New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5093159 =	31 (1.340)	4 (0.180)	4/236	NT	11.9%	coding (511/981 nt)	PP_4482	AraC family transcriptional regulator
	?	NC_002947	5093232 =	30 (1.370)					coding (438/981 nt)	PP_4482	AraC family transcriptional regulator

GTTGGCTTCCATCAGCAACACGGCCTGAGTCAGCTTGGGGTGACTCGAGCCCAGGCGGTTCTGCAGCGGAATACGCTGGCGCTCGCCACCCTCGCGGATGCGCTCTACCACCAGCTCTTCCGACACTGCCCCGGCCAGCTCCGCCCCGTGATCGCGCGCCAGCACCGCCAGCAGCAGGTCGGTCACGGCCATACCGCCGCAGGCGGTCAGTCGGTCGCGATCCCAGTCGAACAGGTGGCTGGTGGCAATCACCTTGGGGAAGCGTTCGGCAAAGTCATCCTGCCAGCGCCAGTGCA  >  NC_002947/5093010‑5093305                                                                                                                                                      |                                                                                                                                                   gcctgatcggtggcctgtcggccggggtgtatccgctggcaatgctgggcctgctcgatgggtaccgggcagccgtgcactggcgctggcaggatgactttgccgaacgcttccccaaggtgattgccaccagccacctgttcgactggg                                                                                                                                                    >  1:484283‑M1/150‑150 (MQ=255)  ttGGCTTCCATCAGCAACACGGCCTGAGTCAGCTTGGGGTGACTCGAGCCCAGGCGGTTCTGCAGCGGAATACGCTGGCGCTCGCCACCCTCGCGGATGCGCTCTACCACCAGCTCTTCCGACACTGCCCCGGCCAGCTCCGCCCCGTGa                                                                                                                                                   <  2:122626/150‑1 (MQ=255)   tGGCTTCCATCAGCAACACGGCCTGAGTCAGCTTGGGGTGACTCGAGCCCAGGCGGTTCTGCAGCGGAATACGCTGGCGCTCGCCACCCTCGCGGATGCGCTCTACCACCAGCTCTTCCGACACTGCCCCGGCCAGCTCCGCCCCGTGAt                                                                                                                                                  <  2:540668/150‑1 (MQ=255)    tgatcggtggcctgtcggccggggtgtatccgctggcaatgctgggcctgctcgatgggtaccgggcagccgtgcactggcgctggcaggatgactttgccgaacgcttccccaaggtgattgccaccagccacctgttcgactggGATc                                                                                                                                                 <  1:136397‑M1/4‑1 (MQ=255)        tCCATCAGCAACACGGCCTGAGTCAGCTTGGGGTGACTCGAGCCCAGGCGGTTCTGCAGCGGAATACGCTGGCGCTCGCCACCCTCGCGGATGCGCTCTACCACCAGCTCTTCCGACACTGCCCCGGCCAGCTCCGCCCCGTGATcgcgc                                                                                                                                             <  1:249657/150‑1 (MQ=255)           aTCAGCAACACGGCCTGAGTCAGCTTGGGGTGACTCGAGCCCAGGCGGTTCTGCAGCGGAATACGCTGGCGCTCGCCACCCTCGCGGATGCGCTCTACCACCAGCTCTTCCGACACTGCCCCGGCCAGCTCCGCCCCGTGATCGCGCGcc                                                                                                                                          >  2:261874/1‑150 (MQ=255)           aTCAGCAACACGGCCTGAGTCAGCTTGGGGTGACTCGAGCCCAGGCGGTTCTGCAGCGGAATACGCTGGCGCTCGCCACCCTCGCGGATGCGCTCTACCACCAGCTCTTCCGACACTGCCCCGGCCAGCTCCGCCCCGTGATCGCGCGcc                                                                                                                                          >  1:364733/1‑150 (MQ=255)                    acGGCCTGAGTCAGCTTGGGGTGACTCGAGCCCAGGCGGTTCTGCAGCGGAATACGCTGGCGCTCGCCACCCTCGCGGATGCGCTCTACCACCAGCTCTTCCGACACTGCCCCGGCCAGCTCCGCCCCGTGATCGCGCGCCAGCACCGcc                                                                                                                                 >  1:63620/1‑150 (MQ=255)                          tGAGTCAGCTTGGGGTGACTCGAGCCCAGGCGGTTCTGCAGCGGAATACGCTGGCGCTCGCCACCCTCGCGGATGCGCTCTACCACCAGCTCTTCCGACACTGCCCCGGCCAGCTCCGCCCCGTGATCGCGCGCCAGCACCGCcagcagc                                                                                                                           <  1:221958/150‑1 (MQ=255)                                               gggcctgctcgatgggtaccgggcagaagctaactggcgctggcaggatgactttgccgaacgcttccccaaggtgattgccaccagccacctgttcgactggGATCGCGCGCCAGCACCGCCAGCAGCAGGTCGGTCACGGCCATAccg                                                                                                      <  1:173251‑M1/47‑1 (MQ=255)                                                     gctcgatgggtaccgggcagccgtgaactggcgctggcaggatgtccgatcctaacgcgtccccaaggtgattgccaccagccacctgttcgactggGATCGCGCGCCAGCACCGCCAGCAGCAGGTCGGTCACGGCCATACCGCCGCAg                                                                                                >  2:173251‑M1/98‑150 (MQ=255)                                                     aGGCGGTTCTGCAGCGGAATACGCTGGCGCTCGCCACCCTCGCGGATGCGCTCTACCACCAGCTCTTCCGACACTGCCCCGGCCAGCTCCGCCCCGTGATCGCGCGCCAGCACCGCCAGCAGCAGGTCGGTCACGGCCATACCGCCGCAg                                                                                                >  1:328844/1‑150 (MQ=255)                                                         gatgggtaccgggcagccgtgcactggcgctggcaggatgactttgccgaacgcttccccaaggtgattgccaccagccacctgttcgactggGATCGCGCGCCAGCACCGCCAGCAGCAGGTCGGTCACGGCCATACCGCCGCAGGCgg                                                                                            <  1:378835‑M1/57‑1 (MQ=255)                                                          gTTCTGCAGCGGCATACGCTGGCGCTCGCCACCCTCGCGGATGCGCTCTACCACCAGCTCTTCCGACACTGCCCCGGCCAGCTCCGCCCCGTGATCGCCCGCCAGCACCGCCAGCAGCAGGTCGGTCACGGCCATTCCGCCGCAGGCGGt                                                                                           <  1:518559/150‑1 (MQ=255)                                                                 aGCGGAATACGCTGGCGCTCGCCACCCTCGCGGATGCGCTCTACCACCAGCTCTTCCGACACTGCCCCGGCCAGCTCCGCCCCGTGATCGCGCGCCAGCACCGCCAGCAGCAGGTCGGTCACGGCCATACCGCCGCAGGCGGTCAgtcgg                                                                                    >  1:314936/1‑150 (MQ=255)                                                                     gAATACGCTGGCGCTCGCCACCCTCGCGGATGCGCTCTACCACCAGCTCTTCCGACACTGCCCCGGCCAGCTCCGCCCCGTGATCGCGCGCCAGCACCGCCAGCAGCAGGTCGGTCACGGCCATACCGCCGCAGGCGGTCAgtcggtc                                                                                  >  2:124907/1‑148 (MQ=255)                                                                     gAATACGCTGGCGCTCGCCACCCTCGCGGATGCGCTCTACCACCAGCTCTTCCGACACTGCCCCGGCCAGCTCCGCCCCGTGATCGCGCGCCAGCACCGCCAGCAGCAGGTCGGTCACGGCCATACCGCCGCAGGCGGTCAgtcggtc                                                                                  <  1:124907/148‑1 (MQ=255)                                                                         ccgtgcactggcgctggcaggatgactttgccgaacgcttccccaaggtgattgccaccagccacctgttcgactggGATCGCGCGCCAGCACCGCCAGCAGCAGGTCGGTCACGGCCATACCGCCGCAGGCGGTCAGTCGGTCGCGATc                                                                            >  2:378835‑M1/78‑150 (MQ=255)                                                                         aCGCTGGCGCTCGCCACCCTCGCGGATGCGCTCTACCACCAGCTCTTCCGACACTGCCCCGGCCAGCTCCGCCCCGTGATCGCGCGCCAGCACCGCCAGCAGCAGGTCGGTCACGGCCATACCGCCGCAGGCGGTCAGTCGGTCGCGATc                                                                            <  2:364733/150‑1 (MQ=255)                                                                             tGGCGCTCGCCACCCTCGCGGATGCGCTCTACCACCAGCTCTTCCGACACTGCCCCGGCCAGCTCCGCCCCGTGATCGCGCGCCAGCACCGCCAGCAGCAGGTCGGTCACGGCCATACCGCCGCAGGCGGTCAGTCGGTCGCGATCCCAg                                                                        >  2:192306/1‑150 (MQ=255)                                                                                   tcacgaCCGTCACGGATTCGCTCTACCACCAGCTCTTCCGACACTGCCCCGGCCAGCTCCGCCCCGTGATCGCGCGCCAGCACCGCCAGCAGCAGGTCGGTCACGGCCATACCGCCGCAGGCGGTCAGTCGGTCGCGATCCCAGTCGAAc                                                                  >  2:154570/6‑150 (MQ=255)                                                                                       cACCCTCGCGGATGCGCTCTACCACCAGCTCTTCCGACACTGCCCCGGCCAGCTCCGCCCCGTGATCGCGCGCCAGCACCGCCAGCAGCAGGTCGGTCACGGCCATACCGCCGCAGGCGGTCAGTCGGTCGCGATCCCAGTCGAACAGGt                                                              <  1:114709/150‑1 (MQ=255)                                                                                            tCGCGGATGCGCTCTACCACCAGCTCTTCCGACACTGCCCCGGCCAGCTCCGCCCCGTGATCGCGCGCCAGCACCGCCAGCAGCAGGTCGGTCACGGCCATACCGCCGCAGGCGGTCAGTCGGTCGCGATCCCAGTCGAACAGGTGGCtg                                                         >  2:36056/1‑150 (MQ=255)                                                                                                   tGCGCTCTACCACCAGCTCTTCCGACACTGCCCCCGCCAGCTCCGCCCCGTGATCGCGCGCCAGCACCGCCAGCAGCAGGTCGGTCACGGCCATACCGCCGCAGGCGGTCAGTCGGTCGCGATCCCAGTCGAACAGGTGGCTGGTGGCaa                                                  <  1:36056/150‑1 (MQ=255)                                                                                                              accaGCTCTTCCGACACTGCCCCGGCCAGCTCCGCCCCGTGATCGCGCGCCAGCACCGCCAGCAGCAGGTCGGTCACGGCCATACCGCCGCAGGCGGTCAGTCGGTCGCGATCCCAGTCGAACAGGTGGCTGGTGGCAATCACCTTgggg                                       >  1:134747/1‑150 (MQ=255)                                                                                                               ccaGCTCTTCCGACACTGCCCCGGCCAGCTCCGCCCCGTGATCGAGCGCCAGCACCGCCAGCAGCAGGTCGGTCACGGCCATACCGCCGCAGGCGGTCAGTCGGTCGCGATCCCAGTCGAACAGGTGGCTGGTGGCAATCACCTTGGGGa                                      >  1:275173/1‑150 (MQ=255)                                                                                                                caGCTCTTCCGACACTGCCCCGGCCAGCTCCGCCCCGTGATCGCGCGCCAGCACCGCCAGCAGCAGGTCGGTCACGGCCATACCGCCGCAGGCGGTCAGTCGGTCGCGATCCCAGTCGAACAGGTGGCTGGTGGCAATCACCTTGGGGaa                                     <  2:314936/150‑1 (MQ=255)                                                                                                                  gCTCTTCCGACACTGCCCCGGCCAGCTCCGCCCCGTGATCGCGCGCCAGCACCGCCAGCAGCAGGTCGGTCACGGCCATACCGCCGCAGGCGGTCAGTCGGTCGCGATCCCAGTCGAACAGGTGGCTGGTGGCAATCACCTTGGGGAAGc                                   <  1:192306/150‑1 (MQ=255)                                                                                                                            cacTGCCCCGGCCAGCTCCGCCCCGTGATCGCGCCCCAGCACCGCCAGCAGCAGGTCGGTCACGGCCATACCGCCGCAGGCGGTCAGTCGGTCGCGATCCCAGTCGAACAGGTGGCTGGTGGCAATCACCTTGGGGAAGCGTTCGGCaaa                         <  2:526924/150‑1 (MQ=255)                                                                                                                            aacTGCCCCGGCCAGCTCCGCCCCGTGATCGCGCGCCAGCACCGCCAGCAGCAGGTCGGTCACGGCCATACCGCAGCAGGCGGTCAGTCGGTCGCGATCCCAGTCGAACACGTGGCTGGTGGCACTCACCTTGGGGAAGCGTTCGGCaaa                         <  2:293957/149‑1 (MQ=255)                                                                                                                             acTGCCCCGGCCAGCTCCGCCCCGTGATCGCGCGCCAGCACCGCCAGCAGCAGGTCGGTCACGGCCATACCGCCGCAGGCGGTCAGTCGGTCGCGATCCCAGTCGAACAGGTGGCTGGTGGCAATCACCTTGGGGAAGCGTTCGACAAAg                        <  1:70196/150‑1 (MQ=255)                                                                                                                               tGCCCCGGCCAGCTCCGCCCCGTGATCGCGCGCCAGCACCGCCAGCAGCAGGTCGGTCACGGCCATACCGCCGCAGGCGGTCAGTCGGTCGCGATcc                                                                           >  2:187573/1‑97 (MQ=255)                                                                                                                               tGCCCCGGCCAGCTCCGCCCCGTGATCGCGCGCCAGCACCGCCAGCAGCAGGTCGGTCACGGCCATACCGCCGCAGGCGGTCAGTCGGTCGCGATcc                                                                           <  1:187573/97‑1 (MQ=255)                                                                                                                                 ccccGGCCAGATCAGCCCCGTTGTTACCGTCCAGCGCCTTCAGCAGCAGGTCGGTCACGGCCATACCGCCGCAGGCGGTCAGTCGGTGGCGATAGATCTCGGAGGTGGCGGTGGTGTTAATCACCTTGGAGAAGCGTTCGGCAAAGTCAt                    >  2:596071/1‑150 (MQ=255)                                                                                                                                      gCCAGCTCCGCCCCGTGATCGCGCGCCAGCACCGCCAGCAGCAGGTCGGTCACGGCCATACCGCCGCAGGCGGTCAGTCGGTCGCGATCCCAGTCGAACAGGTGGCTGGTGGCAATCACCTTGGGGAAGCGTTCGGCAAAGTCATCCTGc               <  2:63620/150‑1 (MQ=255)                                                                                                                                        cAGCTCCGCCCCGCGACCGAGCGCCTGCACCGCCAGCAGCAGGTCGGTCACGGCCATACCGCTTCCTGCGGGCAGTCGGTCGCGATCCCAGTCGAACAGGTGGCTGGTGGCAATCACCTTGGGGAAGCGTTCGGCAAAGTCATCCTGCCa             <  1:11122/150‑1 (MQ=255)                                                                                                                                            tCCGCCCCGTGATCGCGCGCCAGCACCGCCAGCAGCAGGTCGGTCACGGCCATACCGCCGCAGGCGGTCAGTCGGTCGCGATCCCAGTCGAACAGGTGGCTGGTGGCAATCACCTTgg                                         >  2:440881/1‑118 (MQ=255)                                                                                                                                            tCCGCCCCGTGATCGCGCGCCAGCACCGCCAGCAGCAGGTCGGTCACGGCCATACCGCCGCAGGCGGTCAGTCGGTCGCGATCCCAGTCGAACAGGTGGCTGGTGGCAATCACCTTgg                                         <  1:440881/118‑1 (MQ=255)                                                                                                                                            tCCGCCCCGTGATCGCGCGCCAGCACCGCCAGCAGCAGGTCGGTCACGGCCATACCGCCGCAGGCGGTCAGTCGGTCGCGATCCCAGTCGAACAGGTGGCTGGTGGCAATCACCTTGGGGAAGCGTTCGGCAAAGTCATCCTGCCAgcgc         >  2:449128/1‑150 (MQ=255)                                                                                                                                                  ccGTGATCGCGCGCCAGCACCGCCAGCAGCAGGTCGGTCACGGCCATACCGCCGCAGGCGGTCAGTCGGTCGCGATCCCAGTCGAACAGGTGGCTGGTGGCAATCACCTTGGGGAAGCGTTCGGCAAAGTCATCCTGCCAGCGCCAGTGc   >  2:454346/1‑150 (MQ=255)                                                                                                                                                   cGTGATCGCGCGCCAGCACCGCCAGCAGCAGGTCGGTCACGGCCATACCGCCGCAGGCGGTCAGTCGGTCGCGATCCCAGTCGAACAGGTGGCTGGTGGCAATCACCTTGGGGAAGCGTTCGGCAAAGTCATCCTGCCAGCGCCAGTGCa  >  2:598655/1‑150 (MQ=255)                                                                                                                                                      |                                                                                                                                                   GTTGGCTTCCATCAGCAACACGGCCTGAGTCAGCTTGGGGTGACTCGAGCCCAGGCGGTTCTGCAGCGGAATACGCTGGCGCTCGCCACCCTCGCGGATGCGCTCTACCACCAGCTCTTCCGACACTGCCCCGGCCAGCTCCGCCCCGTGATCGCGCGCCAGCACCGCCAGCAGCAGGTCGGTCACGGCCATACCGCCGCAGGCGGTCAGTCGGTCGCGATCCCAGTCGAACAGGTGGCTGGTGGCAATCACCTTGGGGAAGCGTTCGGCAAAGTCATCCTGCCAGCGCCAGTGCA  >  NC_002947/5093010‑5093305

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.