New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4267344 =	28 (1.210)	5 (0.220)	5/242	NT	18.1%	coding (558/1254 nt)	galP‑IV	porin‑like protein
	?	NC_002947	4267424 =	18 (0.800)					coding (478/1254 nt)	galP‑IV	porin‑like protein

TAGTTGAAGCCGTCCGAGGTGACCCCGGGCGCGGCCCAGGCAGATAGGTCCTGCATGTCCGAAGAGTGGCGCAGGCTCACCTCGCGGTACTGGCCGGCCTGCAGGCTCAGGCCTTCGATTTCCCGCGAGTCGAGCATGGCACCACGGAAGGTCTGCGGCAGCAGGCGGCCATCGTCGTAACGCAACAGCGGAATATCCGGCAACAACTCCCCCACCTTCAGCTCGGTCGCGGACATACGCAGCTTCGCCGCCAGCCCGGCCCGACCGTAGTCGTCGGCCGCTCGCCCGTCATC  >  NC_002947/4267279‑4267571                                                                                                                                                  |                                                                                                                                                    tAGTTGAAGCCGTCCGAGGTGCCACCGGGTGCGGCCCAGGCAGATAGGTCCTGCATGTCCGAAGAGTGGCGCAGGCTCACCTCGCGGTACTGGCCGGCCTGCAGGCTCAGGCCTTCGATTTCCCGCGAGTCGAGCATGGCACCACGGAAg                                                                                                                                                 <  2:539432/150‑1 (MQ=255) tAGTTGAAGCCGTCCGAGGTGACCCCGGGCGCGGCCCAGGCAGATAGGTCCTGCATGTCCGAAGAGTGGCGCAGGCTCACCTCGCGGTACTGGCCGGCCTGCAGGCTCAGGCCTTCGATTTCCCGCGAGTCGAGCATGGCACCACGGAAg                                                                                                                                                 <  2:301611/150‑1 (MQ=255) ggagttgttgccggatattgggctgttgcgttacgacgatggccgcctgctgccgcagcccttccGTGGCGCAGGCTCACCTCGCGGTACTGGCCGGCCTGCAGGCTCAGGCCTTCGATTTCCCGCGAGTCGAGCATGGCACCACGGAAg                                                                                                                                                 >  1:188880‑M1/66‑150 (MQ=255)   gTTGAAGCCGTCCGAGGTGACCCCGGGCGCGGCCCAGGCAGATAGGTCCTGCATGTCCGAAGAGTGGCGCAGGCTCACCTCGCGGTACTGGCCGGCCTGCAGGCTGAGGACTTAGATGCCCCGCGAGGCGAGCAGGGCACCACGGAAGGt                                                                                                                                               >  2:529679/1‑150 (MQ=255)            cggatattccgctgttgcgttacgacgatggccgcctgctgccgcagaccttccGTGGCGCAGGCTCACCTCGCGGTACTGGCCGGCCTGCAGGCTCAGGCCTTCGATTTCCCGCGAGTCGAGCATGGCACCACGGAAGGTCTGCGgcag                                                                                                                                      >  2:454233‑M1/55‑150 (MQ=255)                        cccGGGCGCGGCCCAGGCAGATAGGTCCTGCATGTCCGAAGAGTGGCGCAGGCTCACCTCGCGGTACTGGCCGGCCTGCAGGCTCAGGCCTTCGATTTCCCGCGAGTCGAGCATGGAACGACGGAAGGTACAGGGCAGCAGGCGGCCAtc                                                                                                                          >  1:188842/1‑150 (MQ=255)                               gcgGCCCAGGCAGATAGGTCCTGCATGTCCGAAGAGTGGCGCAGGCTCACCTCGCGGTACTGGCCGGCCTGCAGGCTCAGGCCTTCGATTTCCCGCGAGTCGAGCATGGCACCACGGAAGGTCTGCGGCAGCAGGCGGCCATCGTCGTaa                                                                                                                   <  1:93027/150‑1 (MQ=255)                                 ggCCCAGGCAGATAGGTCCTGCATGTCCGAAGAGTGGCGCAGGCTCACCTCGCGGTACTGGCCGGCCTGCAGGCTCAGGCCTTCGATTTCCCGCGAGTCGAGCATGGCACCACGGCAGGTCTGCGGCAGCAGGCGGCCATCGTCGTAACg                                                                                                                 >  2:230845/1‑150 (MQ=255)                                   cccAGGCAGATAGGTCCTGCATGTCCGAAGAGTGGCGCAGGCTCACCTCGCGATACTGGCCGGCCTGCAGGCTCAGGCCTTCGATTTCCCGCGAGTCGAGCATGGCACCACGGAAGGTCTGCGGCAGCAGGCGGCCATCGTCGTAACGCa                                                                                                               >  2:188417/1‑150 (MQ=255)                                      aGGCAGATAGGTCCTGCATGTCCGAAGAGTGGCGCAGGCTCACCTCGCGGTACTGGCCGGCCTGCAGGCTCAGGCCTTCGATTTCCCGCGAGTCGAGCATGGCACCACGGAAGGTCTGCGGCAGCAGGCGGCCATCGTCGTAACGCAACa                                                                                                            >  1:581292/1‑150 (MQ=255)                                              aGGTCCTGCATGTCCGAAGAGTGGCGCAGGCTCACCTCGCGGTACTGGCCGGCCTGCAGGCTCAGGCCTTCGATTTCCCGCGAGTCGAGCATGGCACCACGGAAGGTCTGCGGCAGCAGGCGGCCATCGTCGTAACGCAACAGCGGAata                                                                                                    >  2:45364/1‑150 (MQ=255)                                                gTCCTGCATGTCCGAAGAGTGGCGCAGGCTCACCTCGCGGTACTGGCCGGCCTGCAGGCTCAGGCCTTCGATTTCCCGCGAGTTGAGCATGGCACCACGGAAGGTCTGCGGCAGCAGGCGGCCATCGTCGTAACGCAACAGCGGAATATc                                                                                                  >  2:551449/1‑150 (MQ=255)                                                  ctgccgcagaccttccgtggtgccatgctcgactcgcgggaaatcgaaggcctgagcctgcaggccggccagtaccgcgaggtgagcctgcgccacGGAAGGTCTGCGGCAGCAGGCGGCCATCGTCGTAACGCAACAGCGGAATATCCg                                                                                                >  2:454233‑M2/97‑150 (MQ=255)                                                            cGAAGAGTGGCGCAGGCTCACCTCGCGGTACTGGCCGGCCTGCAGGCTCAGGCCTTCGATTTCCCGCGAGTCGAGCATGGCACCACGGAAGGTCTGCGGCAGCAGGCGGCCATCGTCGTAACGCAACAGCGGAATATCCGGCAACAACTc                                                                                      <  1:529679/150‑1 (MQ=255)                                                             gAAGAGTGGCGCAGGCTCACCTCGCGGTACTGGCCGGCCTGCAGGCTCAGGCCTTCGATTTCCCGCGAGTCGAGCATGGCACCACGGAAGGTCTGCGGCAGCAGGCGGCCATCGTCGTAACGCAACAGCGGAATATCCGGCAACAACTcc                                                                                     >  1:199973/1‑150 (MQ=255)                                                             cttccgtggtgccatgctcgactcgcgggaaatcgaaggcctgagcctgcaggccggccagtaccgcgaggtgagcctgcgccacGGAAGGGCTGCGGCAGCAGGCGGCCATCGTCGTAACGCAACAGCCCAATATCCGGCAACAACTcc                                                                                     >  1:188880‑M2/86‑150 (MQ=255)                                                                        catgctcgactcgcgggaaatcgaaggcctgagcctgcaggccggccagtaccgcgaggtgagcatggcaccacGGAAGGTCTGCGGCAGCAGGCGGCCATCGTCGTAACGCAACAGCGGAATATCCGGCAACAACTCCCCCAc                                                                                <  2:281243‑M2/70‑1 (MQ=255)                                                                        catgctcgactcgcgggaaatcgaaggcctgagcctgcaggccggccagtaccgcgaggtgagcatggcaccacGGAAGGTCTGCGGCAGCAGGCGGCCATCGTCGTAACGCAACAGCGGAATATCCGGCAACAACTCCCCCAc                                                                                >  1:281243‑M2/75‑144 (MQ=255)                                                                                    gcgGTACTGGCCGGCCTGCAGGCTCAGGCCTTCGATTTACTTCGAGTCGAGCATGGCACCACGGAAGGTCTGCGGCAGCAGGCGGCCATCGTCGTAACGCAACAGCGGAATATCCGGCAACAACTCCCCCACCTTCAGCTCGGTCGCGGa                                                              <  1:162684/150‑1 (MQ=255)                                                                                               cggccTGCAGGCTCAGGCCTTCGATTTCCCGCGAGTCGAGCATGGCACCACGGAAGGTCTGCGGCAGCAGGCGGCCATCGTCGTAACGCAACAGCg                                                                                                         >  2:463746/1‑96 (MQ=255)                                                                                               cggccTGCAGGCTCAGGCCTTCGATTTCCCGCGAGTCGAGCATGGCACCACGGAAGGTCTGCGGCAGCAGGCGGCCATCGTCGTAACGCAACAGCg                                                                                                         <  1:463746/96‑1 (MQ=255)                                                                                                 gccTGCAGGCTCAGGCCTTCGATTTCCCGCGAGTCGAGCATGGCACCACGGAAGGTCTGCGGCAGCAGGCGGCCATCGTCGTAACGCAACAGCGGAATATCCGGCAACAACTCCCCCACCTTCAGCTCGGTCGCGGACATACGCAGCTTc                                                 <  2:113061/150‑1 (MQ=255)                                                                                                    cctgagcctgcaggccggccagtaccgcgaggtgagcctgcgccacGGAAGGTCTGCGGCAGCAGGCGGCCATCGTCGTAACGCAACAGCGGAATATCCGGCAACAACTCCCCCACCTTCAGCTCGGTCGCGGACATACGCAGCTTcgcc                                              <  1:454233‑M2/104‑1 (MQ=255)                                                                                                             aGGCCTTCGATTTCCCGCGAGTCGAGCATGGCACCACGGAAGGTCTGCGGCAGCAGGCGGCCATCGTCGTAACGCAACAGCGGAATATCCGGCAACAACTCCCCCACCTTCAGCTCGGTCGCGCACATACGCAGCTTCGCCGCCAgcccg                                     >  1:78/1‑150 (MQ=255)                                                                                                                  ttCGATTTCCCGCGAGTCGAGCATGGCACCACGGAAGGTCTGCGGCAGCAGGCGGCCATCGTCGTAACGCAACAGCGGAATATCCGGCAACAACTCCCCCACCTTCAGCTCGGTCGCGGACATACGCAGCTTCGCCGCCAgcccggcccg                                >  1:612220/1‑150 (MQ=255)                                                                                                                       tttCCCGCGAGTCGAGCATGGCACCACGGAAGGTCTGCGGCAGCAGGCGGCCATCGTCGTAACGCAACAGCGGAATATCCGGCAACAACTCCCCCACCTTCAGCTCGGTCGCGGACATACGCAGCTTCGCCGCCAGCCCGGCCCGACCGt                           >  1:207584/1‑150 (MQ=255)                                                                                                                            cgcgAGTCGAGCATGGCACCACGGAAGGTCTGCGGCAGCAGGCGGCCATCGTCGTAACGCAACAGCGGAATATACGGCAACAACTCCCCCACCTTCAGCTCGGTCGCGGACATACGCAGCTTCGCCGCCAGCCCGGCCCGACCGTAgtcg                      >  2:50256/1‑150 (MQ=255)                                                                                                                                          ggCACCACGGAAGGTCTGCGGCAGCAGGCGGCCATCGTCGTAACGCAACAGCGGAATATCCGGCAACAACTCCCCCACCTTCAGCTCGGTCGCGGACATACGCAGCTTCGCCGCCAGCCCGGCCCGACCGTAGTCGTCGGCCGCTCGccc        <  1:50256/150‑1 (MQ=255)                                                                                                                                           gCACCACGGAAGGTCTGCGGCAGCAGGCGGCCATCGTCGTAACGCAACAGCGGAATATCCGGCAACAACTCCCCCACCTTCAGCTCGGTCGCGGACATACGCAGCTTCGCCGCCAGCCCGGCCCGACCGTAGTCGTCGGCCGCTCGCCCg       >  2:514442/1‑150 (MQ=255)                                                                                                                                                acGGAAGGTCTGCGGCAGCAGGCGGCCATCGTCGTAACGCAACAGCGGAATATCCGGCAACAACTCCCCCACCTTCAGCTCGGTCGCGGACATACGCAGCTTCGCCGCCAGCCCGGCCCGACCGTAGTCGTCGGCCGCTCGCCCGTCATc  <  2:40129‑M2/148‑1 (MQ=255)                                                                                                                                                acGGAAGGTCTGCGGCAGCAGGCGGCCATCGTCGTAACGCAACAGCGGAATATCCGGCAACAACTCCCCCACCTTCAGCTCGGTCGCGGACATACGCAGCTTCGCCGCCAGCCCGGCCCGACCGTAGTCGTCGGCCGCTCGCCCGTCATc  <  1:514442‑M2/148‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                    TAGTTGAAGCCGTCCGAGGTGACCCCGGGCGCGGCCCAGGCAGATAGGTCCTGCATGTCCGAAGAGTGGCGCAGGCTCACCTCGCGGTACTGGCCGGCCTGCAGGCTCAGGCCTTCGATTTCCCGCGAGTCGAGCATGGCACCACGGAAGGTCTGCGGCAGCAGGCGGCCATCGTCGTAACGCAACAGCGGAATATCCGGCAACAACTCCCCCACCTTCAGCTCGGTCGCGGACATACGCAGCTTCGCCGCCAGCCCGGCCCGACCGTAGTCGTCGGCCGCTCGCCCGTCATC  >  NC_002947/4267279‑4267571

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.