New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2446426 =	19 (0.820)	3 (0.140)	3/240	NT	13.9%	coding (657/708 nt)	PP_2144	TetR family transcriptional regulator
	?	NC_002947	2446446 =	19 (0.860)					coding (677/708 nt)	PP_2144	TetR family transcriptional regulator

GGCGATTGCCGAGACCGACTTCGGCATCAACACCTCGATCGAGCAGGTGATGCGCCTGATGGTGCCGTTCCTGGCGGCAGGCATGCGCGCTGACAGCGGTGTGACCGACGAGGCGATGGCCACTGCGCAGCTGCGCCCGCGCACAAAGACCGGTTCGGCTACCGCCAAGGCCTGAAGGCTGGGCGTGGCGGGGCGCTTCCGCTAAGCTAGCGCCCATGCCCGATTTCGATCTACTTCGCATCTCCCTTGCTGACCAGTGCCTGTATGGCTTTGC  >  NC_002947/2446303‑2446576                                                                                                                                                |                                                                                                                                   ggCGATTGCCGAGACCGACTTCGGCATCAACACCTCGATCGAGCAGGTGATGCGCCTGATGGTGCCGTTCCTGGCGGCAGGCATGCGCGCTGACAGCGGTGTGACCGACGAGGCGATGGCCACTGCGCAGCTGCGCCCGCGCACAAAGAc                                                                                                                              <  2:495899/150‑1 (MQ=255)      ttGCCGAGACCGACTTCGGCATCAACACCTCGATCGAGCAGGTGATGCGCCTGATGGTGCCGTTCCTGGCGGCAGGCATGCGCGCTGACAGCGGTGTGACCGACGAGGCGATGGCCACTGCGCAGCTGCGCCCGCGCACAAAGACCGGtt                                                                                                                         >  1:370810/1‑150 (MQ=255)             gtcagcaagggagatgcgaagtagatcgaaatcgggcatgggcgctagcttagcggaagcgccccgccacgcccagccttcaggccttggcggtagccgaaccggtctttgtgcgcagctgcgcccgcgcaCAAAGACCGGTTCGGCTAc                                                                                                                  <  2:202678‑M2/19‑1 (MQ=255)                    ttCGGCATCAACACCTCGATCGAGCAGGTGATGCGCCTGATGGTGCCGTTCCTGGCGGCAGGCATGCGCGCTGACAGCGGTGTGACCGACGAGGCGATGGCCACTGCGCAGCTGCGCCCGCGCACAAAGACCGGTTCGGCTACCGCCAAg                                                                                                           >  2:250544/1‑150 (MQ=255)                         cATCAACACCTCGATCGAGCAGGTGATGCGCCTGATGGTGCCGTTCCTGGCGGCAGGCATGCGCGCTGACAGCGGTGTGACCGACGAGGCGATGGCCACTGCGCAGCTGCGCCCGCGCACAAAGACCGGTTCGGCTACCGCCAAGGCCTg                                                                                                      >  1:58512/1‑150 (MQ=255)                              acacCTCGATCGAGCAGGTGATGCGCCTGATGGTGCCTTTCCTGGCGGCAGGCATGCGCGCTGACAGCGGTGTGACCGACGAGGCGATGGCCACTGCGCAGCTGCGCCCGCGCACAAAGACCGGTTCGGCTACCGCCAAGACCTGAAGGc                                                                                                 >  1:276257/1‑150 (MQ=255)                                 ccTCGATCGAGCAGGTGATGCGCCTGATGGTGCCGTTCCTGGCGGCAGGCATGCGCGCTGACAGCGGTGTGACCGACGAGGCGATGGCCACTGCGCAGCTGCGCCCGCGCACAAAGACCGGTTCGGCTACCGCCAAGGCCTGAAGGCTgg                                                                                              <  1:350969/150‑1 (MQ=255)                                   tcgatcgaGCAGGTGATGCGCCTGATGGTGCCGTTCCTGGCGGCAGGCATGCGCGCTGACAGCGGTGTGACCGACGAGGCGATGGCCACTGCGCAGCTGCGCCCGCGCACAAAGACCGGTTCGGCTACCGCCAAGGCCTGAAGGCTGGGc                                                                                            >  1:371907/1‑150 (MQ=255)                                       tcgaGCAGGTGATGCGCCTGATGGTGCCGTTCCTGGCGGCAGGCATGCGCGCTGACAGCGGTGTGACCGACGAGGCGATGGCCACTGCGCAGCTGCGCCCGCGCACAAAGACCGGTTCGGCTACCGCCAAGGCCTGAAGGCTGGGCGTgg                                                                                        <  2:58512/150‑1 (MQ=255)                                          aGCAGGTGATGCGCCTGATGGTGCCGTTCCTGGCGGCAGGCATGCGCGCTGACAGCGGTGTGACCGACGAGGCGATGGCCACTGCGCAGCTGCGCCCGCGCACAAAGACCGGTTCGGCTACCGCCAAGGCCTGAAGGCTGGGCGTGGCgg                                                                                     <  1:455851/150‑1 (MQ=255)                                           gCAGGTGATGCGCCTGATGGTGCCGTTCCTGGCGGCAGGCATGCGCGCTGACAGCGGTGTGACCGACGAGGCGATGGCCACTGCGCAGCTGCGCCCGCGCACAAAGACCGGTTCGGCTACCGCCAAGGCCTGAAGGCTGGGCGTGGCggg                                                                                    <  2:371907/150‑1 (MQ=255)                                                      gcgctagcttagcggaagcgccccgccacgcccagccttcaggccttggcggtagccgaaccggtctttgTGCGCAGCTGCGCCCGCGCACaaa                                                                                                                                 >  1:251852‑M1/71‑94 (MQ=255)                                                      gcgctagcttagcggaagcgccccgccacgcccagccttcaggccttggcggtagccgaaccggtctttgTGCGCAGCTGCGCCCGCGCACaaa                                                                                                                                 <  2:251852‑M1/24‑1 (MQ=255)                                                              gTGCCGTTCCTGGCGGCAGGCCTGCGCGCTCACAGCGGTGTGACCGACGAGGCGATGGCCACTGCGCAGCTGCGCCCGCGCACAAAGACCGGTTCGGCTACCGCCAAGGCCTGAAGGCTGGGCGTGGCGGGGCGCTTCCGCTAAGCTAgc                                                                 >  2:172330/1‑150 (MQ=255)                                                                                   aTGCGCGCTGACAGCGGTGTGACCGACGAGGCGATGGCCACTGCGCAGCTGCGCCCGCGCACAAAGACCGGTTCGGCTACCGCCAAGGCCTGAAGGCTGGGCGTGGCGGGGCTCTGCCGCTAAGCTAGCGCCCATGCCCGATTTCGATCt                                            >  1:494390/1‑150 (MQ=255)                                                                                   aTGCGCGCTGACAGCGGTGTGACCGACGAGGCGATGGCCACTGCGCAGCTGCGCCCGCGCACAAAGACCGGTTCGGCTACCGCCAAGGCCTGAAGGCTGGGCGTGGCGGGGCGCTTCCGCTAAGCTAGCGCCCATGCCCGATTTCGATCt                                            >  1:185936/1‑150 (MQ=255)                                                                                                gCGGTGTGACCGACGAGGCGATGGCCACTGCGCAGCTGCGCCCGCGCACAAAGACCGGTTCGGCTACCGCCaa                                                                                                            >  1:263086/1‑73 (MQ=255)                                                                                                gCGGTGTGACCGACGAGGCGATGGCCACTGCGCAGCTGCGCCCGCGCACAAAGACCGGTTCGGCTACCGCCaa                                                                                                            <  2:263086/73‑1 (MQ=255)                                                                                                    tgtgACCGACGAGGCGATGGCCACTGCGCAGCTGCGCCCGCGCACAAAGACCGGTTCGGCTACCGCCAAGGCCTGAAGGCTGGGCGTGGCGGGGCGCTTCCGCTAAGCTAGCGCCCATGCCCGATTTCGATCTACTTCGCATCTCCCTTg                           >  2:526633/1‑150 (MQ=255)                                                                                                        aCCGACGAGGCGATGGCCACTGAGCAGCTGCGCCCGCGCACAAAGACCGGTGCGGCTACCGCCAAGGCCTGAAGGCTGGGCGGGGCGGGGCGCGTCCGCTAAGGTAGCGCCCATGCCCGATTTCGAGCTACTTCAGATCTCCCTTGCTGa                       >  1:295723/1‑150 (MQ=255)                                                                                                         gtagccgaaccggtctttgTGCGCGGGCGCAGCTGCGCACAAAGACCGGTTCGGCTACCGCCAAGGCCTGAAGGCTGGGCGTGGCGGGGCGCTTCCGCTAAGCTAGCGCCCATGCCCGATTTCGATCTACTTCGCATCTCCCTTGCTGAc                      <  2:202678‑M1/131‑1 (MQ=255)                                                                                                         ccGACGAGGCGATGGCCACTGCGCAGCTGCGCCCGCGCACAAAGACCGGTTCGGCTACCGCCAAGGCCTGAAGGCTGGGCGTGGCGGGGCGCTTCCGCTAAGCTAGCGCCCATGCCCGATTTCGATCTACTTCGCATCTCCCTTGCTGAc                      >  1:231457/1‑150 (MQ=255)                                                                                                                       gCCACTGCGCAGCTGCGCCCGCGCACAAAGACCGGTTCGGCTACCGCCAAGGCCTGAAGGCTGGGCGTGGCGGGGCGCTTCCGCTAAGCTAGCGCCCATGCCCGATTTCGATCTACTTCGCATCTCCCTTGCTGACCAGTGCCTGTATgg        <  1:172330/150‑1 (MQ=255)                                                                                                                        tttgtgcgcgggcgcagctgcgcaCAAAGACCGGTTCGGCTACCGCCAAGGCCTGAAGGCTGGGCGTGGCGGGGCGCTTCCGCTAAGCTAgcgc                                                               <  2:251852‑M2/70‑1 (MQ=255)                                                                                                                        tttgtgcgcgggcgcagctgcgcaCAAAGACCGGTTCGGCTACCGCCAAGGCCTGAAGGCTGGGCGTGGCGGGGCGCTTCCGCTAAGCTAgcgc                                                               >  1:251852‑M2/25‑94 (MQ=255)                                                                                                                             GCGCAGCTGCGCCCGCGCACAAAGACCGGTTCGGCTACCGCCAAGGCCTGAAGGCTGGGCGTGGCGGGGCGCTTCCGCTAAGCTAGCGCCCATGCCCGATTTCGATCTACTTCGCATCTCCCTTGCTGACCAGTGCCTGTATGGCTTTGc  >  2:231457‑M1/1‑150 (MQ=255)                                                                                                                                                |                                                                                                                                   GGCGATTGCCGAGACCGACTTCGGCATCAACACCTCGATCGAGCAGGTGATGCGCCTGATGGTGCCGTTCCTGGCGGCAGGCATGCGCGCTGACAGCGGTGTGACCGACGAGGCGATGGCCACTGCGCAGCTGCGCCCGCGCACAAAGACCGGTTCGGCTACCGCCAAGGCCTGAAGGCTGGGCGTGGCGGGGCGCTTCCGCTAAGCTAGCGCCCATGCCCGATTTCGATCTACTTCGCATCTCCCTTGCTGACCAGTGCCTGTATGGCTTTGC  >  NC_002947/2446303‑2446576

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.