| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1025270 = | 14 (0.610) | 3 (0.170) | 3/196 | NT | 20.0% | intergenic (‑121/+108) | opdP/dppA‑II | glycine‑glutamate dipeptide porin/dipeptide ABC transporter substrate‑binding protein |
| ? | NC_002947 | 1025363 = | 13 (0.720) | intergenic (‑214/+15) | opdP/dppA‑II | glycine‑glutamate dipeptide porin/dipeptide ABC transporter substrate‑binding protein | |||||
CGCGGGATCGCCGGGCAGAATCGGGGCGTTGTGTTGGCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTAAGCGGCTGGCTCACGATGGAATGCGCCACCGGCGTAATCGG > NC_002947/1025226‑1025491 | cgcgGGCTCGCCGCGGAGAATCGGCGCGTTGTGTGGCCCGTGCTGGCCTCTTCGCACGCAACGCCGCGCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCCAGATCCTGGGGGACCGGCCTCGCCCGCGAAGAGGCCGGTACTGGCTAAc < 2:379612/150‑1 (MQ=255) gcgGGATCGCCGGGCAGAATCGGGGCGTTGTGTTGGCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGCTAGGGAGCAGCGTCTGAACCTGGCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACg > 1:294149/1‑150 (MQ=38) ccGGGCAGGATCGGGGCGTTGTGTTGGCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAAACTGTCGAGATCCTGTGGGCGAGGGCTTACCGGCGAAGAGGCCGGTACTGGCTAACGCTTAATCaa > 1:560458/1‑150 (MQ=39) ggCAGAATCGGGGCGTTGTGTTGGCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAacac < 1:193744/150‑1 (MQ=255) ggggCGTTGTGTTGGCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGAACTGGCTAACGCTTAATCAACACTCACACCgg > 1:380276/1‑150 (MQ=255) gCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATTgcgc > 1:202621/1‑150 (MQ=255) GCCTCTTCGCGGTCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATTGCGCCCAAACggg > 2:232490‑M1/1‑150 (MQ=255) GCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCCAACGCTTAATCAACACTCACACCGGAAAAATCATTGCGCCCAAACggg < 2:413919‑M1/150‑1 (MQ=255) tcttcgcgggcaagcccgctcccacaggatctcgacaggttcggacacagcgccctacctgagggagcgggcttgcccgcgaagaggccGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATTgc < 1:521152‑M2/47‑1 (MQ=255) tcttcgcgggcaagcccgctcccacaggatctcgacaggttcggacacagcgccctacctgagggagcgggcttgcccgcgaagaggccGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATTgc > 2:521152‑M2/90‑136 (MQ=255) gcccgctcccacaggatctcgacaggttcggacactgcgccctacctgagggagcgggcttgcccgcgaagaggccGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTggg > 1:342390‑M2/77‑150 (MQ=255) CCCGCTCACTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGAGGGAGCCGGCTCGCCCGCGAAGAGGCCACTACTGGCTAACGCTTAATCAACACGCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGa < 2:25850‑M1/150‑1 (MQ=255) CCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTg < 2:337131‑M1/150‑1 (MQ=255) atCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGa < 2:250880/149‑1 (MQ=255) tCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGAc < 2:406381/150‑1 (MQ=255) gTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTa > 1:348268/1‑150 (MQ=255) aGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTAAg < 1:126718/150‑1 (MQ=255) aGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTAAGCggctgg < 1:413919/150‑1 (MQ=255) aaCCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTAAGCGGCTGGCTCACGAt > 1:93648/1‑150 (MQ=255) gTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTAAGCGGCTGGCTCACGATGGAAt < 2:348268/150‑1 (MQ=255) cTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTAAGCGGCTGGCTCACGATGGAATGCGCCACCg > 2:210728/1‑150 (MQ=255) gggcaagcccgcgaagaggccGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTAAGCGGCTGGCTCACGATGGAATGCGCCACCGGCGTAATCgg > 2:588789‑M2/22‑150 (MQ=255) gcgaagaggccGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATTgcg > 2:35759‑M2/12‑59 (MQ=255) gcgaagaggccGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATTgcg < 1:35759‑M2/48‑1 (MQ=255) cGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTAAGCggctgg < 2:326316‑M2/97‑1 (MQ=255) cGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTAAGCggctgg > 1:326316‑M2/2‑98 (MQ=255) | CGCGGGATCGCCGGGCAGAATCGGGGCGTTGTGTTGGCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTAAGCGGCTGGCTCACGATGGAATGCGCCACCGGCGTAATCGG > NC_002947/1025226‑1025491 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |