New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1573491 =	26 (1.120)	4 (0.180)	4/242	NT	13.2%	coding (207/792 nt)	pcaD	3‑oxoadipate enol‑lactonase
	?	NC_002947	1573532 =	28 (1.260)					coding (248/792 nt)	pcaD	3‑oxoadipate enol‑lactonase

CTGGGCATGTGGGACACCCAGATTCCGCTCTGGAGTCAGCACTTCCGGGTGCTGCGCTATGACACCCGTGGTCACGGCGCATCGCTGGTCACTGAAGGCCCTTACAGCATCGAACAGCTGGGCCGCGACGTGCTGGCCCTGCTCGATGGCCTGGACATTCAAAAGGCTCACTTCGTCGGCCTGTCGATGGGCGGCCTGATCGGCCAGTGGCTGGGTATCCATGCAGGTGAGCGCCTGCACAGCCTGACCCTGTGCAACACGGCCGCCAAGATCGCCAATGACGAGGTGTGGAACACCC  >  NC_002947/1573384‑1573681                                                                                                                                                     |                                                                                                                                                      cTGGGCATGTGGGACACCCAGATTCCGCTCTGGAGTCAGCACTTCCGGGTGCTGCGCTATGACACCCGTGGTCACGGCGCATCGCTGGTCACTGAAGGCCCTTACAGCATCGAACAGCTGGGCCGCGACGTGCTGGCCCTGCTCGATGGc                                                                                                                                                      >  2:166995/1‑150 (MQ=255)      cATGTGGGACACCCAGATTCCGCTCTGGAGTCAGCACTTCCGGGTGCTGCGCTATGACACCCGTGGTCACGGCGCATCGCTGGTCACTGAAGGCCCTTACAGCATCGAACAGCTGGGCCGCGACGTGCTGGCCCTGCTCGATGGCCTGGa                                                                                                                                                 >  1:121898/1‑150 (MQ=255)         tcaggctgtgcaggcgctcacctgcatggatacccagccactggccgatcaggccgcccatcgacaggccgacgaagtgagccttttgaatgtccaggcCATCGAACAGCTGGGCCGCGACGTGCTGGCCCTGCTCGATgg                                                                                                                                                       <  2:356461‑M1/42‑1 (MQ=255)         tcaggctgtgcaggcgctcacctgcatggatacccagccactggccgatcaggccgcccatcgacaggccgacgaagtgagccttttgaatgtccaggcCATCGAACAGCTGGGCCGCGACGTGCTGGCCCTGCTCGATgg                                                                                                                                                       >  1:356461‑M1/100‑141 (MQ=255)          tgGGACACCCAGATTCCGCTCTGGAGTCAGCACTTCCGGGTGCTGCGCTATGACACCCGTGGTCACGGCGCATCGCTGGTCACTGAAGGCCCTTACAGCATCGAACAGCTGGGCCGCGACGTGCTGGCCCTGCTCGATGGCCTGGACAtt                                                                                                                                             >  2:5515/1‑150 (MQ=255)            ggACACCCAGATTCCGCTCTGGAGTCAGCACTTCCGGGTGCTGCGCTATGACACCCGTGGTCACGGCGCATCGCTGGTCACTGAAGGCCCTTACAGCATCGAACAGCTGGGCCGCGACGTGCTGGCCCTGCTCGATGGCCTGGACATTCa                                                                                                                                           <  1:5515/150‑1 (MQ=255)                  ccAGATTCCGCTCTGGAGTCAGCACTTCCGGGTGCTGCGCTATGACACCCGTGGTCACGGCGCATCGCTGGTCACTGAAGGCCCTTACAGCATCGAACAGCTGGGCCGCGACGTGCTGGCCCTGCTCGATGGCCTGGACATTCaaaa                                                                                                                                        <  2:23124/147‑1 (MQ=255)                  ccAGATTCCGCTCTGGAGTCAGCACTTCCGGGTGCTGCGCTATGACACCCGTGGTCACGGCGCATCGCTGGTCACTGAAGGCCCTTACAGCATCGAACAGCTGGGCCGCGACGTGCTGGCCCTGCTCGATGGCCTGGACATTCaaaa                                                                                                                                        >  1:23124/1‑147 (MQ=255)                           gCTCTGGAGTCAGCACTTCCGGGTGCTGCGCTATGACACCCGTGGTCACGGCGCATCGCTGGTCACTGAAGGCCCTTACAGCATCGAACAGCTGGGCCGCGACGTGCTGGCCCTGCTCGATGGCCTGGACATTCAAAAGGCTCACTtcgc                                                                                                                            >  2:193081/1‑149 (MQ=255)                              ctGGAGTCAGCACTTCCGGGTGCTGCGCTATGACACCCGTGGTCACGGCGCATCGCTGGTCACTGAAGGCCCTTACAGCATCGAACAGCTGGGCCGCGACGTGCTGGCCCTGCTCGATGGCCTGGACATTCAAAAGGCTCACTTCGTCgg                                                                                                                         >  2:149456/1‑150 (MQ=255)                                        cACTTCCGGGTGCTGCGCTATGACACCCGTGGTCACGGCGCATCGCTGGTCACTGAAGGCCCTTACAGCATCGAACAGCTGGGCCGCGACGTGCTGGCCCTGCTCGATGGCCTGGACATTCAAAAGGCTCACTTCGTCGGCCTGTCGATg                                                                                                               <  1:149456/150‑1 (MQ=255)                                                ggTGCTGCGCTATGACACCCGTGGTCACGGCGCATCGCTGGTCACTGAAGGCCCTTACAGCATCGAACAGCTGGGCCGCGACGTGCTGGCCCCGCTCGATGGCCTGGACATTCAAAAGGCTCACTTCGTCGGCCTGTCGATGGGCGGACt                                                                                                       <  1:352613/150‑1 (MQ=255)                                                 gTGCTGCGCTATGACACCCGTGGTCACGGCGCATCGCTGGTCACTGAAGGCCCTTACAGCATCGAACAGCTGGGCCGCGACGTGCTGGCCCTGCTCGATGGCCTGGACATTCAAAAGGCTCACTTCGTCGGCCTGTCGATGGGCGGCCTg                                                                                                      >  2:166152/1‑150 (MQ=255)                                                                 cccGTGGTCACGGCGCATCGCTGGTCACTGAAGGCCCTTACAGCATCGAACAGCTGGGCCGCGACGTGCTGGCCCTGCTCGATGGCCTGGACATTCAAAAGGCTCACTTCGTCGGCCTGTCGATGGGCGGCCTGATCGGCCAGTGGCTgg                                                                                      <  1:166152/150‑1 (MQ=255)                                                                  ccGTGGTCACGGCGCATCGCTGGTCACTGAAGGCCCTTACAGCATCGAACAGCTGGGCCGCGACGTGCTGGCCCTGCTCGATGGCCTGGACATTCAAAAGGCTCAc                                                                                                                                 <  2:83064/106‑1 (MQ=255)                                                                  ccGTGGTCACGGCGCATCGCTGGTCACTGAAGGCCCTTACAGCATCGAACAGCTGGGCCGCGACGTGCTGGCCCTGCTCGATGGCCTGGACATTCAAAAGGCTCAc                                                                                                                                 >  1:83064/1‑106 (MQ=255)                                                                         cACGGCGCATCGCTGGTCACTGAAGGCCCTTACAGCATCGAACAGCTGGGCCGCGACGTGCTGGCCCTGCTCGATGGCCTGGACATTCAAAAGGCTCACTTCGTCGGCCTGTCGATGGGCGGCCTGATCGGCCAGTGGCTGGGTATCCAt                                                                              >  1:218572/1‑150 (MQ=255)                                                                                 aTCGCTGGTCACTGAAGGCCCTTACAGCATCGAACAGCTGGGCCGCGACGTGCTGGCCCTGCTCGATGGCCTGGACATTCAAAAGGCTCACTTCGTCGGCCTGTCGATGGGCGGCCTGATCGGCCAGTGGCTGGGTATCCATGCAGGTGa                                                                      <  2:121898/150‑1 (MQ=255)                                                                                       ggTCACTGAAGGCCCTTACAGCATCGAACAGCTGGGCCGCGACGTGCTGGCCCTGCTCGATGGCCTGGACATTCAAAAGGCTCACTTCGTCGGCCTGTCGATGGGCGGCCTGATCGGCCAGTGGCTGGGTATCCATGCAGGTGAGCGCCt                                                                <  2:218572/150‑1 (MQ=255)                                                                                        gTCACTGAAGGCCCTTACAGCATCGAACAGCTGGGCCGAGACGTGCTGGATATGCTTGATGGCCTTGACATTCAAAAGGCTCACTTCGTCGGCCTGTCGATGGGCGGCCTGATCGGCCAGTGGCTGGGTATCCATGCAGGTGAGCGCCTg                                                               >  1:168162/1‑150 (MQ=255)                                                                                         tCACTGAAGGCCCTTACAGCATCGAACAGCTGGGCCGCGACGTGCTGGCCCTGCTCGATGGCCTGGACATTCAAAAGGCTCACTTCGTCGGCCTGTCGATGGGCGGCCTGATCGGCCAGTGGCTGGGTATCCATGCAGGTGAGCGCCTGc                                                              >  1:492124/1‑150 (MQ=255)                                                                                               aaGGCCCTTACAGCATCGAACAGCTGGGCCGCGACGTGCTGGCCCTGCTCGATGGc                                                                                                                                                      <  2:29271/56‑1 (MQ=255)                                                                                               aaGGCCCTTACAGCATCGAACAGCTGGGCCGCGACGTGCTGGCCCTGCTCGATGGc                                                                                                                                                      >  1:29271/1‑56 (MQ=255)                                                                                                  gCCCTTACAGCATCGAACAGCTGGGCCGCGACGTGCTGGCCCTGCTCGATGGCCTGGACATTCAAAAGGCTCACTTCGTCGGCCTGTCGATGGGCGGCCTGATCGGCCAGTGGCTGGGTATCCATGCAGGTGAGCGCCTGCACAGCCTGa                                                     >  1:400249/1‑150 (MQ=255)                                                                                                    ccTTACAGCATCGAACAGCTGGGCCGCGACGTGCTGGCCCTGCTCGATGGCCTGGACATTCAAAAGGCTCACTTCGTCGGCCTGTCGATGGGCGGCCTGATCGGCCAGTGGCTGGGTATCCATGCAGGTGAGCGCCTGCACAGCCTGAcc                                                   >  2:610139/1‑150 (MQ=255)                                                                                                     cTTACAGCATCGAACAGCTGGGCCGCGACGTGCTGGCCCTGCTCGATGGCCTGGACATTCAAAAGGCTCACTTCGTCGGCCTGTCGATGGGCGGCCTGATCGGCCAGTGGCTGGGTATCCATGCAGGTGAGCGCCTGCACAGCCTGAccc                                                  >  1:366468/1‑150 (MQ=255)                                                                                                          aGCATCGAACAGCTGGGCCGCGACGTGCTGGCCCTGCTCGATGGCCTGGACATTCAAAAGGCTCACTTCGTCGGCCTGTCGATGGGCGGCCTGATCGGCCAGTGGCTgg                                                                                      <  1:214671/109‑1 (MQ=255)                                                                                                          aGCATCGAACAGCTGGGCCGCGACGTGCTGGCCCTGCTCGATGGCCTGGACATTCAAAAGGCTCACTTCGTCGGCCTGTCGATGGGCGGCCTGATCGGCCAGTGGCTgg                                                                                      >  2:214671/1‑109 (MQ=255)                                                                                                          aGCATCGAACAGCTGGGCCGCGACGTGCTGGCCCTGCTCGATGGCCTGGACATTCAAAAGGCTCACTTCGTCGGCCTGTCGATGGGCGGCCTGATCGGCCAGTGGCTGGGTATCCATGCAGGTGAGCGCCTGCACAGCCTGACCCTGTGc                                             >  1:383816/1‑150 (MQ=255)                                                                                                           ccatcgagcagggccagcacgtcgcggcccagctgttcgatgGCCTGGACATTCAAAAGGCTCACTTCGTCGGCCTGTCGATGGGCGGCCTGATCGGCCAGTGGCTGGGTATCCATGCAGGTGAGCGCCTGCACAGCCTGa                                                     <  2:356461‑M2/99‑1 (MQ=255)                                                                                                           ccatcgagcagggccagcacgtcgcggcccagctgttcgatgGCCTGGACATTCAAAAGGCTCACTTCGTCGGCCTGTCGATGGGCGGCCTGATCGGCCAGTGGCTGGGTATCCATGCAGGTGAGCGCCTGCACAGCCTGa                                                     >  1:356461‑M2/43‑141 (MQ=255)                                                                                                            catcgagcagggccagcacgtcgcggcccagctgttcgatgGCCTGGACATTCAAAAGGCTCACTTCGTCGGCCTGTCGATGGGCGGCCTGATCGGCCAGTGGCTGGGTATCCATGCAGGTGAGCGCCTGCACAGCCTGACCCTGTGCaa                                           >  1:382628‑M2/42‑150 (MQ=255)                                                                                                                 AACAGCTGGGCCGCGACGTGCTGGCCCTGCTCGATGGCCTGGACATTCAAAAGGCTCACTTCGTCGGCCTGTCGATGGGCGGCCTGATCGGCCAGTGGCTGGGTATCCATGCAGGTGAGCGCCTGCACAGCCTGACCCTGTGCAACACgg                                      <  1:470051‑M1/150‑1 (MQ=255)                                                                                                                    agcagggccagcacgtcgcggcacagctcgatgGCCGGGACATTCAAAAGGCTCAATTCGTCGGCCTGTCGATGGGCGGCCTGATCGGCCAGTGGCTGGGTATCCATGCAGGTGAGCGCCTGCACAGCCTGACCCTGTGCAACACGgccg                                   >  1:321493‑M2/34‑150 (MQ=255)                                                                                                                                  gTGCTGGCCCTGCTCGATGGCCTGGACATTCAAAAGGCTCACTTCGTCGGCCTGTCGATGGGCGGCCTGATCGGCCAGTGGCTGGGTATCCATGCAGGTGAGCGCCTGCACAGCCTGACCCTGTGCAACACGGCCGCCAAGATCGCCAAt                     <  2:470051/150‑1 (MQ=255)                                                                                                                                     cTGGCCCTGCTCGATGGCCTGGACATTCAAAAGGCTCACTTCGTCGGCCTGTCGATGGGCGGCCTGATCGGCCAGTGGCTGGGTATCCATGCAGGTGAGCGCCTGCACAGCCTGACCCTGTGCAACACGGCCGCCAAGATCGCCAATGAc                  >  1:150573/1‑150 (MQ=255)                                                                                                                                     cTGGCCCTGCTCGATGGCCTGGACATTCAAAAGGCTCACTTCGTCGGCCTGTCGATGGGCGGCCTGATCGGCCAGTGGCTGGGTATCCATGCAGGTGAGCGCCTGCACAGCCTGACCCTGTGCAACACGGCCGCCAAGATCGCCAATGAc                  <  2:150573/150‑1 (MQ=255)                                                                                                                                        gCCCAGCTCGATGGCCTGGACATTCAAAAGGCTCACTTCGTCGGCCTGTCGATGGGCGGCCTGATCGGCCAGTGGCTGGGTATCCATGCAGGTGAGCGCCTGCACAGCCTGACCCTGTGCAACACGGCCGCCAAGATCGCCAATGACGAg               <  2:321493/150‑1 (MQ=255)                                                                                                                                            tGCTCGATGGCCTGGACATTCAAAATGCTCACTTCGTCGGCCTGTCGATGGGCGGCCTGATCGGCCAGTCGCTGGGTATCCATGCAGGTGAGCGCCTGCACAGCCTGACCCTGTGCAACACGGCCGCCAAGATCGCCAATGACGAGgtgt           <  1:166995/150‑1 (MQ=255)                                                                                                                                            tGCTCGATGGCCTGGACATTCAAAAGGCTCACTTCGTCGGCCTGTCGATGGGCGGCCTGATCGGCCAGTGGCTGGGTATCCATGCAGGTGAGCGCCTGCACAGCCTGACCCTGTGCAACACGGCCGCCAAGATCGCCAATGACGAGgtgt           <  2:383816/150‑1 (MQ=255)                                                                                                                                                     gCCTGGACATTCAAAAGGCTCACTTCGTCGGCCTGTCGATGGGCGGCCTGATCGGCCAGTGGCTGGGTATCCATGCAGGTGAGCGCCTGCACAGCCTGACCCTGTGCAACACGGCCGCCAAGATCGCCAATGACGAGGTGTGGAACAccc  <  1:610139/150‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                      CTGGGCATGTGGGACACCCAGATTCCGCTCTGGAGTCAGCACTTCCGGGTGCTGCGCTATGACACCCGTGGTCACGGCGCATCGCTGGTCACTGAAGGCCCTTACAGCATCGAACAGCTGGGCCGCGACGTGCTGGCCCTGCTCGATGGCCTGGACATTCAAAAGGCTCACTTCGTCGGCCTGTCGATGGGCGGCCTGATCGGCCAGTGGCTGGGTATCCATGCAGGTGAGCGCCTGCACAGCCTGACCCTGTGCAACACGGCCGCCAAGATCGCCAATGACGAGGTGTGGAACACCC  >  NC_002947/1573384‑1573681

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.