQ=255)                                                                                                                  ccTGGCCGGCTGCAGCGACAGCGCCGAgccagggacaggctcagcaaggccatgagcgccaacgggcgcaggcacggggagagggta                                                                                  >  1:323154‑M2/1‑27 (MQ=255)                                                                                                                  ccTGGCCGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCACCGCGCAAGTGCGCGTAGAAACCCTGCAACTGCAg                                                                                       <  1:44906/82‑1 (MQ=255)                                                                                                                  ccTGGCCGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCACCGCGCAAGTGCGCGTAGAAACCCTGCAACTGCAg                                                                                       >  2:44906/1‑82 (MQ=255)                                                                                                                  ccTGGCCGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCACCGCGCAAGTGCGCGTAGAAACCCTGCAACTGCAGCCACTGGCCATCAGCAGTGAACTCAGCGGCCGTATCCTCGCGCCACGCACCGCCGAACtgcgtgcgag                   >  2:191238/1‑148 (MQ=255)                                                                                                                       ccGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCACCGCGCAAGTGCGCGTAGAAACCCTGCAACTGCAGCCACTGGCCATCAGCAGTGAACTCAGCGGCCGTATCCTCGCGCCACGCACCGCCGAAGTGCGTGCGCGGGTCg              >  1:535420/1‑150 (MQ=255)                                                                                                                                   aCAGCGCCGAGCCAGACGAACAGGCCCCCACCGCGCAAGTGCGCGTAGAAACCCTGCAACTGCAGCCACTGGCCATCAGCAGTGAACTCAGCGGCCGTATCCTCGCGCCACGCACCGCCGAAGTGCGTGCGCGGGTCGCAGGCGTGGTGc  >  2:359171/1‑150 (MQ=255)                                                                                                                                            |                                                                                                                                             CCCAGGCAGCGTCTGCCTTAGCATATACACGGTCATCATCGGAAGATCCGCATGCCTACTACCCTCTCCCCGTGCCTGCGCCCGTTGGCGCTCATGGCCTTGCTGAGCCTGTCCCTGGCCGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCACCGCGCAAGTGCGCGTAGAAACCCTGCAACTGCAGCCACTGGCCATCAGCAGTGAACTCAGCGGCCGTATCCTCGCGCCACGCACCGCCGAAGTGCGTGCGCGGGTCGCAGGCGTGGTGC  >  NC_002947/3915025‑3915304

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.