New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4593882 =	38 (1.640)	3 (0.160)	3/202	NT	10.4%	intergenic (+142/+157)	mccA/PP_4068	methylcrotonyl‑CoA carboxylase biotin‑containing subunit alpha/Cro/CI family transcriptional regulator
	?	NC_002947	4593975 =	21 (1.120)					intergenic (+235/+64)	mccA/PP_4068	methylcrotonyl‑CoA carboxylase biotin‑containing subunit alpha/Cro/CI family transcriptional regulator

GGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACATCCGATCGGGGGTGGACACATGTTGGTGATTAGGCGCAGGCCGCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAACTTCCACCCGCCGTTCACCGTTGCCGCCACTACTCAAACCCTTTCAAAAAGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAGCGCCGGGTAGTTACTGTTCAA  >  NC_002947/4593831‑4594122                                                                                                                                                 |                                                                                                                                                    ggccTGCTAGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACATCCGATCGGGGGTGGACACATGTTGGTGATTAGGCGCAGGCCGCGTGTAGGAGCGGGTTTACCCGCGAAAGggcc                                                                                                                                                <  2:477713/150‑1 (MQ=255)     tgctgGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACATCCGATCGGGGGTGGACACATGTTGGTGATTAGGCGCAGGCCGCGTGTAGGAGCGGGTTTACCCGCGAAAGggccggcc                                                                                                                                            >  2:510359/1‑150 (MQ=255)     tgctgGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACATCCGATCGGGGGTGGACACATGTTGGTGATTAGGCGCAGGCCGCGTGTAGGAGCGGGTTTACCCGCGAAAGggccggcc                                                                                                                                            >  2:236642/1‑150 (MQ=255)       ctgGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACATCCGATCGGGGGTGGACACATGTTGGTGATTAGGCGCAGGCCGCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCct                                                                                                                                          <  1:432541/150‑1 (MQ=255)        tgGCCAATCTCTACCCGTCGCCCACCCTTGCCGCCGCTACCGAACTCGCCGGTAAACCCGCTCCTACATCCGATCGGCGGCGCACACATGTCGGTGACTAGGCACACGCCGCCCGCAGGAGCGGCTTGACCCGCGAACGGGCCGGccccg                                                                                                                                         >  2:38958/1‑148 (MQ=255)          gCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACATCCGATCGGGGGTGGACACATGTTGGTGATTAGGCGCAGGCCGCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCctgct                                                                                                                                       >  1:606454/1‑150 (MQ=255)                 tctACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACATCCGATCGGGGGTGGACACATGTTGGTGATTAGGCGCAGGCCGCGTGTAGGCGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCacc                                                                                                                                <  1:426877/150‑3 (MQ=255)                 tctACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACATCCGATCGGGGGTGGACACATGTTGGTGATTAGGCGCAGGCCGCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAAc                                                                                                                                <  1:236642/150‑1 (MQ=255)                    ccccGGCGCTCACCGTTGCAGCCACTACCGTGTTCGCGAGTATACGCGCTCCTACCTCCGAGCGGGGGTGGACGCATGTTGGGGACTAGGCGCAGGCCGCGGGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAACTTc                                                                                                                             <  2:397503/149‑1 (MQ=21)                      ccGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACATCCGATCGGGGGTGGACACATGTTGGTGATTAGGCGCAGGCCGCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAACTTCCa                                                                                                                           <  2:606454/150‑1 (MQ=255)                      ccGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACATCCGATCGGGGGTGGACACATGTTGGTGATTAGGCGCAGGCCGCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAACTTCCa                                                                                                                           <  1:154892/150‑1 (MQ=255)                      ccGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACATCCGATCGGGGGTGGACACATGTTGGTGATTAGGCGCAGGCCGCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAACTTCCa                                                                                                                           >  1:422248/1‑150 (MQ=255)                        gTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACATCCGATCCGGGGTGGACACATGTTGGTGATTAGGCGCAGGCCGCGTGTAGGAGCGCGTTTACCCGCGAAAGGGCCGGCCCTGCTGCCCAACTTCCAcc                                                                                                                         >  1:28468/1‑150 (MQ=255)                               aCCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACATCCGATCGGGGGTGGACACATGTTGGTGATTAGGCGCAGGCCGCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAACTTCCACCCGCCGtt                                                                                                                  >  1:438573/1‑150 (MQ=255)                                 cGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACATCCGATCGGGGGTGGACACATGTTGGTGATTAGGCGCAGGCCGCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAACTTCCACCCGCCGTTCa                                                                                                                <  1:517955/150‑1 (MQ=255)                                           gcTACCGTATTCGCGGGTAAACCCGCTCCTACATCCGATCGGGGGTGGACACATGTTGGTGATTAGGCGCAGGCCGCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAACTTCCACCCGCCGTTCACCGTTgccgc                                                                                                      <  1:31828/150‑1 (MQ=255)                                                 gTATCCGCGGGCAAAACCCCTCCTACATCCGTTCGGGGGTGGACAAATGTTGGTGATTCAGCTCTGTTCGCTTGTCGCAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAACTTCCTCCCGCCGTTCACCGTTGCCGCCactac                                                                                                <  1:380766/150‑1 (MQ=18)                                                       GCGGGAAACCCCGCTCCTACAGCCGATCGGGGGTGAACACATGTTGGTGATTCGGCGCAGGCCGCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCNGCTGGCCAACTTCCACCCGCCGTTCACCGTTGCCGCCACTACTCAAAc                                                                                          >  1:454492‑M1/1‑150 (MQ=255)                                                           GTAAACCCGCTCCTACATCCGATCGGGGGTGGACACATGTTGGTGATTAGGCGCAGGCCGCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAACTTCCACCCGCCGTTCACCGTTGCCGCCACTACTCAAACCCtt                                                                                      >  2:408173‑M1/1‑150 (MQ=255)                                                            TAAACCCGCTCCTACATCCGATCGGGGGTGGACACATGTTGGTGATTAGGCGCAGGCCGCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAACTTCCACCCGCCGTTCACCGTTGCCGCCACTACTCAAACCCttt                                                                                     >  1:510359‑M1/1‑150 (MQ=255)                                                                CCCGCTCCTACATCCGATCGGGGGTGGACACATGTTGGTGATTAGGCGCAGGCCGCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAACTTCCACCCGCCGTTCACCGTTGCCGCCACTACTCAAACCCTTTCaaa                                                                                 <  1:522024‑M1/150‑1 (MQ=255)                                                                 ccgctcctacacgcggcctgcgcctaatcaccaacatgtgtccacccccgatcggatgtaggagcgggtttacccgcgaaAGGGCCGGCCCTGCTGGCCAACTTCCACCCGCCGTTCACCGTTGCCGCCACTACTCAAACCCTTTCaaaa                                                                                >  2:568387‑M2/81‑150 (MQ=255)                                                                 CCGCTCCTACATCCGATCGGGGGTGGACACATGTTGGTGATTAGGCGCAGGCCGCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAACTTCCACCCGCCGTTCACCGTTGCCGCCACTAATCAAACCCTTTCaaaa                                                                                <  1:518499‑M1/150‑1 (MQ=255)                                                                  cgctcctacacgcggcctgcgcctaatcaccaacatgtgtccacccccgatcggatgtaggagcgggtttacccgcgaaAGGGCCGGCCCTGCTGGCCAACTTCCACCCGCCGTTCACCGTTGCCGCCACTACTCAAACCCTTTCaaaaa                                                                               >  1:358794‑M2/80‑150 (MQ=255)                                                                            tCCGATCGGGGGTGGACACATGTTGGTGATTAGGCGCAGGCCGCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAACTTCCACCCGCCGTTCACCGTTGCCGCCACTACTCAAACCCTTTCAAAAAGCCCCATGCa                                                                     >  2:54657/1‑150 (MQ=255)                                                                                     gggTGGACACATGTTGGTGATTAGGCGCAGGCCGCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAACTTCCACCCGCCGTTCACCGTTGCCGCCACTACTCAAACCCTTTCAAAAAGCCCCAt                                                                        >  2:27544/1‑138 (MQ=255)                                                                                     gggTGGACACATGTTGGTGATTAGGCGCAGGCCGCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAACTTCCACCCGCCGTTCACCGTTGCCGCCACTACTCAAACCCTTTCAAAAAGCCCCAt                                                                        <  1:27544/138‑1 (MQ=255)                                                                                      gcctaatcaccaacatgtgtccacccccgatcggatgtaggagcgggtttacccgcgaaAGGGCCGGCCCTGCTGGCCAACTTCCACCCGCCGTTCACCGTTGCCGCCACTACTCAAACCCTTTCAAAAAGCCCCATGCACCCGCACGac                                                           <  2:358794‑M2/91‑1 (MQ=255)                                                                                       gTGGACACATGTTGGTGATTAGGCGAAGGCCGCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAACTTCCACCCGCCGTTCACCGTTGCCGCCACTACTCAAACCCTTTCAAAAAGCCCCATGCACCCGCACGacc                                                          >  2:433901/1‑150 (MQ=255)                                                                                                                              gagcgggtttacccgcgaaAGGGCCGGCCCTGCTGGCCAACTTCCACCCGCCGTTCACCGTTGCCGCCACTACTCAAACCCTTTCAAAAAGCCCCATGCACCCGCACGAACAACCCCAGAAATACACGACGCTCGCCGTACAACAGCTcc                   >  2:439779‑M2/20‑150 (MQ=255)                                                                                                                                gcgggtttacccgcgaaAGGGCCGGCCCTGCTGGCCAACTTCCACCCGCCGTTCACCGTTGCCGCCACTACTCAAACCCTTTCAAAAAGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAGCGCCgg                 <  1:433901‑M2/133‑1 (MQ=255)                                                                                                                                gcgggtttacccgcgaaAGGGCCGGCCCTGCTGGCCAACTTCCACCCGCCGTTCACCGTTGCCGCCACTACTCAAACCCTTTCAAAAAGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAGCGCCgg                 <  1:439779‑M2/133‑1 (MQ=255)                                                                                                                                     tttacccgcgaaAGGGCCGGCCCTGCTGGCCAACTTCCACCCGCCGTTCACCGTTGCCGCCACTACTCAAACCCTTTCAAAAAGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAGCGCCGGGTAGt            <  1:609912‑M2/138‑1 (MQ=255)                                                                                                                                       tacccgcgaaAGGGCCGGCCCTGCTGGCCAACTTCCACCCGCCGTTCACCGTTGCCGCCACTACTCAAACCCTTTCAAAAAGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAGCGCCGGGTAGTTa          <  2:422248‑M2/140‑1 (MQ=255)                                                                                                                                            gcgaaAGGGCCGGCCCTGCTGGCCAACTTCCACCCGCCGTTCACCGTTGCCGCCACTACTCAAACCCTTTCAAAAAGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAAccc                                     >  1:389993‑M2/6‑118 (MQ=255)                                                                                                                                            gcgaaAGGGCCGGCCCTGCTGGCCAACTTCCACCCGCCGTTCACCGTTGCCGCCACTACTCAAACCCTTTCAAAAAGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAAccc                                     <  2:389993‑M2/113‑1 (MQ=255)                                                                                                                                               aaAGGGCCGGCCCTGCTGGCCAACTTCCACCCGCCGTTCACCGTTGCCGCCACTACTCAAACCCTTTCAAAAAGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAGCGCCGGGTAGTTACTGTTCaa  <  2:522024‑M2/148‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                    GGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACATCCGATCGGGGGTGGACACATGTTGGTGATTAGGCGCAGGCCGCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAACTTCCACCCGCCGTTCACCGTTGCCGCCACTACTCAAACCCTTTCAAAAAGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAGCGCCGGGTAGTTACTGTTCAA  >  NC_002947/4593831‑4594122

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.