New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5093159 =	31 (1.340)	4 (0.180)	4/236	NT	11.9%	coding (511/981 nt)	PP_4482	AraC family transcriptional regulator
	?	NC_002947	5093232 =	30 (1.370)					coding (438/981 nt)	PP_4482	AraC family transcriptional regulator

TGGCGCTCGCCACCCTCGCGGATGCGCTCTACCACCAGCTCTTCCGACACTGCCCCGGCCAGCTCCGCCCCGTGATCGCGCGCCAGCACCGCCAGCAGCAGGTCGGTCACGGCCATACCGCCGCAGGCGGTCAGTCGGTCGCGATCCCAGTCGAACAGGTGGCTGGTGGCAATCACCTTGGGGAAGCGTTCGGCAAAGTCATCCTGCCAGCGCCAGTGCACGGCTGCCCGGTACCCATCGAGCAGGCCCAGCATTGCCAGCGGATACACCCCGGCCGACAGGCCACCGATCAGGC  >  NC_002947/5093086‑5093380                                                                                                                                                   |                                                                                                                                                     tGGCGCTCGCCACCCTCGCGGATGCGCTCTACCACCAGCTCTTCCGACACTGCCCCGGCCAGCTCCGCCCCGTGATCGCGCGCCAGCACCGCCAGCAGCAGGTCGGTCACGGCCATACCGCCGCAGGCGGTCAGTCGGTCGCGATCCCAg                                                                                                                                                   >  2:192306/1‑150 (MQ=255)       tcacgaCCGTCACGGATTCGCTCTACCACCAGCTCTTCCGACACTGCCCCGGCCAGCTCCGCCCCGTGATCGCGCGCCAGCACCGCCAGCAGCAGGTCGGTCACGGCCATACCGCCGCAGGCGGTCAGTCGGTCGCGATCCCAGTCGAAc                                                                                                                                             >  2:154570/6‑150 (MQ=255)           cACCCTCGCGGATGCGCTCTACCACCAGCTCTTCCGACACTGCCCCGGCCAGCTCCGCCCCGTGATCGCGCGCCAGCACCGCCAGCAGCAGGTCGGTCACGGCCATACCGCCGCAGGCGGTCAGTCGGTCGCGATCCCAGTCGAACAGGt                                                                                                                                         <  1:114709/150‑1 (MQ=255)                tCGCGGATGCGCTCTACCACCAGCTCTTCCGACACTGCCCCGGCCAGCTCCGCCCCGTGATCGCGCGCCAGCACCGCCAGCAGCAGGTCGGTCACGGCCATACCGCCGCAGGCGGTCAGTCGGTCGCGATCCCAGTCGAACAGGTGGCtg                                                                                                                                    >  2:36056/1‑150 (MQ=255)                       tGCGCTCTACCACCAGCTCTTCCGACACTGCCCCCGCCAGCTCCGCCCCGTGATCGCGCGCCAGCACCGCCAGCAGCAGGTCGGTCACGGCCATACCGCCGCAGGCGGTCAGTCGGTCGCGATCCCAGTCGAACAGGTGGCTGGTGGCaa                                                                                                                             <  1:36056/150‑1 (MQ=255)                                  accaGCTCTTCCGACACTGCCCCGGCCAGCTCCGCCCCGTGATCGCGCGCCAGCACCGCCAGCAGCAGGTCGGTCACGGCCATACCGCCGCAGGCGGTCAGTCGGTCGCGATCCCAGTCGAACAGGTGGCTGGTGGCAATCACCTTgggg                                                                                                                  >  1:134747/1‑150 (MQ=255)                                   ccaGCTCTTCCGACACTGCCCCGGCCAGCTCCGCCCCGTGATCGAGCGCCAGCACCGCCAGCAGCAGGTCGGTCACGGCCATACCGCCGCAGGCGGTCAGTCGGTCGCGATCCCAGTCGAACAGGTGGCTGGTGGCAATCACCTTGGGGa                                                                                                                 >  1:275173/1‑150 (MQ=255)                                    caGCTCTTCCGACACTGCCCCGGCCAGCTCCGCCCCGTGATCGCGCGCCAGCACCGCCAGCAGCAGGTCGGTCACGGCCATACCGCCGCAGGCGGTCAGTCGGTCGCGATCCCAGTCGAACAGGTGGCTGGTGGCAATCACCTTGGGGaa                                                                                                                <  2:314936/150‑1 (MQ=255)                                      gCTCTTCCGACACTGCCCCGGCCAGCTCCGCCCCGTGATCGCGCGCCAGCACCGCCAGCAGCAGGTCGGTCACGGCCATACCGCCGCAGGCGGTCAGTCGGTCGCGATCCCAGTCGAACAGGTGGCTGGTGGCAATCACCTTGGGGAAGc                                                                                                              <  1:192306/150‑1 (MQ=255)                                                cacTGCCCCGGCCAGCTCCGCCCCGTGATCGCGCCCCAGCACCGCCAGCAGCAGGTCGGTCACGGCCATACCGCCGCAGGCGGTCAGTCGGTCGCGATCCCAGTCGAACAGGTGGCTGGTGGCAATCACCTTGGGGAAGCGTTCGGCaaa                                                                                                    <  2:526924/150‑1 (MQ=255)                                                aacTGCCCCGGCCAGCTCCGCCCCGTGATCGCGCGCCAGCACCGCCAGCAGCAGGTCGGTCACGGCCATACCGCAGCAGGCGGTCAGTCGGTCGCGATCCCAGTCGAACACGTGGCTGGTGGCACTCACCTTGGGGAAGCGTTCGGCaaa                                                                                                    <  2:293957/149‑1 (MQ=255)                                                 acTGCCCCGGCCAGCTCCGCCCCGTGATCGCGCGCCAGCACCGCCAGCAGCAGGTCGGTCACGGCCATACCGCCGCAGGCGGTCAGTCGGTCGCGATCCCAGTCGAACAGGTGGCTGGTGGCAATCACCTTGGGGAAGCGTTCGACAAAg                                                                                                   <  1:70196/150‑1 (MQ=255)                                                   tGCCCCGGCCAGCTCCGCCCCGTGATCGCGCGCCAGCACCGCCAGCAGCAGGTCGGTCACGGCCATACCGCCGCAGGCGGTCAGTCGGTCGCGATcc                                                                                                                                                      <  1:187573/97‑1 (MQ=255)                                                   tGCCCCGGCCAGCTCCGCCCCGTGATCGCGCGCCAGCACCGCCAGCAGCAGGTCGGTCACGGCCATACCGCCGCAGGCGGTCAGTCGGTCGCGATcc                                                                                                                                                      >  2:187573/1‑97 (MQ=255)                                                     ccccGGCCAGATCAGCCCCGTTGTTACCGTCCAGCGCCTTCAGCAGCAGGTCGGTCACGGCCATACCGCCGCAGGCGGTCAGTCGGTGGCGATAGATCTCGGAGGTGGCGGTGGTGTTAATCACCTTGGAGAAGCGTTCGGCAAAGTCAt                                                                                               >  2:596071/1‑150 (MQ=255)                                                          gCCAGCTCCGCCCCGTGATCGCGCGCCAGCACCGCCAGCAGCAGGTCGGTCACGGCCATACCGCCGCAGGCGGTCAGTCGGTCGCGATCCCAGTCGAACAGGTGGCTGGTGGCAATCACCTTGGGGAAGCGTTCGGCAAAGTCATCCTGc                                                                                          <  2:63620/150‑1 (MQ=255)                                                            cAGCTCCGCCCCGCGACCGAGCGCCTGCACCGCCAGCAGCAGGTCGGTCACGGCCATACCGCTTCCTGCGGGCAGTCGGTCGCGATCCCAGTCGAACAGGTGGCTGGTGGCAATCACCTTGGGGAAGCGTTCGGCAAAGTCATCCTGCCa                                                                                        <  1:11122/150‑1 (MQ=255)                                                                tCCGCCCCGTGATCGCGCGCCAGCACCGCCAGCAGCAGGTCGGTCACGGCCATACCGCCGCAGGCGGTCAGTCGGTCGCGATCCCAGTCGAACAGGTGGCTGGTGGCAATCACCTTgg                                                                                                                    <  1:440881/118‑1 (MQ=255)                                                                tCCGCCCCGTGATCGCGCGCCAGCACCGCCAGCAGCAGGTCGGTCACGGCCATACCGCCGCAGGCGGTCAGTCGGTCGCGATCCCAGTCGAACAGGTGGCTGGTGGCAATCACCTTgg                                                                                                                    >  2:440881/1‑118 (MQ=255)                                                                tCCGCCCCGTGATCGCGCGCCAGCACCGCCAGCAGCAGGTCGGTCACGGCCATACCGCCGCAGGCGGTCAGTCGGTCGCGATCCCAGTCGAACAGGTGGCTGGTGGCAATCACCTTGGGGAAGCGTTCGGCAAAGTCATCCTGCCAgcgc                                                                                    >  2:449128/1‑150 (MQ=255)                                                                      ccGTGATCGCGCGCCAGCACCGCCAGCAGCAGGTCGGTCACGGCCATACCGCCGCAGGCGGTCAGTCGGTCGCGATCCCAGTCGAACAGGTGGCTGGTGGCAATCACCTTGGGGAAGCGTTCGGCAAAGTCATCCTGCCAGCGCCAGTGc                                                                              >  2:454346/1‑150 (MQ=255)                                                                       cGTGATCGCGCGCCAGCACCGCCAGCAGCAGGTCGGTCACGGCCATACCGCCGCAGGCGGTCAGTCGGTCGCGATCCCAGTCGAACAGGTGGCTGGTGGCAATCACCTTGGGGAAGCGTTCGGCAAAGTCATCCTGCCAGCGCCAGTGCa                                                                             >  2:598655/1‑150 (MQ=255)                                                                          gatcgcgaccgactgaccgcctgcggcggtatggccgtgaccgacctgctgctggcggtgctggcgcgcgatcCCAGTCGAACAGGTGGCTGGTGGCAATCACCTTGGGGAAGCGTTCGGCAAAGTCATCCTGCCAGCGCCAGTGCACgg                                                                          >  2:378835‑M2/74‑150 (MQ=255)                                                                            TCGCGCGCCAGCACCGCCAGCAGCAGGTCGGTCACGGCCATACCGCCGCAGGCGGTCAGTCGGTCGCGATCCCAGTCGAACAGGTGGCTGGTGGCAATCACCTTGGGGAAGCGTTCGGCAAAGTCATCCTGCCAGCGCCAGTGCACGGCt                                                                        <  2:337580‑M1/150‑1 (MQ=255)                                                                                          ccgcctgcggcggtatggccgtgaccgacctgctgctggcggtgctggcgcgcgatcCCAGTCGAACAGGTGGCTGGTGGCAATCACCTTGGGGAAGCGTTCGGCAAAGTCATCCTGCCAGCGCCAGTGCACGGCTGCCCGGTACCCATc                                                          <  1:378835‑M2/93‑1 (MQ=255)                                                                                            ccAGCAGCAGGTCGGTCACGGCCATACCGCCGCAGGCGGTCAGTCGGTCGCGATCCCAGTCGAACAGGTGGCTGGTGGCAATCACCTTGGGGAAGCGTTCGGCAAAGTCATCCTGCCAGCGCCAGTGCACGGCTGCCCGGTACCCATCGa                                                        <  1:337580/150‑1 (MQ=255)                                                                                              ctgcggcggtatggccgtgaccgacctgctgctggcggtgctggcgcgcgatcCCAGTCGAACAGGTGGCTGGTGGCAATCACCTTGGGGACGCGTTAGGATCGGACATCCTGCCAGCGCCAGTTCACGGCTGCCCGGTACCCATCGAGc                                                      >  2:173251‑M2/54‑150 (MQ=255)                                                                                                 agcagGTCGGTCACGGCCATACCGCCGCAGGCGGTCAGTCGGTCGCGATCCCAGTCGAACAGGTGGCTGGTGGCAATCACCTTGGGGAAGCGTTCGGCAAAGTCATCCTGCCAGCGCCAGTGCACGGCTGCCCGGTACCCATCGAGCAgg                                                   <  1:154570/150‑1 (MQ=255)                                                                                                    cggtatggccgtgaccgacctgctgctggcggtgctggcgcgcgatcCCAGTCGAACAGGTGGCTGGTGGCAATCACCTTGGGGAAGCGTTCGGCAAAGTCATCCTGCCAGCGCCAGTTAGCTTCTGCCCGGTACCCATCGAGCAGGccc                                                <  1:173251‑M2/103‑1 (MQ=255)                                                                                                    agGTCGGTCACGGCCATACCGCCGCAGGCGGTCAGTCGGTCGCGATCCCAGTCGAACAGGTGGCTGGTGGCAATCACCTTGGGGAAGCGTTCGGCAAAGTCATCCTGCCAGCGCCAGTGCACGGCTGCCCGGTACCCATCGAGCAGGccc                                                <  2:520292/150‑1 (MQ=255)                                                                                                          gtcACGGCCATACCGCCGCAGGCGGTCAGTCGGTCGCGATCCCAGTCGAACAGGTGGCTGGTGGCAATCACCTTGGGGAAGCGTTCGGCAAAGTCATCCTGCCAGCGCCAGTGCACGGCTGCCCGGTACCCATCGAGCAGGCCCAGCAtt                                          >  1:448872/1‑150 (MQ=255)                                                                                                               ggCCATACCGCCGCAGGCGGTCAGTCGGTCGCGATCCCAGTCGAACAGGTGGCTGGTGGCAATCACCTTGGGGAAGCGTTCGGCaaa                                                                                                    >  2:86952/1‑87 (MQ=255)                                                                                                               ggCCATACCGCCGCAGGCGGTCAGTCGGTCGCGATCCCAGTCGAACAGGTGGCTGGTGGCAATCACCTTGGGGAAGCGTTCGGCaaa                                                                                                    <  1:86952/87‑1 (MQ=255)                                                                                                                gCCATACCGCCGCAGGCGGTCAGTCGGTCGCGATCCCAGTCGAACAGGTGGCTGGTGGCAATCACCTTGGGGAAGCGTTCGGCAAAGTCATCCTGCCAGCGCCAGTGCACGGCTGCCCGGTACCCATCGAGCAGGCCCAGCATTGCCAGc                                    <  2:134747/150‑1 (MQ=255)                                                                                                                        gccgcAGGCGGTCAGTCGGTCGCGATCCCAGTCGAACAGGTGGCTGGTGGCAATCACCTTGGGGAAGCGTTCGGCAAAGTCATCCTGCCAGCGCCAGTGCACGGCTGCCCGGTACCCATCGAGCAGGCCCAGCATTGCCAGCGGATacac                            <  2:448872/150‑1 (MQ=255)                                                                                                                                   gcAGTCGGTCGCGATCCGAGTCGCACAGGCGGCTGGTGGCAATCACCTTGGGGAAGCGTTCGGCAAAGTCTTCCTGCCAGCGCCAGTGCACGGCTGCCCGGTACCCATCGAGCAGGCCCAGCATTGCCAGCGGATACACCCCGGCCGACa                 <  2:340376/149‑1 (MQ=255)                                                                                                                                     aGTCGGTCGCGATCCCAGTCGAACAGGTGGCTGGTGGCAATCACCTTGGGGAAGCGTTCGGCAAAGTCATCCTGCCAGCGCCAGTGCACGGCTGCCCGGTACCCa                                                            >  2:101895/1‑105 (MQ=255)                                                                                                                                     aGTCGGTCGCGATCCCAGTCGAACAGGTGGCTGGTGGCAATCACCTTGGGGAAGCGTTCGGCAAAGTCATCCTGCCAGCGCCAGTGCACGGCTGCCCGGTACCCa                                                            <  1:101895/105‑1 (MQ=255)                                                                                                                                        cggtcgCGATCCCAGTCGAACAGGTGGCTGGTGGCTGTAGCTGTTGGGAAGCGTTCGGCAAAGTCATCCTGCCAGCGCCAGTGCACGGCTGCCCGGTACCCATCGAGCAGGCCCAGCATTGCCAGCGGATACACCCCGGCCGACAGGCCa            <  1:598655/150‑1 (MQ=255)                                                                                                                                           tcgCGATCCCAGTCGAACAGGTGGCTGGTGGCAATCACCTTGGGGAAGCGTTCGGCAAAGTCATCCTGCCAGCGCCAGTGCACGGCTGCCCGGTAccc                                                             >  2:578070/1‑98 (MQ=255)                                                                                                                                           tcgCGATCCCAGTCGAACAGGTGGCTGGTGGCAATCACCTTGGGGAAGCGTTCGGCAAAGTCATCCTGCCAGCGCCAGTGCACGGCTGCCCGGTAccc                                                             <  1:578070/98‑1 (MQ=255)                                                                                                                                               gatcCCAGTCGAACAGGTGGCTGGTGGCAATCACCTTGGGGAAGCGTTCGGCAAAGTCATCCTGCCAGCGCCAGTGCACGGCTGCCCGGTACCCATCGAGCAGGCCCAGCATTGCCAGCGGATACACCCCGGCCGACAGGCCACCGATCa     <  1:136397‑M2/146‑1 (MQ=255)                                                                                                                                                  cCCAGTCGAACAGGTGGCTGGTGGCAATCACCTTGGGGAAGCGTTCGGCAAAGTCATCCTGCCAGCGCCAGTGCACGGCTGCCCGGTACCCATCGAGCAGGCCCAGCATTGCCAGCGGATACACCCCGGCCGACAGGCCACCGATCAGGc  >  1:484283‑M2/2‑150 (MQ=255)                                                                                                                                                   |                                                                                                                                                     TGGCGCTCGCCACCCTCGCGGATGCGCTCTACCACCAGCTCTTCCGACACTGCCCCGGCCAGCTCCGCCCCGTGATCGCGCGCCAGCACCGCCAGCAGCAGGTCGGTCACGGCCATACCGCCGCAGGCGGTCAGTCGGTCGCGATCCCAGTCGAACAGGTGGCTGGTGGCAATCACCTTGGGGAAGCGTTCGGCAAAGTCATCCTGCCAGCGCCAGTGCACGGCTGCCCGGTACCCATCGAGCAGGCCCAGCATTGCCAGCGGATACACCCCGGCCGACAGGCCACCGATCAGGC  >  NC_002947/5093086‑5093380

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.