New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5093434 =	29 (1.250)	4 (0.180)	4/238	NT	14.9%	coding (236/981 nt)	PP_4482	AraC family transcriptional regulator
	?	NC_002947	5093542 =	18 (0.820)					coding (128/981 nt)	PP_4482	AraC family transcriptional regulator

CATCCTGCCAGCGCCAGTGCACGGCTGCCCGGTACCCATCGAGCAGGCCCAGCATTGCCAGCGGATACACCCCGGCCGACAGGCCACCGATCAGGCAACCACTGCGCGCCAGTTGCTTGAGCGCCGCTGAAAAGGCAGCCCCCATCGCCGCAGGCGGCTCGTCGGCCAGCAGAAAGAGCTTGTGGCAGCCCTCCAGGCGGCCGGTCCACGGCTCGCCCGGCAGCCGCCAGGCGCCTTCCTGCGCAGGCTCGGCCTGCAGGAAGACCAACTCGTAGACCACATCC  >  NC_002947/5093285‑5093568                                                                                                                                                      |                                                                                                                                       tcaggtttcggaccgtaccctatgaccacccagcgaatcggttttctcatctggcccagcaccaggcctttgaccctggcgttggccgaggaagtgttgctggtggcgcagcgtgtgcctcaggatatgggctccgagttgggattcctg                                                                                                                                        <  2:192201‑M1/1‑1 (MQ=255) tcaggtttcggaccgtaccctatgaccacccagcgaatcggttttctcatctggcccagcaccaggcctttgaccctggcgttggccgaggaagtgttgctggtggcgcagcgtgtgcatccggatgtggtctacgagttggtcttcctg                                                                                                                                        <  2:51596‑M1/1‑1 (MQ=255) cATCCTGCCAGCGCCAGTGCACGGCTGCCCGGTACCCATCGAGCAGGCCCAGCATTGCCAGCGGATACACCCCGGCCGACAGGCCACCGATCAGGCAACCACTGCGCGCCAGTTGCTTGAGCGCCGCTGAAAAGGCAGCCCCCATcgccg                                                                                                                                        <  2:484283/150‑1 (MQ=255) cATCCTGCCAGCGCCAGTGCACGGCTGCCCGGTACCCATCGAGCAGGCCCAGCATTGCCAGCGGATACACCCCGGCCGACAGGCCACCGATCAGGCAACCACTGCGCGCCAGTTGCTTGAGCGCCGCTGAAAAGGCAGCCCCCATcgccg                                                                                                                                        <  2:275173/150‑1 (MQ=255)                    cACGGCTGCCCGGTACCCATCGAGCAGGCCCAGCATTGCCAGCGGATACACCCCGGCCGACAGGCCACCGATCAGGCAACCACTGCGCGCCAGTTGCTTGAGCGCCGCTGAAAAGGCAGCCCCCATCGCCGCAGGCGGCtc                                                                                                                              >  2:487346/1‑141 (MQ=255)                    cACGGCTGCCCGGTACCCATCGAGCAGGCCCAGCATTGCCAGCGGATACACCCCGGCCGACAGGCCACCGATCAGGCAACCACTGCGCGCCAGTTGCTTGAGCGCCGCTGAAAAGGCAGCCCCCATCGCCGCAGGCGGCtc                                                                                                                              <  1:487346/141‑1 (MQ=255)                          tGCCCGGTACCCATCGAGCAGGCCCAGCATTGCCAGCGGATACACCCCGGCCGACAGGCCACCGATCAGGCAACCACTGCGCGCCAGTTGCTTGAGCGCCGCTGAAAAGGCAGCCCCCATCGCCGCAGGCGGCTCGTCGGCCAGCAGaaa                                                                                                               <  1:449128/150‑1 (MQ=255)                              cGGTACCCATCGAGCAGGCCCAGCATTGCCAGCGGATACACCCCGGCCGACAGGCCACCGATCAGGCAACCACTGCGCGCCAGTTGCTTGAGCGCCGCTGAAAAGGCAGCCCCCATCGCCGCAGGCGGCTCGTCGGCCAGCAGAAAGAGc                                                                                                           >  1:593124/1‑150 (MQ=255)                                      aTCGAGCAGGCCCAGCATTGCCAGCGGATACACCCCGGCCGACAGGCCACCGATCAGGCAACCACTGCGCGCCAGTTGCTTGAGCGCCGCTGAAAAGGCAGCCCCCATCGCCGCAGGCGGCTCGTCGGCCAGCAGAAAGAGCTTGTGGcc                                                                                                   >  2:326178/1‑149 (MQ=255)                                               gCCCAGCATTGCCAGCGGATACACCCCGGCCGACAGGCCACCGATCAGGCAACCACTGCGCGCCAGTTGCTTGAGCGCCGCTGAAAAGGCAGCCCCCATCGCCGCAg                                                                                                                                     <  1:471231/107‑1 (MQ=255)                                               gCCCAGCATTGCCAGCGGATACACCCCGGCCGACAGGCCACCGATCAGGCAACCACTGCGCGCCAGTTGCTTGAGCGCCGCTGAAAAGGCAGCCCCCATCGCCGCAg                                                                                                                                     >  2:471231/1‑107 (MQ=255)                                                       ttGCCAGCGGATACACCCCGGCCGACAGGCCACCGATCAGGCAACCACTGCGCGCCAGTTGCTTGAGCGCCGCTGAAAAGGCAGCCCCCATCGCCGCAGGCGGCTCGTCGGCCAGCAGAAAGAGCTTGTGGCAGCCCTCCAGGCGGCCgg                                                                                  <  2:539191/150‑1 (MQ=255)                                                        ccagcaccaggcctttgaccctggcgttggccgaggaagtgttgctggtggcgcagcgtgtgcatccggatgtggtctacgagttggtcttcctGCAGGCGGCTCGTCGGCCAGCAGAAAGAGCTTGTGGCAGCCCTCCAGGCGGCCGGt                                                                                 <  2:401185‑M1/56‑1 (MQ=255)                                                           cAGCGGATACACCCCGGCCGACAGGCCACCGATCAGGCAACCACTGCGCGCCAGTTGCTTGAGCGCCGCTGAAAAGGCAGCCCCCATCGCCGCAGGCGGCTCGTCGGCCAGCAGAAagag                                                                                                            >  2:536889/1‑120 (MQ=255)                                                           cAGCGGATACACCCCGGCCGACAGGCCACCGATCAGGCAACCACTGCGCGCCAGTTGCTTGAGCGCCGCTGAAAAGGCAGCCCCCATCGCCGCAGGCGGCTCGTCGGCCAGCAGAAagag                                                                                                            <  1:536889/120‑1 (MQ=255)                                                                        ccGGCCGACAGGCCACCGATCAGGCAACCACTGCGCGCCAGTTGCTTGAGCGCCGCTGAAAAGGCAGCCCCCATCGCCGCAGGCGGCTCGTCGGCCAGCAGAAAGAGCTTGTGGCAGCCCTCCAGGCGGCCGGTCCACGGCTCGCCCGGc                                                                 >  2:589589/1‑150 (MQ=255)                                                                         cGGCCGACAGGCCACCGATCAGGCAACCACTGCGCGCCAGTTGCTTGAGCGCCGCTGAAAAGGCAGCCCCCATCGCCGCAGGCGGCTCGTCGGCCAGCAGAAAGAGCTTGTGGCAGCCCTCCAGGCGGCCGGTCCACGGCTCGCCCGGCa                                                                >  2:360090/1‑150 (MQ=255)                                                                           cctggcgttggccgaggaagtgttgctggtggcgcagcgtgtgcatccggatgtggtctacgagttggtcttcctGCAGGCGGCTCGTCGGCCAGCAGAAAGAGCTTGTGGCAGCCCTCCAGGCGGCCGGTCCACGGCTCGCCCGGCAgc                                                              <  2:482310‑M1/75‑1 (MQ=255)                                                                              gACAGGCCACCGATCAGGCAACCACTGCGCGCCAGTTGCTTGAGCGCCGCTGAAAAGGCAGCCCCCATCGCCGCAGGCGGCTCGTCGGCcagca                                                                                                                   >  2:492413/1‑94 (MQ=255)                                                                              gACAGGCCACCGATCAGGCAACCACTGCGCGCCAGTTGCTTGAGCGCCGCTGAAAAGGCAGCCCCCATCGCCGCAGGCGGCTCGTCGGCcagca                                                                                                                   <  1:492413/94‑1 (MQ=255)                                                                              gACAGGCCACCGATCAGGCAACCACTGCGCGCCAGTTGCTTGAGCGCCGCTGAAAAGGCAGCCCCCATCGCCGCAGGCGGCTCGTCGGCCAGCAGAAAGAGCTTGTGGCAGCCCTCCAGGCGGCCGGTCCACGGCTCGCCCGGCAgccgc                                                           >  2:489946/1‑150 (MQ=255)                                                                                 aGGCCACCGATCAGGCAACCACTGCGCGCCAGTTGCTTGAGCGCCGCTGAAAAGGCAGCCCCCATCGCCGCAGGCGGCTCGTCGGCCAGCAGAAAGAGCTTGTGGCAGCCCTCCAGGCGGCCGGTCCACGGCTCGCCCGGCAGCCGCCAg                                                        <  1:489946/150‑1 (MQ=255)                                                                                     cACCGATCAGGCAACCACTGCGCGCCAGTTGCTTGAGCGCCGCTGAAAAGGCAGCCCCCATCGCCGCAGGCGGCTCGTCGGCCAGCAGAAAGAGCTTGTGGCAGCCCTCCAGGCGGCCGGTCCACGGCTCGCCCGGCAGCCGCCAGgcgt                                                    >  2:565698/1‑149 (MQ=255)                                                                                      aCCGATCAGGCAACCACTGCGCGCCAGTTGCTTGAGCGCCGCTGAAAAGGCAGCCCCCATCGCCGCAGGCGGCTCGTCGGCCAGCAGAAAGAGCTTGTGGCAGCCCTCCAGGCGGCCGGTCCACGGCTCGCCCGGCAGCCGCCAGGCGcc                                                   >  2:474961/1‑150 (MQ=255)                                                                                          aTCAGGCAACCACTGCGCGCCAGTTGCTTGAGCGCCGCTGAAAAGGCAGCCCCCATCGCCGCAGGCGGCTCGTCGGCCAGCAGAAAGAGCTTGTGGCAGCCCTCCAGGCGGCCGGTCCACGGCTCGCCCGGCAGCCGCCAGGCGCCTTcc                                               <  1:360090/150‑1 (MQ=255)                                                                                           tCAGGCAACCACTGCGCGCCAGTTGCTTGAGCGCCGCTGAAAAGGCAGCCCCCATCGCCGCAGGCGGCTCGTCGGCCAGCAGAAAGAGCTTGTGGCAg                                                                                                  <  2:407140/98‑1 (MQ=255)                                                                                           tCAGGCAACCACTGCGCGCCAGTTGCTTGAGCGCCGCTGAAAAGGCAGCCCCCATCGCCGCAGGCGGCTCGTCGGCCAGCAGAAAGAGCTTGTGGCAg                                                                                                  >  1:407140/1‑98 (MQ=255)                                                                                             aGGCAACCACTGCGCGCCAGTTGCTTGAGCGCCGCTGAAAAGGCAGCCCCCATCGCCGCAGGCGGCTCGTCGGCCAGCAGACAATGCTTGTGGCAGCCCTCCAGGCGGCCGGTCCACGGCTCGCCCGGCAGCCGCCAGGCGCCTTCCTgc                                            >  2:263374/1‑150 (MQ=255)                                                                                             aGGCAACCACTGCGCGCCAGTTGCTTGAGCGCCGCTGAAAAGGCAGCCCCCATCGCCGCAGGCGGCTCGTCGGCCAGCAGAAAGAGCTTGTGGCAGCCCTCCAGGCGGCCGGTCCACGGCTCGCCCGGCAGCCGCCAGGCGCCTTCCTgc                                            >  1:51596/1‑150 (MQ=255)                                                                                                   ccACTGCGCGCCAGTTGCTTGAGCGCCGCTGAAAAGGCAGCCCCCATCGCCGCAGGCGGCTCGTCGGCCAGCAGAAAGAGCTTGTGGCAGCCCTCCAGGCGGCCGGTCCACGGCTCGCCCGGCAGCCGCCAGGCGCCTTCCTGCGCAGGc                                      >  1:343409/1‑150 (MQ=255)                                                                                                        tggcgcagcgtgtgcatccggatgtggtctacgagttggtcttcctGCAGGCGGCTCGTCGGCCAGCAGAAAGAGCTTGTGGCAGCCCTCCAGGCGGCCGGTCCACGGCTCGCCCGGCAGCCGCCAGGCGCCTTCCTGCGCAGGCTCGGc                                 >  1:482310‑M1/47‑150 (MQ=255)                                                                                                          gcgcCAGTTGCTTGAGCGCCGCTGAAAAGGCAGCCCCCATCGCCGCAGGCGGCTCGTCGGCCAGCAGAAAGAGCTTGTGGCAGCCCTCCAGGCGGCCGGTCCACGGCTCGCCCGGCAGCCGCCAGGCGCCTTCCTGCGCAGGCTCGGCCt                               <  1:474961/150‑1 (MQ=255)                                                                                                            gcCAGTTGCTTGAGCGCCGCTGAAAAGGCAGCCCCCATCGCCGCAGGCGGCTCGTCGGCCAGCAGaaa                                                                                                               >  2:149412/1‑68 (MQ=255)                                                                                                            gcCAGTTGCTTGAGCGCCGCTGAAAAGGCAGCCCCCATCGCCGCAGGCGGCTCGTCGGCCAGCAGaaa                                                                                                               <  1:149412/68‑1 (MQ=255)                                                                                                                   gtgcatccggatgtggtctacgagttggtcttcctGCAGGCGGCTCGTCGGCCAGCAGAAAGAGCTTGTGGCAGCCCTCCAGGCGGCCGGTCCACGGCTCGCCCGGCAGCCGCCAGGCGCCTTCCTGCGCAGGCTCGGCCTGCAGGAAGa                      >  1:401185‑M1/36‑150 (MQ=255)                                                                                                                     ttGAGCGCCGCTGAAAAGGCAGCCCCCATCGCCGCAGGCGGCTCGTCGGCCAGCAGAAAGAGCTTGTGGCAGCCCTCCAGGCGGCCGGTCCACGGCTCGCCCGGCAGCCGCCAGGCGCCTTCCTGCGCAGGCTCGGCCTGCAg                           >  1:503066/1‑143 (MQ=255)                                                                                                                     ttGAGCGCCGCTGAAAAGGCAGCCCCCATCGCCGCAGGCGGCTCGTCGGCCAGCAGAAAGAGCTTGTGGCAGCCCTCCAGGCGGCCGGTCCACGGCTCGCCCGGCAGCCGCCAGGCGCCTTCCTGCGCAGGCTCGGCCTGCAg                           <  2:503066/143‑1 (MQ=255)                                                                                                                               cTGAAAAGGCAGCCCCCATCGCCGCAGGCGGCTCGTCGGCCAGCAGAAAGAGCTTGTGGCAGCCCTCCAGGCGGCCGGTCCACGGCTCGCCCGGCAGCCGCCAGGCGCCTTCCTGCGCAGGCTCGGCCTGCAGGAAGACCAACTCGTAGa          >  1:526113/1‑150 (MQ=255)                                                                                                                                       gCAGCCCCCATCGCCGCAGGCGGCTCGTCGGCCAGCAGAAAGAGCTTGTGCCAGCCCTCCAGGCGGACGGTCCACGGCTCGCCCGGCAGCCGCCAGGCGCCTTCCTGCGCAGGCTCGGCCTGCAGGAAGAACCACTCGTAGACCACATcc  >  1:192201/1‑150 (MQ=255)                                                                                                                                                      |                                                                                                                                       CATCCTGCCAGCGCCAGTGCACGGCTGCCCGGTACCCATCGAGCAGGCCCAGCATTGCCAGCGGATACACCCCGGCCGACAGGCCACCGATCAGGCAACCACTGCGCGCCAGTTGCTTGAGCGCCGCTGAAAAGGCAGCCCCCATCGCCGCAGGCGGCTCGTCGGCCAGCAGAAAGAGCTTGTGGCAGCCCTCCAGGCGGCCGGTCCACGGCTCGCCCGGCAGCCGCCAGGCGCCTTCCTGCGCAGGCTCGGCCTGCAGGAAGACCAACTCGTAGACCACATCC  >  NC_002947/5093285‑5093568

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.