New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 5093434 = | 29 (1.250) | 4 (0.180) | 4/238 | NT | 14.9% | coding (236/981 nt) | PP_4482 | AraC family transcriptional regulator |
? | NC_002947 | 5093542 = | 18 (0.820) | coding (128/981 nt) | PP_4482 | AraC family transcriptional regulator |
GCTTGAGCGCCGCTGAAAAGGCAGCCCCCATCGCCGCAGGCGGCTCGTCGGCCAGCAGAAAGAGCTTGTGGCAGCCCTCCAGGCGGCCGGTCCACGGCTCGCCCGGCAGCCGCCAGGCGCCTTCCTGCGCAGGCTCGGCCTGCAGGAAGACCAACTCGTAGACCACATCCGGATGCACACGCTGCGCCACCAGCAACACTTCCTCGGCCAACGCCAGGGTCAAAGGCCTGGTGCTGGGCCAGATGAGAAAACCGATTCGCTGGGTGGTCATAGGGTACGGTCCGAAACCTGA > NC_002947/5093399‑5093690 | gtgcatccggatgtggtctacgagttggtcttcctGCAGGCGGCTCGTCGGCCAGCAGAAAGAGCTTGTGGCAGCCCTCCAGGCGGCCGGTCCACGGCTCGCCCGGCAGCCGCCAGGCGCCTTCCTGCGCAGGCTCGGCCTGCAGGAAGa > 1:401185‑M1/36‑150 (MQ=255) ttGAGCGCCGCTGAAAAGGCAGCCCCCATCGCCGCAGGCGGCTCGTCGGCCAGCAGAAAGAGCTTGTGGCAGCCCTCCAGGCGGCCGGTCCACGGCTCGCCCGGCAGCCGCCAGGCGCCTTCCTGCGCAGGCTCGGCCTGCAg < 2:503066/143‑1 (MQ=255) ttGAGCGCCGCTGAAAAGGCAGCCCCCATCGCCGCAGGCGGCTCGTCGGCCAGCAGAAAGAGCTTGTGGCAGCCCTCCAGGCGGCCGGTCCACGGCTCGCCCGGCAGCCGCCAGGCGCCTTCCTGCGCAGGCTCGGCCTGCAg > 1:503066/1‑143 (MQ=255) cTGAAAAGGCAGCCCCCATCGCCGCAGGCGGCTCGTCGGCCAGCAGAAAGAGCTTGTGGCAGCCCTCCAGGCGGCCGGTCCACGGCTCGCCCGGCAGCCGCCAGGCGCCTTCCTGCGCAGGCTCGGCCTGCAGGAAGACCAACTCGTAGa > 1:526113/1‑150 (MQ=255) gCAGCCCCCATCGCCGCAGGCGGCTCGTCGGCCAGCAGAAAGAGCTTGTGCCAGCCCTCCAGGCGGACGGTCCACGGCTCGCCCGGCAGCCGCCAGGCGCCTTCCTGCGCAGGCTCGGCCTGCAGGAAGAACCACTCGTAGACCACATcc > 1:192201/1‑150 (MQ=255) tcttcctgcaggccgagcctgcgcaggaaggcgcctggcggctgccgggcgagccgtggaccggccgcctggagggctgccacaagctctttctgctggccgacgagccgcctgcAGGAAGACCAACTCGTAGACCACATCCGGATGcac > 1:401185‑M2/116‑150 (MQ=255) gccgagcctgcgcaggaaggcgcctggcggctgccgggcgagccgtggaccggccgcctggagggctgccacaagctctttctgctggccgacgagccgcctgcAGGAAGACCAACTCGTAGACCACATCCGGATGCACACGCTGCGcca > 1:482310‑M2/105‑150 (MQ=255) gtcgGCCAGCAGAAAGAGCTTGTGGCAGCCCTCCAGGCGGCCGGTCCACGGCTCGCCCGGCAGCCGCCAGGCGCCTTCCTGCGCAGGCTCGGCCTGCAGGAAGACCAACTCGTAGACCACATCCGGATGCACACGCTGCGCCACCAGCaa < 1:589589/150‑1 (MQ=255) ccAGCAGAAAGAGCTTGTGTCAGCCCTCCAGGCGGCCGGTCCACGGCTCGCCCGGCAGCCACCAGGCGCCTTCCTGCGCAGGCTCGGCCTGCAGGAAGACCAACTCGTAGACCACATCCGGATGCACACGCTGCGCCACCAGCAACACtt > 1:171538/1‑150 (MQ=255) agcagAAAGAGCTTGTGGCAGCCCTCCAGGCGGCCGGTCCACGGCTCGCCCGGCAGCCGCCAGGCGCCTTCCTGCGCAGGCTCGGCCTGCAGGAAGACCAACTCGTAGACCACATCCGGATGCACACGCTGCGCCACCAGCaa > 1:432672/1‑143 (MQ=255) agcagAAAGAGCTTGTGGCAGCCCTCCAGGCGGCCGGTCCACGGCTCGCCCGGCAGCCGCCAGGCGCCTTCCTGCGCAGGCTCGGCCTGCAGGAAGACCAACTCGTAGACCACATCCGGATGCACACGCTGCGCCACCAGCaa < 2:432672/143‑1 (MQ=255) gctgccgggcgagccgtggaccggccgcctggagggctgccacaagctctttctgctggccgacgagccgcctgcAGGAAGACCAACTCGTAGACCACATCCGGATGCACACGCTGCGCCACCAGCAACACTTCCTCGGCCAACGCCAgg < 2:482310‑M2/75‑1 (MQ=255) cTCCAGGCGGCCGGTCCACGGCTCGCCCGGCAGCCGCCAGGCGCCTTCCTGCGCAGGCTCGGCCTGCAGGAAGACCAACTCGTAGACCACATCCGGATGCACACGCTGCGCCACCAGCAACACTTCCTc < 1:200189/129‑1 (MQ=255) cTCCAGGCGGCCGGTCCACGGCTCGCCCGGCAGCCGCCAGGCGCCTTCCTGCGCAGGCTCGGCCTGCAGGAAGACCAACTCGTAGACCACATCCGGATGCACACGCTGCGCCACCAGCAACACTTCCTc > 2:200189/1‑129 (MQ=255) tCCAGGCGGCCGGTCCACGGCTCGCCCGGCAGCCGCCAGGCGCCTTCCTGCGCAGGCTCGGCCTGCAGGAAGACCAACTCGTAGACCACATCCGGATGCACACGCTGCGCCACCAGCAACACTTCCTCGGCCAACGCCAGGGTCAAAGGc > 2:454410/1‑150 (MQ=255) accggccgcctggagggctgccacaagctctttctgctggccgacgagccgcctgcAGGAAGACCAACTCGTAGACCACATCCGGATGCACACGCTGCGCCACCAGCAACACTTCCTCGGCCAACGCCAGGGTCAAAGGCCTGGTGCTgg < 2:401185‑M2/94‑1 (MQ=255) ggTCCACGGCTCGCCCGGCAGCCGCCAGGCGCCTTCCTGCGCAGGCTCGGCCTGCAGGAAGACCAACTCGTAGACCACATCCGGATGCACACGCTGCGCCACCAGCAACACTTCCTCGGCCAACGCCAgg < 1:158722/130‑1 (MQ=255) ggTCCACGGCTCGCCCGGCAGCCGCCAGGCGCCTTCCTGCGCAGGCTCGGCCTGCAGGAAGACCAACTCGTAGACCACATCCGGATGCACACGCTGCGCCACCAGCAACACTTCCTCGGCCAACGCCAgg > 2:158722/1‑130 (MQ=255) gTCCACGGCTCGCCCGGCAGCCGCCAGGCGCCTTCCTGCGCAGGCTCGGCCTGCAGGAAGACCAACTCGTAGACCACATCCGGATGCACACGCTGCGCCACCAGCAACACTTCCTCGGCCAACGCCAGGGTCAAAGGCCTGGTGCTGGGc < 1:454410/150‑1 (MQ=255) aCGGCTCGCCCGGCAGCCGCCAGGCGCCTTCCTGCGCAGGCTCGGCCTGCAGGAAGACCAACTCGTAGACCACATCCGGATGCACACGCTGCGCCACCAGCAACACTTCCTCGGCCAACGCCAGGGTCAAAGGCCTGGTGCTGGGCCAGa > 1:322338/1‑150 (MQ=255) tagCCCGGCAGCCGCCAGGCGCCTTCCTGCGTAGGCTCGGCCTGCAGGAAGACCAACTAGTAGAACCCATCCGGATGAACACGCCGCGCCACCAGCAAAACTTCCTCGGCTACCGCCAGGGGCAAAGGCCTGGTGCTGGGCCAGCTgaga > 1:186256/3‑150 (MQ=255) gCACCCGCACGGCGCCTTCCTGCGCATTCTCGGCCTGCAGGAAGACCAACTCGTAGACCACATCCGGATGCACACGCTGCGCCACCAGCAACACTTCCTCGGCCAACGCCAGGGTCAAAGGCCTGGTGCTGGGCCAGATGAGAAAACCGa < 2:343409/150‑1 (MQ=255) ccgccAGGCGCCTTCCTGCGCAGGCTCGGCCTGCAGGAAGACCAACTCGTAGACCACATCCGGATGCACACGCTGCGCCACCAGCAACACTTCCTCGGCCAACGCCAGGGTCAAAGGCCTGGTGCTGGGCCAGATGAGAAAACCGATTCg < 2:322338/150‑1 (MQ=255) cgccAGGCGCCTTCCTGCGCAGGCTCGGCCTGCAGGAAGACCAACTCGTAGACCACATCCgg > 1:591794/1‑62 (MQ=255) cgccAGGCGCCTTCCTGCGCAGGCTCGGCCTGCAGGAAGACCAACTCGTAGACCACATCCgg < 2:591794/62‑1 (MQ=255) gCTCGGCCTGCAGGAAGACCAACTCGTAGACCACATCCGGATGCACACGCTGCGCCACCAGCAACACTTCCTCGGCCAACGCCAGGGTCAAAGGCCTGGTGCTGGGCCAGATGAGAAAACCGATTCGCTGGGTGGTCATAGGGTACGGTc > 1:296315/1‑150 (MQ=255) cAGGAATCCCAACTCGGAGCCCATATCCTGAGGCACACGCTGCGCCACCAGCAACACTTCCTCGGCCAACGCCAGGGTCAAAGGCCTGGTGCTGGGCCAGATGAGAAAACCGATTCGCTGGGTGGTCATAGGGTACGGTCCGAAACCTGa < 2:192201‑M2/149‑1 (MQ=255) cAGGAAGACCAACTCGTAGACCACATCCGGATGCACACGCTGCGCCACCAGCAACACTTCCTCGGCCAACGCCAGGGTCAAAGGCCTGGTGCTGGGCCAGATGAGAAAACCGATTCGCTGGGTGGTCATAGGGTACGGTCCGAAACCTGa < 2:51596‑M2/149‑1 (MQ=255) | GCTTGAGCGCCGCTGAAAAGGCAGCCCCCATCGCCGCAGGCGGCTCGTCGGCCAGCAGAAAGAGCTTGTGGCAGCCCTCCAGGCGGCCGGTCCACGGCTCGCCCGGCAGCCGCCAGGCGCCTTCCTGCGCAGGCTCGGCCTGCAGGAAGACCAACTCGTAGACCACATCCGGATGCACACGCTGCGCCACCAGCAACACTTCCTCGGCCAACGCCAGGGTCAAAGGCCTGGTGCTGGGCCAGATGAGAAAACCGATTCGCTGGGTGGTCATAGGGTACGGTCCGAAACCTGA > NC_002947/5093399‑5093690 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |