New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5345732 =	30 (1.300)	4 (0.190)	4/232	NT	12.0%	coding (1082/1935 nt)	acsA‑II	acetyl‑CoA synthetase
	?	NC_002947	5345771 =	31 (1.450)					coding (1121/1935 nt)	acsA‑II	acetyl‑CoA synthetase

GAAGGCGTGCCCAACTACCCCGATACCTCGCGCTTCTGGCAGGTGGTGGACAAGCACCAGGTGAACATCTTCTACACCGCCCCGACCGCCCTGCGCGCACTGATGCGTGAGGGCTCCGCGCCACTGCAGAGCACCTCACGCAAAAGCCTGCGTCTGCTGGGCAGCGTCGGCGAGCCGATCAACCCGGAAGCCTGGGAATGGTACTTCGAGGAGGTCGGGCAAAAGCGCTGCCCGATTGTGGATACCTGGTGGCAGACCGAAACCGGCGGCATCATGC  >  NC_002947/5345629‑5345905                                                                                                                                               |                                                                                                                                       gAAGGCGTGCCCAACTACCCCGATACCTCGCGCTTCTGGCAGGTGGTGGACAAGCACCAGGTGAACATCTTCTACACCGCCCCGACCGCCCTGCGCGCACTGATGCGTGAGGGCTCCGCGCCACTGCAGAGCACCTCACGCAAAAGCCTg                                                                                                                                 <  1:143415/150‑1 (MQ=255)                 aCCCCGATACCTCGCGCTTCTGGCAGGTGGTGGACAAGCACCAGGTGAACATCTTCTACACCGCCCCGACCGCCCTGCGCGCACTGATGCGTGAGGGCTCCGCGCCACTGCAGAGCACCTCACGCAAAAGCCTGCGt                                                                                                                              >  2:511913/1‑137 (MQ=255)                 aCCCCGATACCTCGCGCTTCTGGCAGGTGGTGGACAAGCACCAGGTGAACATCTTCTACACCGCCCCGACCGCCCTGCGCGCACTGATGCGTGAGGGCTCCGCGCCACTGCAGAGCACCTCACGCAAAAGCCTGCGt                                                                                                                              <  1:511913/137‑1 (MQ=255)                   cccGATACCTCGCGCTTCTGGCAGGTGGTGGACAAGCACCAGGTGAACATCTTCTACACCGCCCCGACCGCCCTGCGCGCACTGATGCGTGAGGGCTCCGCGCCACTGCAGAGCACCTCACGCAAAAGCCTGCGTCTGCTGGGCAGCGTc                                                                                                               >  2:18408/1‑150 (MQ=255)                    ccGATACCTCGCGCTTCTGGCAGGTGGTGGACAAGCACCAGGTGAACATCTTCTACACCGCCCCGACCGCCCTGCGCGCACTGATGCGTGAGGGCTCCGCGCCACTGCAGAGCACCTCACGCAAAAGCCTGCGTCTGCTGGGCAGCGTCg                                                                                                              >  1:206142/1‑150 (MQ=255)                            tCGCGCTTCTGGCAGGTGGTGGACAAGCACCAGGTGAACATCTTCTACACCGCCCCGACCGCCCTGCGCGCACTGATGCGTGAGGGCTCCGCGCCACTGCAGAGCACCTCACGCAAAAGCCTGCGTCTGCTGGGCAGCGTCGGCGAGCCg                                                                                                      >  1:318455/1‑150 (MQ=255)                                    cTGGCAGGTGGTGGACAAGCACCAGGTAAACACCTTCTACCCCGCCCGGACCGCCCTGCGCGCACTGATGCGTGAGGGCTCCGCGCCACTGCAGAGCACCTCACGCAAAAGCCTGCGTCTGCTGGGCAGCGTCGGCGAGCCGATCAAccc                                                                                              <  2:194769/150‑1 (MQ=255)                                                ggACAAGCACCAGGTGAACATCTTCTACACCGCCCCGACCGCCCTGCGCGCACTGATGCGTGAGGGCTCCGCGCCACTGCAGAGCACCTCACGCAAAAGCCTGCGTCTGCTGGGCAGCGTCGGCGAGc                                                                                                        >  2:399420/1‑128 (MQ=255)                                                ggACAAGCACCAGGTGAACATCTTCTACACCGCCCCGACCGCCCTGCGCGCACTGATGCGTGAGGGCTCCGCGCCACTGCAGAGCACCTCACGCAAAAGCCTGCGTCTGCTGGGCAGCGTCGGCGAGc                                                                                                        <  1:399420/128‑1 (MQ=255)                                                    aaGCACCAGGTGAACATCTTCTACACCGCCCCGACCGCCCTGCGCGCACTGATGCGTGAGGGCTCCGCGCCACTGCAGAGCACCTCACGCAAAAGCCTGCGTCTGCTGGGCAGCGTCGGCGAGCCGATCAACCCGGAAGCCTGGGAATgg                                                                              <  1:18408/150‑1 (MQ=255)                                                       cACCAGGTGAACATCTTCTACACCGCCCCGACCGCCCTGCGCGCACTGATGCGTGAGGGCTCCGCGCCACTGCAGAGCACCTCACGCaaaa                                                                                                                                      <  2:335272/91‑1 (MQ=255)                                                       cACCAGGTGAACATCTTCTACACCGCCCCGACCGCCCTGCGCGCACTGATGCGTGAGGGCTCCGCGCCACTGCAGAGCACCTCACGCaaaa                                                                                                                                      >  1:335272/1‑91 (MQ=255)                                                          cAGGTGAACATCTTCTACACCGCCCCGACCGCCCTGCGCGCACTGATGCGTGAGGGCTCCGCGCCACTGCAGAGCACCTCACGCAAAAGCCTGCGTCTGCTGGGCAGCGTCGGCGAGCCGATCAACCCGGAAGCCTGGGAATGGTACTTc                                                                        >  2:336043/1‑150 (MQ=255)                                                             gTGAACATCTTCTACACCGCCCCGACCGCCCTGCGCGCACTGATGCGTGAGGGCTCCGCGCCACTGCAGAGCACCTCACGCAAAAGCCTGCGTCTGCTGGGCAGCGTCGGCGAGCCGATCAACCCGGAAGCCTGGGAATGGTACTTCgag                                                                     <  2:318455/150‑1 (MQ=255)                                                             gTGAACAGCTTCTACACCCCCCCGACCGCAGTGCGCACACTGATGCGTGAGGGCTCTGCGCTACTGCAGACCACCTCACGCAAAAGCCTGCGTCTGCTGGGCAGCGTCGGCGGGCCGATCAACCCGGAAGCCTGGGAATGGTACTTCgag                                                                     <  2:206142/150‑1 (MQ=255)                                                                aaCATCTTCTACACCGCCCCGACCGCCCTGCGCGCACTGATGCGTGAGGGCTCCGCGCAACTGCAGAGCACCTCACGCAAAAGCCTGCGTCTGCTGGGCAGCGTCGGCGAGCCGATCAACCCGGAAGCCTGGGAATGGTACTTCgaggag                                                                  <  1:151348/150‑1 (MQ=255)                                                                    tcttctACACCGCCCCGACCGCCCTGCGCGCACTGATGCGTGAGGGCTCCGCGCCACTGCAGAGCACCTCACGCAAAAGCCTGCGTCTGCTGGGCAGCGTCGGCGAGCGGATCAACCCGGAAGCCTGGGAATGGTACTTCGAGGAGGTCg                                                              >  2:420843/1‑150 (MQ=255)                                                                       tctACACCGCCCCGACCGCCCTGCGCGCACTGATGCGTGAGGGCTCCGCGCCACTGCAGAGCACCTCACGCAAAAGCCTGCGTCTGCTGGGCAGCGTCGGCGAGCCGATCAACCCGGAAGCCTGGGAATGGTACTTCGAGGAGGTCGGGc                                                           >  1:103184/1‑150 (MQ=255)                                                                            acCGCCCCGACCGCCCTGCGCGCACTGATGCGTGAGGGCTCCGCGCCACTGCAGAGCACCTCACGCAAAAGCCTGCGTCTGCTGGGCAGCGTCGGCGAGCCGATCAACCCGGAAGCCTg                                                                                     >  2:170238/1‑119 (MQ=255)                                                                            acCGCCCCGACCGCCCTGCGCGCACTGATGCGTGAGGGCTCCGCGCCACTGCAGAGCACCTCACGCAAAAGCCTGCGTCTGCTGGGCAGCGTCGGCGAGCCGATCAACCCGGAAGCCTg                                                                                     <  1:170238/119‑1 (MQ=255)                                                                            acCGCCCCGACCGCCCTGCGCGCACTGATGCGTGAGGGCTCCGCGCCACTGCAGAGCACCTCACGCAAAAGCCTGCGTCTGCTGGGCAGCGTCGGCGAGCCGATCAACCCGGAAGCCTGGGAATGGTACTTCGAGGAGGTCTGGCAAAAg                                                      >  1:116825/1‑150 (MQ=255)                                                                                ccccGACCGCCCTGCGCGCACTGATGCGTGAGGGCTCCGCGCCACTGCAGAGCACCTCACGCAAAAGCCTGCGTCTGCTGGGCAGCGTCGGCGAGCCGATCAACCCGGAAGCCt                                                                                      >  2:167830/1‑114 (MQ=255)                                                                                ccccGACCGCCCTGCGCGCACTGATGCGTGAGGGCTCCGCGCCACTGCAGAGCACCTCACGCAAAAGCCTGCGTCTGCTGGGCAGCGTCGGCGAGCCGATCAACCCGGAAGCCt                                                                                      <  1:167830/114‑1 (MQ=255)                                                                                           cTGCGCGCACTGATGCGTGAGGGCTCCGCGCCACTGCAGAGCACCTCACGCAAAAGCCTGCGTCTGCTGGGCAGCGTCGGCGAGCCGATCAACCCGGAAGCCTGGGAATGGTACTTCGAGGAGGTCGGGCAAAAGCGCTGCCCGATtgtg                                       >  2:217611/1‑150 (MQ=255)                                                                                                     tGATGCGTGAGGGCTCCGCGCCACTGCAGAGCACCTCACGCAAAAGCCTGCGTCTGCTGGGCAGCGTCGGCGAGCCGATCAACCCGGAAGCCTGGGAATGGTACTTCGAGGAGGTCGGGCAAAAGCGCTGCCCGATTGTGGATACCtggt                             <  1:420843/150‑1 (MQ=255)                                                                                                           gtgaggtgctctgcagtggcgcggagccctcacgcaAAAGCCTGCGTCTGCTGGGCAGCGTCGGCGAGCCGa                                                                                                     <  1:339935‑M2/36‑1 (MQ=255)                                                                                                           gtgaggtgctctgcagtggcgcggagccctcacgcaAAAGCCTGCGTCTGCTGGGCAGCGTCGGCGAGCCGa                                                                                                     >  2:339935‑M2/37‑72 (MQ=255)                                                                                                            tgaggtgctctgcagtggcgcggagccctcacgcaAAAGCCTGCGTCTGCTGGGCAGCGTCGGCGAGCCGATCAACCCGGAAGCCTGGGaa                                                                                 >  1:424552‑M2/36‑91 (MQ=255)                                                                                                            tgaggtgctctgcagtggcgcggagccctcacgcaAAAGCCTGCGTCTGCTGGGCAGCGTCGGCGAGCCGATCAACCCGGAAGCCTGGGaa                                                                                 <  2:424552‑M2/56‑1 (MQ=255)                                                                                                                GGCTCCGCGCCACTGCAGAGCACCTCACGCAAAAGCCTGCGTCTGCTGGGCAGCGTCGGCGAGCCGa                                                                                                     >  2:80896‑M1/1‑67 (MQ=255)                                                                                                                GGCTCCGCGCCACTGCAGAGCACCTCACGCAAAAGCCTGCGTCTGCTGGGCAGCGTCGGCGAGCCGa                                                                                                     <  1:80896‑M1/67‑1 (MQ=255)                                                                                                                   tCCGCGCCACTGCAGAGCACCTCACGCAAAAGCCTGCGTCTGCTGGGCAGCGTCGGCGAGCCGATCAACCCGGAAGCCTGGGAATGGTACTTCGAGGAGGTCGGTCAAAAGCGCTGCCCGATTGTGGATACCTGGTGGCAGACCGACAcc               >  2:280978/1‑150 (MQ=255)                                                                                                                   tCCGCGCCACTGCAGAGCACCTCACGCAAAAGCCTGCGTCTGCTGGGCAGCGTCGGCGAGCCGATCAACCCGGAAGCCTGGGAATGGTACTTCGAGGAGGTCGGGCAAAAGCGCTGCCCGATTGTGGATACCTGGTGGCAGACCGAAAcc               >  1:255615/1‑150 (MQ=255)                                                                                                                   tCCGCGCCACTGCAGAGCACCTCACGCAAAAGCCTGCGTCTGCTGGGCAGCGTCGGCGAGCCGATCAACCCGGAAGCCTGGGAATGGTACTTCGAGGAGGGCGGGCAAAAGCGCTGCCCGATTGTGGATACCTGGTGGCAGACCGAAAcc               >  2:319008/1‑150 (MQ=255)                                                                                                                      gcgcCACTGCAGAGCACCTCACGCAAAAGCCTGCGTCTGCTGGGCAGCGTCGGCGAGCCGATCAACCCGGAAGCCTGGGAATGGTACTTCGAGGAGGTCGGGCAAAAGCGCTGCCCGATTGTGGATACCTGGTGGCAGACCGAAACcggc            >  2:205790/1‑150 (MQ=255)                                                                                                                      gcgcCACTGCAGAGCACCTCACGCAAAAGCCTGCGTCTGCTGGGCAGCGTCGGCGAGCCGATCAACCCGGAAGCCTGGGAATGGTACTTCGAGGAGGTCGGGCAAAAGCGCTGCCCGATTGTGGATACCTGGTGGCAGACCGAAACcggc            <  1:336043/150‑1 (MQ=255)                                                                                                                            cTGCAGAGCACCTCACGCAAAAGCCTGCGTCTGCTGGGCAGCGTCGGCGAGCCGATCAACCCGGAAGCCTGGGAATGGTACTTCGAGGAGGTCGGGCAAAAGCGCTGCCCGATTGTGGATACCTGGTGGCAGACCGAAACCGGCGGcatc      <  2:103184/150‑1 (MQ=255)                                                                                                                              gCAGAGCACCTCACGCAAAAGCCTGCGTCTGCTGGGCAGCGTCGGCGAGCCGATCAACCCGGAAGCCTGGGAATGGTACTTCGAGGAGGTCGGGCAAAAGCGCTGCCCGATTGTGGATACCTGGTGGCAGACCGAAACCGGCGGcatcat    <  1:319008/150‑1 (MQ=255)                                                                                                                                agagCACCTCACGCAAAAGCCTGCGTCTGCTGGGCAGCGTCGGCGAGCCGATCAACCCGGAAGCCTGGGAATGGTACTTCGAGGAGGTCGGGCAAAAGCGCTGCCCGATTGTGGATACCTGGTGGCAGACCGAAACCGGCGGCATCATGc  >  1:387177/1‑150 (MQ=255)                                                                                                                                               |                                                                                                                                       GAAGGCGTGCCCAACTACCCCGATACCTCGCGCTTCTGGCAGGTGGTGGACAAGCACCAGGTGAACATCTTCTACACCGCCCCGACCGCCCTGCGCGCACTGATGCGTGAGGGCTCCGCGCCACTGCAGAGCACCTCACGCAAAAGCCTGCGTCTGCTGGGCAGCGTCGGCGAGCCGATCAACCCGGAAGCCTGGGAATGGTACTTCGAGGAGGTCGGGCAAAAGCGCTGCCCGATTGTGGATACCTGGTGGCAGACCGAAACCGGCGGCATCATGC  >  NC_002947/5345629‑5345905

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.