| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1581381 = | 23 (1.000) | 3 (0.140) | 4/240 | NT | 12.5% | coding (58/3153 nt) | ttgB | efflux pump membrane protein TtgB |
| ? | NC_002947 | 1581399 = | 20 (0.900) | coding (40/3153 nt) | ttgB | efflux pump membrane protein TtgB | |||||
CTGCACCACGGTGTCCTGCACGGTTTGCGCCGAGGCGCCCGGGTAGGTCACGGCGATGGCGATGGCTGGCGGCGCGATACTGGGGTACTGGTTGATCGGCAGCTTCAGGATGGACAAGGCCCCGACCAGCATGATCACCAAGGCGATCACCCAGGCGAAGATCGGGCGATCGATAAAGAACTTCGACATGGTTTACTCCGCTTTGGCGTCTGCTTTCGCCGCGTTGGCCTGATCAGGACCGGCCGGCTTCTTGACGTTGGTGGCATCGCTGACCTTCACCTCGACGCCTGGG > NC_002947/1581250‑1581541 | ggtgaaggtcagcgatgccaccaacgtcaagaagccggccggtcctgatcaggccaacgcggcgaaagcagacgccaaagcggagtaaaccatgtcgaagttctttatcgatcgcccgatcttcgcctgggTGATCACCAAGGCGATCAc > 2:543964‑M1/132‑150 (MQ=255) caccacGGTGTCCTGCACGGTTTGCGCCGAGGCGCCCGGGTAGGTCACGGCGATGGCGATGGCTGGCGGCGCGATACTGGGGTACTGGTTGATCGGCAGCTTCAGGATGGACAAGGCCCCGACCAGCATGATCACCAAGGCGATCACCCa < 2:150672/150‑1 (MQ=255) aaggtcagcgatgccaccaacgtcaagaagccggccggtcctgatcaggccaacgcggcgaaagcagacgccaaagcggagtaaaccatgtcgaagttctttatcgatcgcccgatcttcgcctgggtgatcaccaaggcgatcaCCCAg < 1:59247‑M2/5‑1 (MQ=255) ttGCGCCGAGGCGCCCGGGTAGGTCACGGCGATGGCGATGGCTGGCGGCGCGATACTGGGGTACTGGTTGATCGGCAGCTTCAGGATGGACAAGGCCCCGACCAGCATGATCACCAAGGCGATCACCCAGGCGAAGATCGGGcgatcgat > 1:593441/1‑150 (MQ=255) tGCGCCGAGGCACCCGGGTAGGTCACGGCGATGGCGATGGCTGGCGGCGCGATACTGGGGTACTGGTTGATCGGCAGCTTCAGGATGGACAAGGCCCCGACCAGCATGATCACCAAGGCGATCACCCAGGCGAAGATCGGGCGATCGATa < 1:443004/150‑1 (MQ=255) cccGGGTAGGTCACGGCGATGGCGATGGCTGGCGGCGCGATACTGGGGTACTGGTTGATCGGCAGCTTCAGGATGGACAAGGCCCCGACCAGCATGATCACCAAGGCGATCACCCAGGCGAAGATCGGGCGATCGATAAAGAACTTCGAc < 2:201204/150‑1 (MQ=255) cACGGCGATGGCGATGGCTGGCGGCGCGATACTGGGGTACTGGTTGATCGGCAGCTTCAGGATGGACAAGGCCCCGACCAGCATGATCACCAAGGCGATCACCCAGGCGAAGATCGGGCGATCGATAAAGAACTTCGACATGGTTTACTc > 2:462200/1‑150 (MQ=255) gcgatggcgatgGCTGGCGGCGCGATACTGGGGTACTGGTTGATCGGCAGCTTCAGGATGGACAAGGCCCCGACCAGCATGATCACCAAGGCGATCACCCAGGCGAAGATCGGGCGATCGATAAAGAACTTCGACATGGTTTACTCCGCt < 2:544862/150‑1 (MQ=255) gatggcgatggcTGGCGGCGCGATACTGGGGTACTGGTTGATCGGCAGCTTCAGGATGGACAAGGCCCCGACCAGCATGATCACCAAGGCGATCACCCAGGCGAAGATCGGGCGATCGATAAAGAACTTCGACATGGTTTACTCCGCttt < 2:317075/150‑1 (MQ=255) gatggcTGGCGGCGCGATACTGGGGTACTGGTTGATCGGCAGCTTCAGGATGGACAAGGCCCCGACCAGCATGATCACCAAGGCGATCACCCAGGCGAAGATCGGGCGATCGATAAAGAACTTCGACATGGTTTACTCCGCTTTGGCGTc > 2:71326/1‑150 (MQ=255) gcagacgccaaagcggagtaaaccatgtcgaagttctttatcgatcgcccgatcttcgcctgggtgatcaccaaggcgatcaCCCAg > 1:404904‑M2/83‑87 (MQ=255) gcagacgccaaagcggagtaaaccatgtcgaagttctttatcgatcgcccgatcttcgcctgggtgatcaccaaggcgatcaCCCAg < 2:404904‑M2/5‑1 (MQ=255) gcgATACTGGGGTACTGGTTGATCGGCAGCTTCAGGATGGACAAGGCCCCGACCAGCATGATCACCAAGGCGATCACCCAGGCGAAGATCGGGCGATCGATAAAGAACTTCGACATGGTTTACTCCGCTTTGGCGTCTGCTTTCGCcgcg > 1:561970/1‑150 (MQ=255) gggTACTGGTTGATCGGCAGCTTCAGGATGGACAAGGCCCCGACCAGCATGATCACCAAGGCGATCACCCAGGCGAAGATCGGGCGATCGATAAAGAACTTCGACATGGTTTACTCCGCTTTGGc > 1:595068/1‑125 (MQ=255) gggTACTGGTTGATCGGCAGCTTCAGGATGGACAAGGCCCCGACCAGCATGATCACCAAGGCGATCACCCAGGCGAAGATCGGGCGATCGATAAAGAACTTCGACATGGTTTACTCCGCTTTGGc < 2:595068/125‑1 (MQ=255) gggTACTGGTTGATCGGCAGCTTCAGGATGGACAAGGCCCCGACCAGCATGATCACCAAGGCGATCACCCAGGCGAAGATCGGGCGATCGATAAAGAACTTCGACATGGTTTACTCCGCTTTGGCGTATGCTTTCGCCGCGTTGGCCTGa > 2:540429/1‑150 (MQ=255) ggTACTGGTTGATCGGCAGCTTCAGGATGGACAAGGCCCCGACCAGCATGATCACCAAGGCGATCACCCAGGCGAAGATCGGGCGATCGATAAAGAACTTCGACATGGTTTACTCCGCTTTGGCGTCTGCTTTCGCCGCGTTGGCCTGAt < 1:462200/150‑1 (MQ=255) gtaaaccatgtcgaagttctttatcgatcgcccgatcttcgcctgggTGATCACCAAGGCGATCAc < 1:281374‑M1/19‑1 (MQ=255) gtaaaccatgtcgaagttctttatcgatcgcccgatcttcgcctgggTGATCACCAAGGCGATCAc > 2:281374‑M1/48‑66 (MQ=255) tACTGGTTGATCGGCAGCTTCAGGATGGACAAGGCCCCGACCAGCATGATCACCAAGGCGATCACCCAGGCGAAGATCGGGCGATCGATAAAGAACTTCGACATGGTTTACTCCGCTTTGGCGTCTGCTTTCGCCGCGTTGGCCTGATCa < 1:568136/150‑1 (MQ=255) tCGGCAGCTTCAGGATGGACAAGGCCCCGACCAGCATGATCACCAAGGCGATCACCCAGGCGAAGATCGGGCGATCGATAAAGAACTTCGACATGGTTTACTCCGCTTTGGCGTCTGCTTTCGCCGCGTTGGCCTGATCAGGAccggccg > 1:364171/1‑150 (MQ=255) aTGGACAAGGCCCCGACCAGCATGATCACCAAGGCGATCACCCAGGCGAAGATCGGGCGATCGATAAAGAACTTCGACATGGTTTACTCCGCTTTGGCGTCTGCTTTCGCCGCGTTGGCCTGATCAGGACCGGCCGGCTTCTTGACGTtg > 1:541697/1‑150 (MQ=255) ggACAAGGCCCCGACCAGCATGATCACCAAGGCGATCACCCAGGCGAAGATCGGGCGATCGATAAAGAACTTCGACATGGTTTACTCCGCTTTGGCGTCTGCTTTCGCCGCGTTGGCCTGATCAGGACCGGCCGGCTTCTTGACGTtggt < 1:71326/150‑1 (MQ=255) ggCCCCGACCAGCATGATCACCAAGGCGATCACCCAGGCGAAGATCGGGCGATCGATAAAGAACTTCGACATGGTTTACTCCGCTTTGGCGTCTGCTTTCGCCGCGTTGGCCTGATCAGGACCGGCCGGCTTCTTGACGTTGGTGGCATc > 1:186958/1‑150 (MQ=255) ggCCCCGACCAGCATGATCACCAAGGCGATCACCCAGGCGAAGATCGGGCGATCGATAAAGAACTTCGACATGGTTTACTCCGCTTTGGCGTCTGCTTTCGCCGCGTTGGCCTGATCAGGACCGGCCGGCTTCTTGACGTTGGTGGCATc > 1:186956/1‑150 (MQ=255) cccGACCAGCATGATCACCAAGGCGATCACCCAGGCGAAGATCGGGCGATCGATAAAGAACTTCGACATGGTTTACTCCGCTTTGGCGTCTGCTTTCGCCGCGTTGGCCTGATCAGGACCGGCCGGCTTCTTGACGTTGGTGGCATCGCt > 2:90312/1‑150 (MQ=255) ctgggTGATCGCCTTGGTGATCACCCAGGCGAAGATCGGGCGATCGATAAAGAACTTCGACATGGTTTACTCCGCTTTGGCGTCTGc < 2:404904‑M1/82‑1 (MQ=255) ctgggTGATCGCCTTGGTGATCACCCAGGCGAAGATCGGGCGATCGATAAAGAACTTCGACATGGTTTACTCCGCTTTGGCGTCTGc > 1:404904‑M1/6‑87 (MQ=255) ctgggTGATCGCCTTGGTGATCACCCAGGCGAAGATCGGGCGATCGATAAAGAACTTCGACATGGTTTACTCCGCTTTGGCGTCTGCTTTCGCCGCGTTGGCCTGATCAGGACCGGCCGGCTTCTTGACGTTGGTGGCATCGCTGACCtt < 1:59247‑M1/145‑1 (MQ=255) gtgatcgccttggtgatcaCCCAGGCGAAGATCGGGCGATCGATAAAGAACTTCGACATGGTTTAc > 2:281374‑M2/20‑66 (MQ=255) gtgatcgccttggtgatcaCCCAGGCGAAGATCGGGCGATCGATAAAGAACTTCGACATGGTTTAc < 1:281374‑M2/47‑1 (MQ=255) gtgatcgccttggtgatcaCCCAGGCGAAGATCGGGCGATCGATAAAGAACTTCGACATGGTTTACTCCGCTTTGGCGTCTGCTTTCGCCGCGTTGGCCTGATCAGGACCGGCCGGCTTCTTGACGTTGGTGGCATCGCTGACCTTCAcc > 2:543964‑M2/20‑150 (MQ=255) TCACCAAGGCGATCACCCAGGCGAAGATCGGGCGATCGATAAAGAACTTCGACATGGTTTACTCCGCTTTGGCGTCTGCTTTCGCCGCGTTGGCCTGATCAGGACCGGCCGGCTTCTTGACGTTGGTGGCATCGCTGACCTTCACCTcgc < 2:215919‑M1/150‑2 (MQ=255) aCCAAGGCGATCACCCAGGCGAAGATCGGGCGATCGATAAAGAACTTCGACATGGTTTACTCCGCTTTGGCGTCTGCTTTCGCCGCGTTGGCCTGATCAGGACCGGCCGGCTTCTTGACGTTGGTGGCATCGCTGACCTTCACCTCGACg > 1:192911/1‑150 (MQ=255) gCGATCACCCAGGCGAAGATCGGGCGATCGATAAAGAACTTCGACATGGTTTACTCCGCTTTGGCGTCTGCTTTCGCCGCGTTGGCCTGATCAGGACCGGCCGGCTTCTTGACGTTGGTGGCATCGCTGACCTTCACCTCGACGCCTggg < 2:541697/150‑1 (MQ=255) | CTGCACCACGGTGTCCTGCACGGTTTGCGCCGAGGCGCCCGGGTAGGTCACGGCGATGGCGATGGCTGGCGGCGCGATACTGGGGTACTGGTTGATCGGCAGCTTCAGGATGGACAAGGCCCCGACCAGCATGATCACCAAGGCGATCACCCAGGCGAAGATCGGGCGATCGATAAAGAACTTCGACATGGTTTACTCCGCTTTGGCGTCTGCTTTCGCCGCGTTGGCCTGATCAGGACCGGCCGGCTTCTTGACGTTGGTGGCATCGCTGACCTTCACCTCGACGCCTGGG > NC_002947/1581250‑1581541 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |