New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1896811	20 (0.870)	4 (0.190)	4/232	NT	17.2%	coding (305/318 nt)	sugE	transporter
	?	NC_002947	= 1896838	20 (0.930)					coding (278/318 nt)	sugE	transporter

CCGGCCAAAGGCTTCTTCAAGCGCCTGTGGTCGCGGGTGACCATCGTGGCAGGCGCCGCCATCCCGGTGGAGGCGGCGCAGCCTGAAGTGTTGCGCGAACAGGTCAGCCGCCTGCGCGGCCCTCTGCGATAGGGGTTAGCTGGCGCTGACTTTCAGGCCGACAAGGCCGCAGACGATCAGCGCCACACTGACCAGCCGCACCAGGGCCATGGACTCGCCGAACAGAATGATCCCGGCGATGACCGTACCGACTGCGCCTACGCCGGTCCAGATGGCATAGGCGGTGCCCAGCGGCAGT  >  NC_002947/1896663‑1896960                                                                                                                                                     |                                                                                                                                                      ccGGCCAAAGGCTTCTTCAAGCGCCTGTGGTCGCGGGTGACCATCGTGGCAGGCGCCGCCATCCCGGTGGAGGCGGCGCAGCCTGAAGTGTTGCGCGAACAGGTCAGCCGCCTGCGCGGCCCTCTGCGATAGGGGTTAGCTGGCGCTGAc                                                                                                                                                      >  1:41730/1‑150 (MQ=255) ccGGACAAAGGCTTCTTCAAGCGCCTGTGGTCGCGGGTGACCATCGTGGCAGGCGCCGCCATCCCGGTGGAGGCGGCGCAGCCTGAAGTGTTGCGCGAACAGGTCAGCCGCCTGCGCGGCCCTCTGCGATAGGGGTTAGCTGGCGCTGAc                                                                                                                                                      >  2:282478/1‑150 (MQ=255)      cAAAGGCTTCTTCAAGCGCCTGTGGTCGCGGGTGACCATCGTGGCAGGCGCCGCCATCCCGGTGGAGGCGGCGCAGCCTGAAGTGTTGCGCGAACAGGTCAGCCGCCTGCGCGGCCCTCTGCGATAGGGGTTAGCTGGCGCTGACTTTCa                                                                                                                                                 <  1:352881/150‑1 (MQ=255)        aaGGCTTCTTCAAGCGCCTGTGGTCGCGGGTGACCATCGTGGCAGGCGCCGCCATCCCGGTGGAGGCGGCGCAGCCTGAAGTGTTGCGCGAACAGGTCAGCCGCCTGCGCGGCCCTCTGCGATAGGGGTTAGCTGGCGCTGACTTTCAgg                                                                                                                                               <  2:486798/150‑1 (MQ=255)                ttcAAGCGCCTGTGGTCGCGGGTGACCATCGTGGCAGGCGCCGCCATCCCGGTGGAGGCGGCGCAGCCTGAAGTGTTGCGCGAACAGGTCAGCCGCCTGCGCGGCCCTCTGCGATAGGGGTTAGCTGGCGCTGACTTTCAGGCCGACAAg                                                                                                                                       >  2:343806/1‑150 (MQ=255)                                cgcgGGTGACCATCGTGGCAGGCGCCGCCATCCCGGTGGAGGCGGCGCAGCCTGAAGTGTTGCGCGAACAGGTCAGCCGCCTGCGCGGCCCTCTGCGATAGGGGTTAGCTGGCGCTGACTTTCAGGCCGACAAGGCCGCAGACGAtcagc                                                                                                                       >  1:151719‑M2/1‑145 (MQ=255)                                    ggTGACCATCGTGGCAGGCGCCGCCATCCCGGTGGAGGCGGCGCAGCCTGAAGTGTTGCGCGAACAGGTCAGCCGCCTGCGCGGCCCTCTGCGATAGGGGTTAGCTGGCGCTGACTTTCAGGCCGACAAGGCCGCAGACGAtcagcgcca                                                                                                                   >  2:41730‑M2/1‑141 (MQ=255)                                     gTGACCATCGTGGCAGGCGCCGCCATCCCGGTGGAGGCGGCGCAGCCTGAAGTGTTGCGCGAACAGGTCAGCCGCCTGCGCGGCCCTCTGCGATAGGGGTTAGCTGGCGCTGAtcgtctgcggccttgtcggcctgaaagtcagcgccag                                                                                                                  <  1:494416‑M1/150‑38 (MQ=255)                                     gTGACCATCGTGGCAGGCGCCGCCATCCCGGTGGAGGCGGCGCAGCCTGAAGTGTTGCGCGAACAGGTCAGCCGCCTGCGCGGCCCTCTGCGATAGGGGTTAGCTGGCGCTGAtcgtctgcggccttgtcggcctgaaagtcagcgccag                                                                                                                  >  2:494416‑M1/1‑113 (MQ=255)                                          cATCGTGGCAGGCGCCGCCATCCCGGTGGAGGCGGCGCAGCCTGAAGTGTTGCGCGAACAGGTCAGCCGCCTGCGCGGCCCTCTGCGATAGGGGTTAGCTGTCGCTGACTTTCAGGCCGACAAGGCCGCAGACGATCAGCGCCACACTGa                                                                                                             <  1:419333/150‑1 (MQ=255)                                          cATCGTGGCAGGCGCCGCCATCCCGGTGGAGGCGGCGCAGCCTGAAGTGTTGCGCGAACAGGTCAGCCGCCTGCGCGGCCCTCTGCGATAGGGGTTAGCTGGCGCTGACTTTCAGGCCGACAAGGCCGCAGACGATCAGCGCCACACTGa                                                                                                             >  1:30794/1‑150 (MQ=255)                                          cATCGTGGCAGGCGCCGCCATCCCGGTGGAGGCGGCGCAGCCTGAAGTGTTGCGCGAACAGGTCAGCCGCCTGCGCGGCCCTCTGCGATAGGGGTTAGCTGGCGCTGACTTTCAGGCCGACAAGGCCGCAGACGATCAGCGCCACACTGa                                                                                                             >  1:560070/1‑150 (MQ=255)                                                 gCAGGCGCCGCCATCCCGGTGGAGGCGGCGCAGCCTGAAGTGTTGCGCGAACAGGTCAGCCGCCTGCGCGGCCCTCTGCGATAGGGGTTAGCTGGCGCTGAtcgtctgcggccttgtcggcctgaaagtcagcgcca                                                                                                                   >  1:399923‑M1/1‑101 (MQ=255)                                                 gCAGGCGCCGCCATCCCGGTGGAGGCGGCGCAGCCTGAAGTGTTGCGCGAACAGGTCAGCCGCCTGCGCGGCCCTCTGCGATAGGGGTTAGCTGGCGCTGAtcgtctgcggccttgtcggcctgaaagtcagcgcca                                                                                                                   <  2:399923‑M1/137‑37 (MQ=255)                                                  cAGGCGCCGCCATCCCGGTGGAGGCGGCGCAGCCTGAAGTGTTGCGCGAACAGGTCAGCCGCCTGCGCGGCCCTCTGCGATAGGGGTTAGCTGGCGCTGACTTTCAGGCCGACAAGGCCGCAGACGATCAGCGCCACACTGACCAGCCGc                                                                                                     >  2:48091/1‑150 (MQ=255)                                                    ggCGCCGCCATCCCGGTGGAGGCGGCGCAGCCTGAAGTGTTGCGCGAACAGGTCAGCCGCCTGCGCGGCCCTCTGCGATAGGGGTTAGCTGGCGCTGACTTTCAGGCCGACAAGGCCGCAGACGATCAGCGCCACACTGACCAGCCGCAc                                                                                                   >  1:530895/1‑150 (MQ=255)                                                             aTCCCGGTGGAGGCGGCGCAGCCTGAAGTGTTGCGCGAACAGGTCAGCCGCCTGCGCGGCCCTCTGCGATAGGGGTTAGCTGGCGCTGACTTTCAGGCCGACAAGGCCGCAGACGATCAGCGCCACACTGACCAGCCGCACCAGGGCCAt                                                                                          <  1:343806/150‑1 (MQ=255)                                                                ccGGTGGAGGCGGCGCAGCCTGAAGTGTTGCGCGAACAGGTCAGCCGCCTGCGCGGCCCTCTGCGATAGGGGTTAGCTGGCGCTGACTTTCAGGCCGACAAGGCCGCAGACGATCAGCGCCACACTGACCAGCCGCACCAGGGCCATGGa                                                                                       >  2:542479/1‑150 (MQ=255)                                                                              gcAGCCTGAAGTGTTGCGCGAACAGGTCAGCCGCCTGCGCGGCCCTCTGCGATAGGGGTTAGCTGGCGCTGACTTTCAGGCCGACAAGGCCGCAGACGATCAGCGCCACACTGACCAGCCGCACCAGGGCCATGGACTCGCCgggatcat                                                                         >  2:304105/1‑143 (MQ=255)                                                                                      aaGTGTTGCGCGAACAGGTCAGCCGCCTGCGCGGCCCTCTGCGATAGGGGTTAGCTGGCGCTGACTTTCAGGCCGACAAGGCCGCAGACGATCAGCGCCACACTGACCAGCCGCACCAGGGCCATGGACTCGCCGAACAGAATGATCCCg                                                                 >  1:364807/1‑150 (MQ=255)                                                                                                  aaCAGGTCAGCCGCCTGCGCGGCCCTCTGCGATAGGGGTTAGCTGGCGCTGACTTTCAGGCCGACAAGGCCGCAGACGATCAGCGCCACACTGACCAGCCGCACCAGGGCCATGGACTCGCCGAACAGAATGATCCCGGCGATGACCGTa                                                     <  2:364807/150‑1 (MQ=255)                                                                                                                   cgcgGCCCTCTGCGATAGGGGTTAGCTGGCGCTGACTTTCAGGCCGACAAGGCCGCAGACGATCAGCGCCACACTGACCAGCCGCACCAGGGCCATAGGCAATCCGAACAGAATGATCCCGGCGATGACCGTACCGACTGCGCCTACGcc                                    >  2:173594/1‑150 (MQ=255)                                                                                                                    gcgGCCCTCTGCGATAGGGGTTAGCTGGCGCTGACTTTCAGGCCGACAAGGCCGCAGACGATCAGCGCCACACTGACCAGCCGCACCAGGGCCATGGACTCGCCGAACAGAATGATCCCGGCGATGACCGTACCGACTGCGCCTACGCCg                                   <  1:48091/150‑1 (MQ=255)                                                                                                                      ggcgcactGCGAAAGGTGTTAGCTGGGGCTGACTTTCATGGCGACAGGACCGCAGGCGAATAGCGCCACACTCACCAGCCGCACCAGGGCCATGTACTCGCCGAACAGCATTATCTCGGCGATGACCGTACCAACTGCGCCTACGCCgga                                 >  2:51585/7‑149 (MQ=255)                                                                                                                                gATAGGTGTTAGCTGGCGCTTACTTTCAGGCCGACAAGGCCGCAGACGATCAGCGCCACACTGACCAGCCGCACCAGGGCCATGGAATCGCCGAACAGAATGATCCCGGCGATGACCGTACCGACTGCGCCTACGCCGGTCCAGATGGCa                       <  1:282478/150‑1 (MQ=255)                                                                                                                                     gggTTAGCTGGCGCTGACTTTCAGGCCGACAAGGCCGCAGACGATCAGCGCCACACTGACCAGCCGCACCAGGGCCATGGACTCGCCGAACAGAATGATCCCGGCGATGACCGTACCGACTGCGCCTACGCCGGTCCAGATGGCATAGGc                  >  1:577561/1‑150 (MQ=255)                                                                                                                                      ggTTAGCTGGCGCTGACTTTCAGGCCGACAAGGCCGCAGACGATCAGCGCCACACTGACCAGCCGCACCAGGGCCATGGACTCGCCGAACAGAATGATCCCGGCGATGACCGTACCGACTGCGCCTACGCCGGTCCAGATGGCATAGGCg                 >  1:465815/1‑150 (MQ=255)                                                                                                                                         tAGCTGGCGCTGACTTTCAGGCCGACAAGGCCGCAGACGATCAGCGCCACACTGACCAGCCGCACCAGGGCCATGGACTCGCCGAACAGAATGATCCCGGCGATGACCGTACCGACTGCGCCTACGCCGGTCCAGATGGCATAGGCGGTg              <  2:560070/150‑1 (MQ=255)                                                                                                                                            cTGGCGCTGACTTTCAGGCCGACAAGGCCGCAGACGAtcagcgccagctaacccctatcgcagagggccgcgcaggcggctgacctgttcgcgcaacacttcaggctgcgccgcctccaccgggatggcggcgcctgccacgatggtcac           <  1:494416‑M2/150‑114 (MQ=255)                                                                                                                                            cTGGCGCTGACTTTCAGGCCGACAAGGCCGCAGACGAtcagcgccagctaacccctatcgcagagggccgcgcaggcggctgacctgttcgcgcaacacttcaggctgcgccgcctccaccgggatggcggcgcctgccacgatggtcac           >  2:494416‑M2/1‑37 (MQ=255)                                                                                                                                             tGGCGCTGAtcgtctgcggccttgtcggcctgaaagtcagcgccagctaacccctatcgcagagggccgcgcaggcggctgacctgttcgcgcaacacttcaggctgcgccgcctccaccgggatggcggcgcctgccacgatggtcacc          >  2:41730‑M1/1‑9 (MQ=255)                                                                                                                                             tGGCGCTGACTTTCAGGCCGACAAGGCCGCAGACGAtcagcgccagctaacccctatcgcagagggccgcgcaggcggctgacctgttcgcgcaacacttcaggctgcgccgcctccaccgggatggcggcgcctgc                       <  2:399923‑M2/137‑102 (MQ=255)                                                                                                                                             tGGCGCTGACTTTCAGGCCGACAAGGCCGCAGACGAtcagcgccagctaacccctatcgcagagggccgcgcaggcggctgacctgttcgcgcaacacttcaggctgcgccgcctccaccgggatggcggcgcctgc                       >  1:399923‑M2/1‑36 (MQ=255)                                                                                                                                                 gcTGAtcgtctgcggccttgtcggcctgaaagtcagcgccagctaacccctatcgcagagggccgcgcaggcggctgacctgttcgcgcaacacttcaggctgcgccgcctccaccgggatggcggcgcctgccacgatggtcacccgcg      >  1:151719‑M1/1‑5 (MQ=255)                                                                                                                                                     aCTTTCAGGCCGACAAGGCCGCAGACGATCAGCGCCACACTGACCAGCCGCACCAGGGCCATGGACTCGCCGAACAGAATGATCCCGGCGATGACCGTACCGACTGCGCCTACGCCGGTCCAGATGGCATAGGCGGTGCCCAGCGGCAGt  >  1:582843/1‑150 (MQ=255)                                                                                                                                                     |                                                                                                                                                      CCGGCCAAAGGCTTCTTCAAGCGCCTGTGGTCGCGGGTGACCATCGTGGCAGGCGCCGCCATCCCGGTGGAGGCGGCGCAGCCTGAAGTGTTGCGCGAACAGGTCAGCCGCCTGCGCGGCCCTCTGCGATAGGGGTTAGCTGGCGCTGACTTTCAGGCCGACAAGGCCGCAGACGATCAGCGCCACACTGACCAGCCGCACCAGGGCCATGGACTCGCCGAACAGAATGATCCCGGCGATGACCGTACCGACTGCGCCTACGCCGGTCCAGATGGCATAGGCGGTGCCCAGCGGCAGT  >  NC_002947/1896663‑1896960

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.