New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1263652 =	25 (1.080)	4 (0.180)	4/242	NT	15.3%	coding (761/1659 nt)	PP_1105	ATP‑dependent DNA ligase
	?	NC_002947	1263688 =	20 (0.890)					coding (725/1659 nt)	PP_1105	ATP‑dependent DNA ligase

AGACCAGGATCTCGCCATCGAGCACCACGCCATCGGGCAACGTCTGTGCCAGGCCATGCAGTTCGGGGAAGCGCTCGGTAACCAGTTCTTCGCCGCGTGACCACACCCACAGCTGGCCATCGCGCTTCACCACTTGCGCCCGAATGCCATCCCACTTCCATTCGATTTGCCAATCGCTTGGTGGTCCGAGCAGGGTATCGAACTGATCGCTGGACACTTGCAGCGGATGGGCCAGGAAGAATGGGTAGGGCTGACCGCCACGCTGGTTGTGTTCATCGGCGGACTCTGGGG  >  NC_002947/1263539‑1263829                                                                                                                                                      |                                                                                                                                              cgtggcggtcagccctacccattcttcctggcccatccgctgcaagtgtccagcgatcagttcgataccctgctcggaccaccaagcgattggcaaatcgaatggaagtgggaTGGCCATCGCGCTTCACCACTTGCGCCCGAATGCCAt                                                                                                                                               >  2:519550‑M1/114‑150 (MQ=255) aGACCAGGATCTCGCCATCGAGCACCACGCCATCGGGCAACGTCTGTGCCAGGCCATGCAGTTCGGGGAAGCGCTCGGTAACCAGTTCTTCGCCGCGTGACCACACCCACAGCTGGCCATCGCGCTTCACCACTTGCGCCCGAATGCCAt                                                                                                                                               >  1:338299/1‑150 (MQ=255)   aCCAGGATCTCGCCATCGAGCACCACGCCATCGGGCAACGTCTGTGCCAGGCCATGCAGTTCGGGGAAGCGCTCGGTAACCAGTTCTTCGCCGCGTGACCACACCCACAGCTGGCCATCGCGCTTCACCACTTGCGCCCGAATGCCATcc                                                                                                                                             <  2:297852/150‑1 (MQ=255)     cAGGATCTCGCCATCGAGCACCACGCCATCGGGCAACGTCTGTGCCAGGCCATGCAGTTCGGGGAAGCGCTCGGTAACCAGTTCTTCGCCGCGTGACAACACCCACAGCTGGCCATCGCGCTTCACCACTTGCGCCCGAATGCCATCCCa                                                                                                                                           >  1:113498/1‑150 (MQ=255)               ctacccattcttcctggcccatccgctgcaagtgtccagcgatcagttcgataccctgctcggaccaccaagcgattggcaaatcgaatggaagtgggaTGGCCATCGCGCTTCACCACTTGCGCCCGAATGCCATCCCAc                                                                                                                                          <  2:440985‑M1/42‑1 (MQ=255)               ctacccattcttcctggcccatccgctgcaagtgtccagcgatcagttcgataccctgctcggaccaccaagcgattggcaaatcgaatggaagtgggaTGGCCATCGCGCTTCACCACTTGCGCCCGAATGCCATCCCAc                                                                                                                                          >  1:440985‑M1/100‑141 (MQ=255)                 aTCGAGCACCACGCCATCGGGCAACGTCTGTGCCAGGCCATGCAGTTCGGGGAAGCGCTCGGTAACCAGTTCTTCGCCGCGTGACCACACCCACAGCTGGCCATCGCGCTTCACCACTTGCGCCCGAATGCCATCCCACTTCCATTCGAt                                                                                                                               <  2:318216/150‑1 (MQ=255)                   cGAGCACCACGCCATCGGGCAACGTCTGTGCCAGGCCATGCAGTTCGGGGAAGCGCTCGGTAACCAGTTCTTCGCCGCGTGACCACACCCACAGCTGGCCATCGCGCTTCACCACTTGCGCCCGAATGCCATCCCACTTCCATTCGAttt                                                                                                                             >  1:152251/1‑150 (MQ=255)                                     gCAACGTCTGTGCCAGGCCATGCAGTTCGGGGAAGCGCTCGGTAACCAGTTCTTCGCCGCGTGACCACACCCACAGCTGGCCATCGCGCTTCACCACTTGCGCCCGAATGCCATCCCACTTCCATTCGATTTGCCAATCGCTTGGTGGTc                                                                                                           >  2:505837/1‑150 (MQ=255)                                                       cATGCAGTTCGGGGAAGCGCTCGGTAACCAGTTCTTCGCCGCGTGACCACACCCACAGCTGGCCATCGCGCTTCACCACTTGCGCCCGAATGCCATCCCACTTCCATTCGATTTGCCAATCGCTTGGTGGTCCGAGCAGGGTATCGAACt                                                                                         <  2:1828/150‑1 (MQ=255)                                                       cATGCAGTTCGGGGAAGCGCTCGGTAACCAGTTCTTCGCCGCGTGACCACACCCACAGCTGGCCATCGCGCTTCACCACTTGCGCCCGAATGCCATCCCACTTCCATTCGATTTGCCAATCGCTTGGTGGTCCGAGCAGGGTATCGAACt                                                                                         >  2:310941/1‑150 (MQ=255)                                                                        cgcTCGGTAACTTGTTCTTCGCCGCGTGACCACACCCACAGCTGGCCATCGCGCTTCACCCATTATGCCCGGGTGCGATCCGCTTTCCATTCGATTTGCCACTCGCTTGGTGGTCCGAGCAGTGTATCGAACTGATCGCTGGACACTTGc                                                                        <  1:505837/150‑1 (MQ=255)                                                                              gTAACCAGTTCTTCGCCGCGTGACCACACCCACAGCTGGCCATCGCGCTTCACCACTTGCGCCCGAATGCCATCCCACTTCCATTCGATTTGCCAATCGCTTGGTGGTCCGAGCAGGGTATCGAACTGATCGCTGGACACTTGCAGCGGa                                                                  >  1:409956/1‑150 (MQ=255)                                                                                 aCCAGTTCTTCGCCGCGTGACCACACCCACAGCTGGCCATCGCGCTTCACCACTTGCGCCCGAATGCCATCCCACTTCCATTCGATTTGCCAATCGCTTGGTGGTCCGAGCAGGGTATCGAACTGATCGCTGGACACTTGCAGCGGATgg                                                               <  1:310941/150‑1 (MQ=255)                                                                                   cAGTTCTTCGCCGCGTGACCACACCCACAGCTGGCCATCGCGCTTCACCACTTGCGCCCGAATGCCATCCCACTTCCATTCGATTTGCCAATCGCTTGGTGGTCCGAGCAGGGTATCGAACTGATCGCTGGACACTTGCAGCGGATGGGc                                                             <  2:409956/150‑1 (MQ=255)                                                                                            gccgcGTGACCACACCCACAGCTGGCCATCGCGCTTCACCACTTGCGCCCGAATGCCATCCCACTTCCATTCGATTTGCCAATCGCTTGGTGGTCCGAGCAGGGTATCGAACTGATCGCTg                                                                                 <  2:365623/121‑1 (MQ=255)                                                                                            gccgcGTGACCACACCCACAGCTGGCCATCGCGCTTCACCACTTGCGCCCGAATGCCATCCCACTTCCATTCGATTTGCCAATCGCTTGGTGGTCCGAGCAGGGTATCGAACTGATCGCTg                                                                                 >  1:365623/1‑121 (MQ=255)                                                                                              cgcgTGACCACACCCACAGCTGGCCATCGCGCTTCACCACTTGCGCCCGAATGCCATCCCACTTCCATTCGATTTGCCAATCGCTTGGTGGTCCGAGCAGGGTATCGAACTGATCGCTGGACACTTGCAGCGGATGGGCCAGGAAGAATg                                                  <  1:411002/150‑1 (MQ=255)                                                                                                         acCCACAGCTGGCCATCGCGCTTCACCACTTGCGCCCGAATGCCATCCCACTTCCATTCGATTTGCCAATCGCTTGGTGGTCCGAGCAGGGTATCGAACTGATCGCTGGACACTTGCAGCGGATGGGCCAGGAAGAATGGGTAGGGCTGa                                       >  2:28322/1‑150 (MQ=255)                                                                                                            gtgggatggcattcgggcgcaagtggtgaagcgcgatggccaTCCCACTTCCATTCGATTTGCCAATCGCTTGGTGGTCCGAGCAGGGTATCGAACTGATCGCTGGACACTTGCAGCGGATGGGCCAGGAAGAATGGGTAg                                             >  1:440985‑M2/43‑141 (MQ=255)                                                                                                            gtgggatggcattcgggcgcaagtggtgaagcgcgatggccaTCCCACTTCCATTCGATTTGCCAATCGCTTGGTGGTCCGAGCAGGGTATCGAACTGATCGCTGGACACTTGCAGCGGATGGGCCAGGAAGAATGGGTAg                                             <  2:440985‑M2/99‑1 (MQ=255)                                                                                                                 atggcattcgggcgcaagtggtgaagcgcgatggccaTCCCACTTCCATTCGATTTGCCAATCGCTTGGTGGTCCGAGCAGGGTATCGAACTGATCGCTGGACACTTGCAGCGGATGGGCCAGGAAGAATGGGTAGGGCTGACCGCCACg                               >  2:519550‑M2/38‑150 (MQ=255)                                                                                                                       aTCGCGCTTCACCACTTGCGCCCGAATGCCATCCCACTTCCATTCGATTTGCCAATCGCTTGGTGGTCCGAGCAGGGTATCGAACTGATCGCTGGACACTTGCAGCGGATgg                                                               <  2:247877/112‑1 (MQ=255)                                                                                                                       aTCGCGCTTCACCACTTGCGCCCGAATGCCATCCCACTTCCATTCGATTTGCCAATCGCTTGGTGGTCCGAGCAGGGTATCGAACTGATCGCTGGACACTTGCAGCGGATgg                                                               >  1:247877/1‑112 (MQ=255)                                                                                                                       aTCGCGCTTCACCACTTGCGCCCGAATGCCATCCCACTTCCATTCGATTTGCCAATCGCTTGGTGGTCCGAGCAGGGTATCGAACTGATCGCTGGACACTTGCAGCGGATGGGCCAGGAAGAATGGGTAGGGCTGACCGCCACGCTGGtt                         <  2:113498/150‑1 (MQ=255)                                                                                                                                  ccacTTGCGCCCGAATGCCATCCCACTTCCATTCGATTTGCCAATCGCTTGGTGGTCCGAGCAGGGTATCGAACTGATCGCTGGACACTTGCAGCGGATGGGCCAGGAAGAATGGGTAGGGCTGACCGCCACGCTGGTTGTGTTCATcgg              >  1:200031/1‑150 (MQ=255)                                                                                                                                   tggtgaagcgcgatggccaTCCCACTTCCATTCGATTTGCCAATCGCTTGGTGGTCCGAGCAGGGTATCGAACTGATCGCTGGACACTTGCAGCGGATGGGCCAGGAAGAATGGGTAGGGCTGACCGCCACGCTGGTTGTGTTCATcggc             <  1:519550‑M2/131‑1 (MQ=255)                                                                                                                                   cacTTGCGCCCGAATGACATCCCACTTCCATTCGATTTGCCAATCGCTTGGTGGTCCGAGCAGGGTATCGAACTGATCGCTGGACACTTGCAGCGGATGGGCCAGGAAGAATGGGTAGGGCTGAc                                      <  2:267369/125‑1 (MQ=255)                                                                                                                                   cacTTGCGCCCGAATGACATCCCACTTCCATTCGATTTGCCAATCGCTTGGTGGTCCGAGCAGGGTATCGAACTGATCGCTGGACACTTGCAGCGGATGGGCCAGGAAGAATGGGTAGGGCTGAc                                      >  1:267369/1‑125 (MQ=255)                                                                                                                                          gcCCGAATGCCATCCCACTTCCATTCGATTTGCCAATCGCTTGGTGGTCCGAGCAGGGTATCGAACTGATCGCTGGACACTTGCAGCGGATGGGCCAGGAAGAATGGGTATGGCTGACCGCCACGCTGGATGTGTTCATAGGCGGActct      >  2:227632/1‑150 (MQ=255)                                                                                                                                             cGAATGCCATCCCACTTCCATTCGATTTGCCAATCGCTTGGTGGTCCGAGCAGGGTATCGAACTGATCGCTGGACACTTGCAGCGGATGGGCCAGGAAGAATTTGTAGGGCTGACCGCCACGCTGGTTGTGTTCATCGGCGGACTCTggg   <  2:152251/150‑1 (MQ=255)                                                                                                                                             cGAATGCCATCCCACTTCCATTCGATTTGCCAATCGCTTGGTGGTCCGAGCAGGGTATCGAACTGATCGCTGGACACTTGCAGCGGATGGGCCAGGAAGAATGGGTAGGGCTGACCGCCACGCTGGTTGTGTTCATCGGCGGACTCTggg   <  2:338299/150‑1 (MQ=255)                                                                                                                                              gAATGCCATCCCACTTCCATTCGATTTGCCAATCGCTTGGTGGTCCGAGCAGGGTATCGAACTGATCGCTGGACACTTGCAGCGGATGGGCCAGGAAGAATGGGTAGGGCTGACCGCCACGCTGGTTGTGTTCATCGGCGGACTCTgggg  <  2:200031/150‑1 (MQ=255)                                                                                                                                                      tCCCACTTCCATTCGATTTGCCAATCGCTTGGTGGTCCGAGCAGGGTATCGAACTGATCGCTGGACACTTGCAGCGGATGGGCCAGGAAGAATGGGTAGGGCt                                         <  2:479407/103‑1 (MQ=255)                                                                                                                                                      tCCCACTTCCATTCGATTTGCCAATCGCTTGGTGGTCCGAGCAGGGTATCGAACTGATCGCTGGACACTTGCAGCGGATGGGCCAGGAAGAATGGGTAGGGCt                                         >  1:479407/1‑103 (MQ=255)                                                                                                                                                      |                                                                                                                                              AGACCAGGATCTCGCCATCGAGCACCACGCCATCGGGCAACGTCTGTGCCAGGCCATGCAGTTCGGGGAAGCGCTCGGTAACCAGTTCTTCGCCGCGTGACCACACCCACAGCTGGCCATCGCGCTTCACCACTTGCGCCCGAATGCCATCCCACTTCCATTCGATTTGCCAATCGCTTGGTGGTCCGAGCAGGGTATCGAACTGATCGCTGGACACTTGCAGCGGATGGGCCAGGAAGAATGGGTAGGGCTGACCGCCACGCTGGTTGTGTTCATCGGCGGACTCTGGGG  >  NC_002947/1263539‑1263829

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.