New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3460753	27 (1.170)	3 (0.140)	3/240	NT	10.2%	coding (665/1017 nt)	PP_3076	ABC transporter permease
	?	NC_002947	= 3460786	27 (1.220)					coding (632/1017 nt)	PP_3076	ABC transporter permease

ATGGCATTGGGCAAGATATGCCGCAACATCACCTGACTGTCCGGTAACCCCAACGCCCGCGCTGCCTTTACATACTCCAGGTTGCGCCCACGCAGGAACTCGGCGCGCACGACGTCGACCAGGGTCAGCCAGGAGAACAGCGCCATGATCCCCAGCAGCCACCAGAAATCCGGCTCGACGAAACCGCTGAGGATGATCAACAGATACAACACTGGCAACCCCGACCATACTTCCAGCAAGCGCTGGCCGAACAGGTCGACCCAGCCCCCGTGGTAGCCTTGCAGGGCG  >  NC_002947/3460648‑3460935                                                                                                                                           |                                                                                                                                                      aTGGCATTGGGCAAGATATGCCGCAACATCACCTGACTGTCCGGTAACCCCAACGCCCGCGCTGCCTTTACATACTCCAGGTTGCGCCCACGCAGGAACTCGGCGCGCACGACGTCGACCAGGGTCAGCCAGGAGAACAGCGCCATGa                                                                                                                                              <  1:163827/148‑1 (MQ=255) aTGGCATTGGGCAAGATATGCCGCAACATCACCTGACTGTCCGGTAACCCCAACGCCCGCGCTGCCTTTACATACTCCAGGTTGCGCCCACGCAGGAACTCGGCGCGCACGACGTCGACCAGGGTCAGCCAGGAGAACAGCGCCATGa                                                                                                                                              >  2:163827/1‑148 (MQ=255)        tGGGCAAGATATGCCGCAACATCACCTGACTGTCCGGTAACCCCAACGCCCGCGCTGCCTTTACATACTCCAGGTTGCGCCCACGCAGGAACTCGGCGCGCACGACGTCGACCAGGGTCAGCCAGGAGAACAGCGCCATGATCCCcagca                                                                                                                                     <  2:430125/150‑1 (MQ=255)                     ccGCAACATCACCTGACTGTCCGGTAACCCCAACGCCCGCGCTGCCTTTACATACTCCAGGTTGCGCCCACGCAGGAACTCGGCGCGCACGACGTCGACCAGGGTCAGCCAGGAGAACAGCGCCATGATCCCCAGCAGCCACCAGAAATc                                                                                                                        >  2:238316/1‑150 (MQ=255)                      cGCAACATCACCTGACTGTCCGGTAACCCCAACGCCCGCGCTGCCTTTACATACTCCAGGTTGCGCCCACGCAGGAACTCGGCGCGCACGACGTCGACCAGGGTCAGCCAGGAGAACAGCGCCATGATCCCCAGCAGCCACCAGAAATcc                                                                                                                       >  1:70380/1‑150 (MQ=255)                                   gACTGTCCGGTAACCCCAACGCCCGCGCTGCCTTTACATACTCCAGGTTGCGCCCACGCAGGAACTCGGCGCGCACGACGTCGACCAGGGTCAGCCAGGAGAACAGCGCCATGATCCCCAGCAGCCACCAGAAATCCGGCTCGACGAAAc                                                                                                          >  2:125218/1‑150 (MQ=255)                                               aCCCCAACGCCCGCGCTGCCTTTACATACTCCAGGTTGCGCCCACGCAGGAACTCGGCGCGCACGACGTCGACCAGGGTCAGCCAGGAGAACAGCGCCATGATCCCCAGCAGCCACCAGAAATCCGGCTCGACGAAACCGCTGAGgatga                                                                                              <  2:70380/150‑1 (MQ=255)                                                 cccAACGCCCGCGCTGCCTTTACATACTCCAGGTTGCGCCCACGCAGGAACTCGGCGCGCACGACGTCGACCAGGGTCAGCCAGGAGAACAGCGCCATGATCCCCAGCAGCCACCAGAAATCCGGCTCGACGAAACCGCTGAGGATGATc                                                                                            >  1:279846/1‑150 (MQ=255)                                                 cccAACGCCCGCGCTGCCTTTACATACTCCAGGTTGCGCCCACGCAGGAACTCGGCGCGCACGACGTCGACCAGGGTCAGCCAGGAGAACAGCGCCATGATCCCCAGCAGCCACCAGAAATCCGGCTCGACGAAACCGCTGAGGATGATc                                                                                            <  2:217911/150‑1 (MQ=255)                                                 cccAACGCCCGCGCTGCCTTTACATACTCCAGGTTGCGCCCACGCAGGAACTCGGCGCGCACGACGTCGACCAGGGTCAGCCAGGAGAACAGCGCCATGATCCCCAGCAGCCACCAGAAATCCGGCTCGACGAAACCGCTGAGGATGATc                                                                                            >  1:562054/1‑150 (MQ=255)                                                   cAACGCCCGCGCTGCCTTTACATACTCCAGGTTGCGCCCACGCAGGAACTCGGCGCGCACGACGTCGACCAGGGTCAGCCAGGAGAACAGCGCCATGATCCCCAGCAGCCACCAGAAATCCGGCTCGACGAAACCGCTGAGGATGATCaa                                                                                          <  1:465867/150‑1 (MQ=255)                                                                 ccTTTACATACTCCAGGTTGCGCCCACGCAGGAACTCGGCGCGCACGACGTCGACCAGGGTCAGCCAGGAGAACAGCGCCATGATCCCCAGCAGCCACCAGAAATCCGGCTCGACGAAACCGCTGAGGATGATCAACAGATACAACACTg                                                                            <  1:125218/150‑1 (MQ=255)                                                                 ccTTTACATACTCCAGGTTGCGCCCACGCAGGAACTCGGCGCGCACGACGTCGACCAGGGTCAGCCAGGAGAACAGCGCCATGATCCCCAGCAGCCACCAGAAATCCGGCTCGACGAAACCGCTGAGGATGATCAACAGATACAACACTg                                                                            <  2:554146/150‑1 (MQ=255)                                                                 ccTTTACATACTCCAGGTTGCGCCCACGCAGGAACTCGGCGCGCACGACGTCGACCAGGGTCAGCCAGGAGAACAGCGCCATGATCCCCAGCAGCCACCAGAAATCCGGCTCGACGAAACCGCTGAGGATGATCAACAGATACAACACTg                                                                            >  2:449036/1‑150 (MQ=255)                                                                   tttACATACTCCAGGTTGCGCCCACGCAGGAACTCGGCGCGCACGACGTCGACCAGGGTCAGCCAGGAGAACAGCGCCATGATCCCCAGCAGCCACCAGAAATCCGGCTCGACGAAACCGCTGAGGATGATCAACAGATacaa                                                                                 >  2:89442/1‑143 (MQ=255)                                                                   tttACATACTCCAGGTTGCGCCCACGCAGGAACTCGGCGCGCACGACGTCGACCAGGGTCAGCCAGGAGAACAGCGCCATGATCCCCAGCAGCCACCAGAAATCCGGCTCGACGAAACCGCTGAGGATGATCAACAGATacaa                                                                                 <  1:89442/143‑1 (MQ=255)                                                                   tttACATACTCCAGGTTGCGCCCACGCAGGAACTCGGCGCGCACGACGTCGACCAGGGTCAGCCAGGAGAACAGCGCCATGATCCCCAGCAGCCACCAGAAATCCGGCTCGACGAAACCGCTGAGGATGATCAACAGATACAACACTGGc                                                                          >  2:140320/1‑150 (MQ=255)                                                                                        ccACGCAGGAACTCGGCGCGCACGACGTCGACCAGGGTCAGCCAGGAGAACAGCGCCATGATCCCCAGCAGCCACCAGAAATcc                                                                                                                       <  2:400503/84‑1 (MQ=255)                                                                                        ccACGCAGGAACTCGGCGCGCACGACGTCGACCAGGGTCAGCCAGGAGAACAGCGCCATGATCCCCAGCAGCCACCAGAAATcc                                                                                                                       >  1:400503/1‑84 (MQ=255)                                                                                        ccACGCAGGAACTCGGCGCGCACGACGTCGACCAGGGTCAGCCAGGAGAACAGCGCCATGATCCCCAGCAGCCACCAGAAATCCGGCTCGACGAAACCGCTGAGGATGATCAACAGATACAACACTGGCAACCCCGACCATACTTCCAGc                                                     >  2:544112/1‑150 (MQ=255)                                                                                            gCAGGAACTCGGCGCGCACGACGTCGACCAGGGTCAGCCAGGAGAACAGCGCCATGATCCCCAGCAGCCACCAGAAATCCGGCTCGACGAAACCGCTGAGGATGATCAACAGATACAACACTGGCAACCCCGACCATACTTCCAGCAAgc                                                 >  1:376770/1‑150 (MQ=255)                                                                                              aGGAACTCGGCGCGCACGACGTCGACCAGGGTCAGCCAGGAGAACAgcgccgagttcctgcgtgggcgcaacctggagtatgtaaaggcagcgcgggcgttggggttaccggacagtcaggtgatgttgcggcatatcttgcccaatgcc                                               <  1:74380‑M2/150‑105 (MQ=255)                                                                                                gAACTCGGCGCGCACGACGTCGACCAGGGTCAGCCAGGAGAACAGCGCCATGATCCCCAGCAGCCACCAGAAATCCGGCTCGACGAAACCGCTGAGGATGATCAACAGATACAACACTGGCAACCCCGACCATACTTCCAGCAAGCGCTg                                             <  1:238316/150‑1 (MQ=255)                                                                                                    tCGGCGCGCACGACGTCGACCAGGGTCAGCCAGGAGAACAgcgccgagttcctgcgtgggcgcaacctggagtatgtaaaggcagcgcgggcgttggggttaccggacagtcaggtgatgttgcgg                                                                 >  2:231324‑M2/1‑40 (MQ=255)                                                                                                    tCGGCGCGCACGACGTCGACCAGGGTCAGCCAGGAGAACAgcgccgagttcctgcgtgggcgcaacctggagtatgtaaaggcagcgcgggcgttggggttaccggacagtcaggtgatgttgcgg                                                                 <  1:231324‑M2/126‑87 (MQ=255)                                                                                                            cACGACGTCGACCAGGGTCAGCCAGGAGAACAGCGCCATGATCCCCAGCAGCCACCAGAAATCCGGCTCGACGAAACCGCTGAGGATGATCAACAGATACAACACTGGCAACCCCGACCATACTTCCAGCAAGCGCTGGCCGAACAGGTc                                 <  2:586623/150‑1 (MQ=255)                                                                                                               gacgTCGACCAGGGTCAGCCAGGAGAACAGCGCCATGATCCCCAGCAGCCACCAGAAATCCGGCTCGACGAAACCGCTGAGGATGATCAACAGATACAACACTGGCAACCCCGACCATACTTCCAGCAAGCGCTGGCCGAACAGGTAGaa                              >  2:373/1‑149 (MQ=255)                                                                                                                acgTCGACCAGGGTCAGCCAGGAGAACAGCGCCATGATCCCCAGCAGCCACCAGAAATCCGGCTCGACGAAACCGCTGAGGATGATCAACAGATACAACGCTGGCAACCCCGACCATACTGCCAGGAAGCGCTGGCCGAACAGGTCGAcc                             <  1:449036/150‑1 (MQ=255)                                                                                                                  gTCGACCAGGGTCAGCCAGGAGAACAGCGCCATGATCCCCAGCAGCCACCAGAAATCCGGCTCGACGAAACCGCTGAGGATGATCAACAGATACAACACTGGCAACCCCGACCATACTTCCAGCAAGCGCTGGCCGAACAGGTCGACCCa                           >  2:437676/1‑150 (MQ=255)                                                                                                                   tCGACCAGGGTCAGCCAGGAGAACAGCGCCATGATCCCCAGCAGccacca                                                                                                                              <  1:489898/50‑1 (MQ=255)                                                                                                                   tCGACCAGGGTCAGCCAGGAGAACAGCGCCATGATCCCCAGCAGccacca                                                                                                                              >  2:489898/1‑50 (MQ=255)                                                                                                                       ccAGGGTCAGCCAGGAGAACAGCGCCATGATCCCCAGCAGCCACCAGAAATCCGGCTCGACGAAACCGCTGAGGATGATCAACAGATACAACACTGGCAACCCCGACCATACTTCCAGCAAGCGCTGGCCGAACAGGTCGACCCAGcccc                      >  1:255253/1‑150 (MQ=255)                                                                                                                                          cAGCGCCATGATCCCCAGCAGCCACCAGAAATCCGGCTCGACGAAACCGCTGAGGATGATCAACAGATACAACACTGGCAACCCCGACCATACTTCCAGCAAGCGCTGGCCGAACAGGTCGACCCAGCCCCCGTGGTAGCCTTGCAGGgc   <  2:255253/150‑1 (MQ=255)                                                                                                                                           aGCGCCATGATCCCCAGCAGCCCCCAGAAATCCGGCTCGACGAAACCGCTGAGGATGATCAACAGATACAACACTGGCAACCCCGACCATACTTCCAGCAAGCGCTGGCCGAACAGGTCGACCCAGCCCCCGTGGTAGCCTTGCAGGgcg  >  2:159009/1‑150 (MQ=255)                                                                                                                                           |                                                                                                                                                      ATGGCATTGGGCAAGATATGCCGCAACATCACCTGACTGTCCGGTAACCCCAACGCCCGCGCTGCCTTTACATACTCCAGGTTGCGCCCACGCAGGAACTCGGCGCGCACGACGTCGACCAGGGTCAGCCAGGAGAACAGCGCCATGATCCCCAGCAGCCACCAGAAATCCGGCTCGACGAAACCGCTGAGGATGATCAACAGATACAACACTGGCAACCCCGACCATACTTCCAGCAAGCGCTGGCCGAACAGGTCGACCCAGCCCCCGTGGTAGCCTTGCAGGGCG  >  NC_002947/3460648‑3460935

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.