New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5725015	22 (0.950)	4 (0.180)	4/242	NT	15.0%	coding (2007/2574 nt)	opgH	glucans biosynthesis glucosyltransferase H
	?	NC_002947	= 5725039	24 (1.070)					coding (1983/2574 nt)	opgH	glucans biosynthesis glucosyltransferase H

CAGCTTCTCGTCCTTGGCCGCCAGGCCCAGGCGGGTGCGGCTGGAAATCACCGATACCGGGATCGACAGCACCAGCGAACCGACGATAGGCGCCAGCCACCACAGGAAGCTCGGGTTCAACCACGCCACCAGTGCGGCCCAGGCAATGCCCAGCAGCGTCTGCGGGCCATGCCGGCGCACCGCTTCGCCCCACGGCGTGGAGTCGTCGTCACGCTGCGGCGAGTTCCAGGTCGCAGCCCAGCCGAGGAATGCGGCCAGCACGAAGCGGGTGTGGAAGATCATGCGTACCGGTGC  >  NC_002947/5724871‑5725164                                                                                                                                                 |                                                                                                                                                      cAGCTTCTCGTCCTTGGCCGCCAGGCCCAGGCGGGTGCGGCTGGAAATCACCGATACCGGGATCGACAGCACCAGCGAACCGACGATAGGCGCCAGCCACCACAGGAAGCTCGGGTTCAACCACGCCACCAGTGCGGCCCAGGCAATGcc                                                                                                                                                  >  2:139364/1‑150 (MQ=255)    cTTCTCGTCCTTGGCCGCCAGGCCCAGGCGGGTGCGGCTGGAAATCACCGATACCGGGATCGACAGCACCAGCGAACCGACGATAGGCGCCAGCCACCACAGGAAGCTCGGGTTCAACCACGCCACCAGTGCGGCCCAGGCAATGCCcag                                                                                                                                               >  1:569566/1‑150 (MQ=255)    cTTCTCGTCCTTGGCCGCCAGGCCCAGGCGGGTGCGGCTGGAAATCACCGATACCGGGATCGACAGCACCAGCGAACCGACGATAGGCGCCAGCCACCACAGGAAGCTCGGGTTCAACCACGCCACCAGTGCGGCCCAGGCAATGCCcag                                                                                                                                               >  1:530143/1‑150 (MQ=255)      tctcGTCCTTGGCCGCCAGGCCCAGGCGGGTGCGGCTGGAAATCACCGATACCGGGATCGACAGCACCAGCGAACCGACGATAGGCGCCAGCCACCACAGGAAGCTCGGGTTCAACCACGCCACCAGTGCGGCCCAGGCAATGCCcagca                                                                                                                                             <  2:472336/150‑1 (MQ=255)             cTTGGCCGCCAGGCCCAGGCGGGTGCGGCTGGACATGACTGATACCGGGATCGACAGCACCAGCGAACCGACGATAGGCGCCAGCCGCCACAGGAAGCTCGGGTTCAACCACGCCACCAGTGCGGCCCAGGCAATGCCCAGCAGCGTCTg                                                                                                                                      >  1:452759/1‑150 (MQ=255)                ggCCGCCAGGCCCAGGCGGGTGCGGCTGGAAATCACCGATACCGGGATCGACAGCACCAGCGAACCGACGATAGGCGCCAGCCACCACAGGAAGCTCGGGTTCAACCCCGCCACCAGTGCGGCCCAGGCAATTCCCAGCAGCGTCTGCgg                                                                                                                                   <  2:89602/150‑1 (MQ=255)                                     gCGGCTGGAAATCACCGATACCGGGATCGACAGCACCAGCGAACCGACGATAGGCGCCAGCCACCACAGGAAGCTCGGGTTCAACCACGCCACCAGTGCGGCCCAGGCAATGCCCAGCAGCGTCTGCGGGCCATGCCGGCGCACCGCTTc                                                                                                              <  2:75214/150‑1 (MQ=255)                                     gCGGCTGGAAATCACCGATACCGGGATCGACAGCACCAGCGAACCGACGATAGGCGCCAGCCACCACAGGAAGCTCGGGTTCAACCACGCCACCAGTGCGGCCCAGGCAATGCCCAGCAGCGTCTGCGGGCCATGCCGGCGCACCGCTTc                                                                                                              <  2:406071/150‑1 (MQ=255)                                                  aCCGATACCGGGATCGACAGCACCAGCGAACCGACGATAGGCGCCAGCCACCACAGGAAGCTCGGGTTCAACCACGCCACCAGTGCGGCCCAGGCAtggcccgcagacgctgctgggcattgcctgg                                                                                                                        <  2:549131‑M1/127‑32 (MQ=255)                                                  aCCGATACCGGGATCGACAGCACCAGCGAACCGACGATAGGCGCCAGCCACCACAGGAAGCTCGGGTTCAACCACGCCACCAGTGCGGCCCAGGCAtggcccgcagacgctgctgggcattgcctgg                                                                                                                        >  1:549131‑M1/1‑96 (MQ=255)                                                    cGATACCGGGATCGACAGCACCAGCGAACCGACGATAGGCGCCAGCCACCACAGGAAGCTCGGGTTCAACCACGCCACCAGTGCGGCCCAGGCAATGCCCAGCAGCGTCTGCGGGCCATGCCGGCGCACCGCTTCGCCCCACGGCGTGGa                                                                                               <  2:364834/150‑1 (MQ=255)                                                    cGATACCGGGATCGACAGCACCAGCGAACCGACGATAGGCGCCAGCCACCACAGGAAGCTCGGGTTCAACCACGCCACCAGTGCGGCCCAGGCAATGCCCAGCAGCGTCTGCGGGCCATGCCGGCGCACCGCTTCGCCCCACGGCGTGGa                                                                                               >  1:164583/1‑150 (MQ=255)                                                    cGATACCGGGATCGACAGCACCAGCGAACCGACGATAGGCGCCAGCCACCACAGGAAGCTCGGGTTCAACCACGCCACCAGTGCGGCCCAGGCAATGCCCAGCAGCGTCTGAGGGCCATGCCGGTGAACCGCTTCGCCCCACGGCGTGGa                                                                                               <  2:320837/150‑1 (MQ=255)                                                     gATACCGGGATCGACAGCACCAGCGAACCGACGATAGGCGCCAGCCACCACAGGAAGCTCGGGTTCAACCACGCCACCAGTGCGGCCCAGGCAATGCCCAGCAGCGTCTGCGGGCCATGCCGGCGCACCGCTTCGCCCCACGGCGTGGAg                                                                                              <  1:40132/150‑1 (MQ=255)                                                            ggATCGACAGCACCAGCGAACCGACGATAGGCGCCAGCCACCACAGGAAGCTCGGGTTCAACCCCGCCACCAGTGCGGCCCAGGCAATGCCCAGCAGCGTCTGCGGGCCATGCCGGCGCACCGCTTc                                                                                                              <  2:23240/127‑1 (MQ=255)                                                            ggATCGACAGCACCAGCGAACCGACGATAGGCGCCAGCCACCACAGGAAGCTCGGGTTCAACCACGCCACCAGTGCGGCCCAGGCAATGCCCAGCAGCGTCTGCGGGCCATGCCGGCGCACCGCTTc                                                                                                              >  1:23240/1‑127 (MQ=255)                                                                         cAGCGAACCGACGATAGGCGCCAGCCACCACAGGAAGCTCGGGTTCAACCACGCCACCAGTGCGGCCCAGGCAATGCCCAGCAGCGTCTGCGGGCCATGCCGGCGCACCGCTTCGCCCCACGGCGTGGAGTCGTCGTCACGCTGCGGCGa                                                                          >  1:33826/1‑150 (MQ=255)                                                                          aGCGAACCGACGATAGGCGCCAGCCACCACAGGAAGCTCGGGTTCAACCACGCCACCAGTGCGGCCCAGGCAATGCCCAGCAGCGTCTGCGGGCCATGCCGGCGCACCGCTTCGCCCCACGGCGTGGAGTCGTCGTCACGCTGCGGCGAg                                                                         <  2:164583/150‑1 (MQ=255)                                                                           gCGAACCGACGATAGGCGCCAGCCACCACAGGAAGCTCGGGTTCAACCACGCCACCAGTGCGGCCCAGGCAATGCCCAGCAGCGTCTGCGGGCCATGCCCACGCACCGCTTCGCCCCACTGCTTTTAGTCGTCGTCACGCTGCGGCGAGt                                                                        <  1:385357/150‑1 (MQ=255)                                                                                 cgacgaTAGGCGCCAGCCACCACAGGAAGCTCGGGTTCAACCACGCCACCAGTGCGGCCCAGGCAtggcccgcagacgctgctgg                                                                                                                                   <  2:65676‑M1/85‑21 (MQ=255)                                                                                 cgacgaTAGGCGCCAGCCACCACAGGAAGCTCGGGTTCAACCACGCCACCAGTGCGGCCCAGGCAtggcccgcagacgctgctgg                                                                                                                                   >  1:65676‑M1/1‑65 (MQ=255)                                                                                 cgacgaTAGGCGCCAGCCACCACAGGAAGCTCGGGTTCAACCACGCCACCAGTGCGGCCCAGGCAATGCCCAGCAGCGTCTGCGGGCCATGCCGGCGCCCCGCTTCGCCCCACGGCGTGGAGTCGTCGTCACGCTGCGGCGAGTTCCAgg                                                                  >  1:136174/1‑150 (MQ=255)                                                                                         ggCGCCAGCCACCACAGGAAGCTCGGGTTCAACCACGCCACCAGTGCGGCCCAGGCAATGCCCAGCAGCGTCTGCGGGCCATGCCGGCGCACCGCTTCGCCCCACGGCGTGGAGTCGTCGTCACGCTGCGGCGAGTTCCAGGTCGcagcc                                                          <  1:347858/150‑1 (MQ=255)                                                                                              cagccaCCACAGGAAGCTCGGGTTCAACCACGCCACCAGTGCGGCCCAGGCAATGCCCAGCAGCGTCTGCGGGCCATGCCGGCGCACCGCTTCGCCCCACGGCGTGGAGTCGTCGCCACGCTGCGGCGAGTTCCAGGt                                                                 <  2:161085/138‑1 (MQ=255)                                                                                              cagccaCCACAGGAAGCTCGGGTTCAACCACGCCACCAGTGCGGCCCAGGCAATGCCCAGCAGCGTCTGCGGGCCATGCCGGCGCACCGCTTCGCCCCACGGCGTGGAGTCGTCGCCACGCTGCGGCGAGTTCCAGGt                                                                 >  1:161085/1‑138 (MQ=255)                                                                                                              cTCGGGTTCAACCACGCCACCAGTGCGGCAACGCCACTGCCCAGCAGCGTCTGCGGGCCATGCCGGCGCACCGCTTCGCCCCACGGCGTGGAGTCGTCGTCACGCTGCGGCGAGTTCCAGGTCGCAGCCCAGCCGAGGAATGCGGCCaag                                     <  2:452759/150‑3 (MQ=255)                                                                                                                       aaCCACGCCACCAGTGCGCCCCAGGCAATGCCCAGCAGCGTCTGCGGCCCATGCCGGCGCACCGCTTCGCCAGCCGCCGTGTAGTCGTCGTCACGCTGCGGCGAGTTCCAGGTCGCAGCCCAGCCGAGGAATGCGGCCAGCACGAAGCgg                            <  1:139364/150‑1 (MQ=255)                                                                                                                                           ccAGGCAATGCCCAGCAGCGTCTGCGGGCCAtgcctgggccgcactggtggcgtggttgaacccgagcttcctgtggtggctggcgcctatcgtcggttcgctggtgctgtcgatcccggtatcggt                               <  2:549131‑M2/127‑97 (MQ=255)                                                                                                                                           ccAGGCAATGCCCAGCAGCGTCTGCGGGCCAtgcctgggccgcactggtggcgtggttgaacccgagcttcctgtggtggctggcgcctatcgtcggttcgctggtgctgtcgatcccggtatcggt                               >  1:549131‑M2/1‑31 (MQ=255)                                                                                                                                                 aaTGCCCAGCAGCGTCTGCGGGCCATGCCGGCGCACCGCTTCGCCCCACGGCGTGGAGTCGTCGTCACGCTGCGGCGAGTTCCAGGTCGCAGCCCAGCCGAGGAATGCGGCCAGCACGAAGCGGGTGTGGAAGATCATGCGTACCGGTGc  >  2:123194/1‑150 (MQ=255)                                                                                                                                                 |                                                                                                                                                      CAGCTTCTCGTCCTTGGCCGCCAGGCCCAGGCGGGTGCGGCTGGAAATCACCGATACCGGGATCGACAGCACCAGCGAACCGACGATAGGCGCCAGCCACCACAGGAAGCTCGGGTTCAACCACGCCACCAGTGCGGCCCAGGCAATGCCCAGCAGCGTCTGCGGGCCATGCCGGCGCACCGCTTCGCCCCACGGCGTGGAGTCGTCGTCACGCTGCGGCGAGTTCCAGGTCGCAGCCCAGCCGAGGAATGCGGCCAGCACGAAGCGGGTGTGGAAGATCATGCGTACCGGTGC  >  NC_002947/5724871‑5725164

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.