New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1573491 =	26 (1.120)	4 (0.180)	4/242	NT	13.2%	coding (207/792 nt)	pcaD	3‑oxoadipate enol‑lactonase
	?	NC_002947	1573532 =	28 (1.260)					coding (248/792 nt)	pcaD	3‑oxoadipate enol‑lactonase

CCGTGTTGCACAGGGTCAGGCTGTGCAGGCGCTCACCTGCATGGATACCCAGCCACTGGCCGATCAGGCCGCCCATCGACAGGCCGACGAAGTGAGCCTTTTGAATGTCCAGGCCATCGAGCAGGGCCAGCACGTCGCGGCCCAGCTGTTCGATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1573645‑1573491 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgatgGCCTGGACATTCAAAAGGCTCACTTCGTCGGCCTGTCGATGGGCGGCCTGATCGGCCAGTGGCTGGGTATCCATGCAGGTGAGCGCCTGCACAGCCTGACCCTGTGCAACACGGCCG  >  NC_002947/1573532‑1573648                                                                                                                                                                                                                                                                                  CCGTGTTGCACAGGGTCAGGCTGTGCAGGCGCTCACCTGCATGGATACCCAGCCACTGGCCGATCAGGCCGCCCATCGACAGGCCGACGAAGTGAGCCTTTTGAATGTCCAGGCCATCGAGCAGGGCCAGCACGTCGCGGCCCAGCTGTT                                                                                                                            <  1:470051/150‑1                                                                                                                  CCATCGAGCAGGGCCAGCACGTCGCGGCCCAGCTGTTCGATGGCCTGGACATTCAAAAGGCTCACTTCGTCGGCCTGTCGATGGGCGGCCTGATCGGCCAGTGGCTGGGTATCCATGCAGGTGAGCGCCTGCACAGCCTGA                    >  1:356461/1‑141                                                                                                                  CCATCGAGCAGGGCCAGCACGTCGCGGCCCAGCTGTTCGATGGCCTGGACATTCAAAAGGCTCACTTCGTCGGCCTGTCGATGGGCGGCCTGATCGGCCAGTGGCTGGGTATCCATGCAGGTGAGCGCCTGCACAGCCTGA                    <  2:356461/141‑1                                                                                                                   CATCGAGCAGGGCCAGCACGTCGCGGCCCAGCTGTTCGATGGCCTGGACATTCAAAAGGCTCACTTCGTCGGCCTGTCGATGGGCGGCCTGATCGGCCAGTGGCTGGGTATCCATGCAGGTGAGCGCCTGCACAGCCTGACCCTGTGCAA          >  1:382628/1‑150                                                                                                                        AGCAGGGCCAGCACGTCGCGGCACAGC‑‑‑TCGATGGCCGGGACATTCAAAAGGCTCAATTCGTCGGCCTGTCGATGGGCGGCCTGATCGGCCAGTGGCTGGGTATCCATGCAGGTGAGCGCCTGCACAGCCTGACCCTGTGCAACACGGCCG  >  1:321493/1‑150                                                                                                                                                                                                                                                                                  CCGTGTTGCACAGGGTCAGGCTGTGCAGGCGCTCACCTGCATGGATACCCAGCCACTGGCCGATCAGGCCGCCCATCGACAGGCCGACGAAGTGAGCCTTTTGAATGTCCAGGCCATCGAGCAGGGCCAGCACGTCGCGGCCCAGCTGTTCGATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1573645‑1573491 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgatgGCCTGGACATTCAAAAGGCTCACTTCGTCGGCCTGTCGATGGGCGGCCTGATCGGCCAGTGGCTGGGTATCCATGCAGGTGAGCGCCTGCACAGCCTGACCCTGTGCAACACGGCCG  >  NC_002947/1573532‑1573648

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.