New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1896811	20 (0.870)	4 (0.190)	4/232	NT	17.2%	coding (305/318 nt)	sugE	transporter
	?	NC_002947	= 1896838	20 (0.930)					coding (278/318 nt)	sugE	transporter

CGCGGGTGACCATCGTGGCAGGCGCCGCCATCCCGGTGGAGGCGGCGCAGCCTGAAGTGTTGCGCGAACAGGTCAGCCGCCTGCGCGGCCCTCTGCGATAGGGGTTAGCTGGCGCTGACTTTCAGGCCGACAAGGCCGCAGACGATCAGCGCCACACTGACCAGCCGCACCAGGGCCATGGACTCGCCGAACAGAATGATCCCGGCGATGACCGTACCGACTGCGCCTACGCCGGTCCAGATGGCATAGGCGGTGCCCAGCGGCAGTTCCTTCATGGCCAGGCCCAGCAG  >  NC_002947/1896694‑1896983                                                                                                                                                 |                                                                                                                                                  cgcgGGTGACCATCGTGGCAGGCGCCGCCATCCCGGTGGAGGCGGCGCAGCCTGAAGTGTTGCGCGAACAGGTCAGCCGCCTGCGCGGCCCTCTGCGATAGGGGTTAGCTGGCGCTGACTTTCAGGCCGACAAGGCCGCAGACGAtcagc                                                                                                                                              >  1:151719‑M2/1‑145 (MQ=255)     ggTGACCATCGTGGCAGGCGCCGCCATCCCGGTGGAGGCGGCGCAGCCTGAAGTGTTGCGCGAACAGGTCAGCCGCCTGCGCGGCCCTCTGCGATAGGGGTTAGCTGGCGCTGACTTTCAGGCCGACAAGGCCGCAGACGAtcagcgcca                                                                                                                                          >  2:41730‑M2/1‑141 (MQ=255)           cATCGTGGCAGGCGCCGCCATCCCGGTGGAGGCGGCGCAGCCTGAAGTGTTGCGCGAACAGGTCAGCCGCCTGCGCGGCCCTCTGCGATAGGGGTTAGCTGTCGCTGACTTTCAGGCCGACAAGGCCGCAGACGATCAGCGCCACACTGa                                                                                                                                    <  1:419333/150‑1 (MQ=255)           cATCGTGGCAGGCGCCGCCATCCCGGTGGAGGCGGCGCAGCCTGAAGTGTTGCGCGAACAGGTCAGCCGCCTGCGCGGCCCTCTGCGATAGGGGTTAGCTGGCGCTGACTTTCAGGCCGACAAGGCCGCAGACGATCAGCGCCACACTGa                                                                                                                                    >  1:30794/1‑150 (MQ=255)           cATCGTGGCAGGCGCCGCCATCCCGGTGGAGGCGGCGCAGCCTGAAGTGTTGCGCGAACAGGTCAGCCGCCTGCGCGGCCCTCTGCGATAGGGGTTAGCTGGCGCTGACTTTCAGGCCGACAAGGCCGCAGACGATCAGCGCCACACTGa                                                                                                                                    >  1:560070/1‑150 (MQ=255)                   cAGGCGCCGCCATCCCGGTGGAGGCGGCGCAGCCTGAAGTGTTGCGCGAACAGGTCAGCCGCCTGCGCGGCCCTCTGCGATAGGGGTTAGCTGGCGCTGACTTTCAGGCCGACAAGGCCGCAGACGATCAGCGCCACACTGACCAGCCGc                                                                                                                            >  2:48091/1‑150 (MQ=255)                     ggCGCCGCCATCCCGGTGGAGGCGGCGCAGCCTGAAGTGTTGCGCGAACAGGTCAGCCGCCTGCGCGGCCCTCTGCGATAGGGGTTAGCTGGCGCTGACTTTCAGGCCGACAAGGCCGCAGACGATCAGCGCCACACTGACCAGCCGCAc                                                                                                                          >  1:530895/1‑150 (MQ=255)                              aTCCCGGTGGAGGCGGCGCAGCCTGAAGTGTTGCGCGAACAGGTCAGCCGCCTGCGCGGCCCTCTGCGATAGGGGTTAGCTGGCGCTGACTTTCAGGCCGACAAGGCCGCAGACGATCAGCGCCACACTGACCAGCCGCACCAGGGCCAt                                                                                                                 <  1:343806/150‑1 (MQ=255)                                 ccGGTGGAGGCGGCGCAGCCTGAAGTGTTGCGCGAACAGGTCAGCCGCCTGCGCGGCCCTCTGCGATAGGGGTTAGCTGGCGCTGACTTTCAGGCCGACAAGGCCGCAGACGATCAGCGCCACACTGACCAGCCGCACCAGGGCCATGGa                                                                                                              >  2:542479/1‑150 (MQ=255)                                               gcAGCCTGAAGTGTTGCGCGAACAGGTCAGCCGCCTGCGCGGCCCTCTGCGATAGGGGTTAGCTGGCGCTGACTTTCAGGCCGACAAGGCCGCAGACGATCAGCGCCACACTGACCAGCCGCACCAGGGCCATGGACTCGCCgggatcat                                                                                                >  2:304105/1‑143 (MQ=255)                                                       aaGTGTTGCGCGAACAGGTCAGCCGCCTGCGCGGCCCTCTGCGATAGGGGTTAGCTGGCGCTGACTTTCAGGCCGACAAGGCCGCAGACGATCAGCGCCACACTGACCAGCCGCACCAGGGCCATGGACTCGCCGAACAGAATGATCCCg                                                                                        >  1:364807/1‑150 (MQ=255)                                                                   aaCAGGTCAGCCGCCTGCGCGGCCCTCTGCGATAGGGGTTAGCTGGCGCTGACTTTCAGGCCGACAAGGCCGCAGACGATCAGCGCCACACTGACCAGCCGCACCAGGGCCATGGACTCGCCGAACAGAATGATCCCGGCGATGACCGTa                                                                            <  2:364807/150‑1 (MQ=255)                                                                                    cgcgGCCCTCTGCGATAGGGGTTAGCTGGCGCTGACTTTCAGGCCGACAAGGCCGCAGACGATCAGCGCCACACTGACCAGCCGCACCAGGGCCATAGGCAATCCGAACAGAATGATCCCGGCGATGACCGTACCGACTGCGCCTACGcc                                                           >  2:173594/1‑150 (MQ=255)                                                                                     gcgGCCCTCTGCGATAGGGGTTAGCTGGCGCTGACTTTCAGGCCGACAAGGCCGCAGACGATCAGCGCCACACTGACCAGCCGCACCAGGGCCATGGACTCGCCGAACAGAATGATCCCGGCGATGACCGTACCGACTGCGCCTACGCCg                                                          <  1:48091/150‑1 (MQ=255)                                                                                       ggcgcactGCGAAAGGTGTTAGCTGGGGCTGACTTTCATGGCGACAGGACCGCAGGCGAATAGCGCCACACTCACCAGCCGCACCAGGGCCATGTACTCGCCGAACAGCATTATCTCGGCGATGACCGTACCAACTGCGCCTACGCCgga                                                        >  2:51585/7‑149 (MQ=255)                                                                                                 gATAGGTGTTAGCTGGCGCTTACTTTCAGGCCGACAAGGCCGCAGACGATCAGCGCCACACTGACCAGCCGCACCAGGGCCATGGAATCGCCGAACAGAATGATCCCGGCGATGACCGTACCGACTGCGCCTACGCCGGTCCAGATGGCa                                              <  1:282478/150‑1 (MQ=255)                                                                                                      gggTTAGCTGGCGCTGACTTTCAGGCCGACAAGGCCGCAGACGATCAGCGCCACACTGACCAGCCGCACCAGGGCCATGGACTCGCCGAACAGAATGATCCCGGCGATGACCGTACCGACTGCGCCTACGCCGGTCCAGATGGCATAGGc                                         >  1:577561/1‑150 (MQ=255)                                                                                                       ggTTAGCTGGCGCTGACTTTCAGGCCGACAAGGCCGCAGACGATCAGCGCCACACTGACCAGCCGCACCAGGGCCATGGACTCGCCGAACAGAATGATCCCGGCGATGACCGTACCGACTGCGCCTACGCCGGTCCAGATGGCATAGGCg                                        >  1:465815/1‑150 (MQ=255)                                                                                                          tAGCTGGCGCTGACTTTCAGGCCGACAAGGCCGCAGACGATCAGCGCCACACTGACCAGCCGCACCAGGGCCATGGACTCGCCGAACAGAATGATCCCGGCGATGACCGTACCGACTGCGCCTACGCCGGTCCAGATGGCATAGGCGGTg                                     <  2:560070/150‑1 (MQ=255)                                                                                                             cTGGCGCTGACTTTCAGGCCGACAAGGCCGCAGACGAtcagcgccagctaacccctatcgcagagggccgcgcaggcggctgacctgttcgcgcaacacttcaggctgcgccgcctccaccgggatggcggcgcctgccacgatggtcac                                  <  1:494416‑M2/150‑114 (MQ=255)                                                                                                             cTGGCGCTGACTTTCAGGCCGACAAGGCCGCAGACGAtcagcgccagctaacccctatcgcagagggccgcgcaggcggctgacctgttcgcgcaacacttcaggctgcgccgcctccaccgggatggcggcgcctgccacgatggtcac                                  >  2:494416‑M2/1‑37 (MQ=255)                                                                                                              tGGCGCTGACTTTCAGGCCGACAAGGCCGCAGACGAtcagcgccagctaacccctatcgcagagggccgcgcaggcggctgacctgttcgcgcaacacttcaggctgcgccgcctccaccgggatggcggcgcctgc                                              <  2:399923‑M2/137‑102 (MQ=255)                                                                                                              tGGCGCTGACTTTCAGGCCGACAAGGCCGCAGACGAtcagcgccagctaacccctatcgcagagggccgcgcaggcggctgacctgttcgcgcaacacttcaggctgcgccgcctccaccgggatggcggcgcctgc                                              >  1:399923‑M2/1‑36 (MQ=255)                                                                                                                      aCTTTCAGGCCGACAAGGCCGCAGACGATCAGCGCCACACTGACCAGCCGCACCAGGGCCATGGACTCGCCGAACAGAATGATCCCGGCGATGACCGTACCGACTGCGCCTACGCCGGTCCAGATGGCATAGGCGGTGCCCAGCGGCAGt                         >  1:582843/1‑150 (MQ=255)                                                                                                                        tttCAGGCCGACAAGGCCGCAGACGATCAGCGCCACACTGACCAGCCGCACCAGGGCCATGGACTCGCCGAACAGAATGATCCCGGCGATGACCGTACCGACTGCGCCTACGCCGGTCCAGATGGCATAGGCGGTGCCCAGCGGCAGTTc                       >  2:496098/1‑150 (MQ=255)                                                                                                                            aGGCCGACAAGGCCGCAGACGATCAGCGCCACACTGACCAGCCGCACCAGGGCCATGGACTCGCCGAACAGAATGATCCCGGCGATGACCGTACCGACTGCGCCTACGCCGGTCCAGATGGCATAGGCGGTGCCCAGCGGCAGTTCCTTc                   <  1:567188/150‑1 (MQ=255)                                                                                                                                             gACGATCAGCGCCACACTGCCCAGCCGCACCAGGGCCATGGACTCGCCGAACAGAATGATCCCGGCGATGACCGTACCGACTGCGCCTACGCCGGTCCAGATGGCATAGGCGGTGCAAAGTGGCAGTTCCTTCATGGCcaggcccagcag  <  1:173594/150‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                  CGCGGGTGACCATCGTGGCAGGCGCCGCCATCCCGGTGGAGGCGGCGCAGCCTGAAGTGTTGCGCGAACAGGTCAGCCGCCTGCGCGGCCCTCTGCGATAGGGGTTAGCTGGCGCTGACTTTCAGGCCGACAAGGCCGCAGACGATCAGCGCCACACTGACCAGCCGCACCAGGGCCATGGACTCGCCGAACAGAATGATCCCGGCGATGACCGTACCGACTGCGCCTACGCCGGTCCAGATGGCATAGGCGGTGCCCAGCGGCAGTTCCTTCATGGCCAGGCCCAGCAG  >  NC_002947/1896694‑1896983

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.