| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1811455 | 21 (0.900) | 3 (0.140) | 3/240 | NT | 12.5% | intergenic (+20/+108) | ispD/PP_1615 | 2‑C‑methyl‑D‑erythritol 4‑phosphate cytidylyltransferase/LysR family transcriptional regulator |
| ? | NC_002947 | = 1811537 | 22 (1.000) | intergenic (+102/+26) | ispD/PP_1615 | 2‑C‑methyl‑D‑erythritol 4‑phosphate cytidylyltransferase/LysR family transcriptional regulator | |||||
CCGACGAAGCCTCGGCCATCGAATGGTCCGGTCAGGCGCCGCGGCTGGTGGAAGGGCGCAGTGACAACATAAAGGTGACCCGGCCCGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1811305‑1811455‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggcctCTTCGCGGGTAAACCCGCTCCTACGACGGTCTGTGTCCAACCACCGATGCAATCCATTGTAGGAGCGGGTTTACCCGCGAAAAGGCCAGCCCAGGAGAACGCTCAGCGTTTACCCGCCCAGCGCTGGCGCAACCATTCGAGATCTTCGG < NC_002947/1811537‑1811389 CCGACGAAGCCTCGGCCATCGAATGGTCCGGTCAGGCGCCGCGGCTGGTGGAAGGGCGCAGTGACAACATAAAGGTGACCCGGCCCGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGC < 1:463688/149‑1CCGACGAAGCCTCGGCCATCGAATGGTCCGGTCAGGCGCCGCGGCTGGTGGAAGGGCGCAGTGACAACATAAAGGTGACCCGGCCCGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGC > 2:463688/1‑149 CGACGAAGCCTCGGCCATCGAATGGTCCGGTCAGGCGCCGCGGCTGGTGGAAGGGCGCAGTGACAACATAAAGGTGACCCGGCCCGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCT > 1:390524/1‑150 ACAACATAAAGGTGACCCGGCCCGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGTCTGTGTCCAACCACCGATGCAATCCATTGTAG < 2:324768/150‑1 CCGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGTCTGTGTCCAACCACCGATGCAATCCATTGTAGGAGCGGGTTTACCCGCGAAAA > 2:149113/1‑150 AGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGTCTGTGTCCAACCACCGATGCAATCCATTGTAGGAGCGGGTTTACCCGCGAAAAGGCC < 1:149113/150‑1 GCCTCTTCGCGGGTGAACCCGCTCCTACGACGGTCTGTGTCCAACCACCGATGCAATCCATTGTAGGAGCGGGTTTACCCGCGAAAAGGCCAGCCCAGGAGAACGCTCAGCGTTTACCCGCCCAGCGCT > 1:20743/1‑129 GCCTCTTCGCGGGTGAACCCGCTCCTACGACGGTCTGTGTCCAACCACCGATGCAATCCATTGTAGGAGCGGGTTTACCCGCGAAAAGGCCAGCCCAGGAGAACGCTCAGCGTTTACCCGCCCAGCGCT < 2:20743/129‑1 GCCTCTTCGCGGGTAAACCCGCTCCTACGACGGTCTGTGTCCAACCACCGATGCAATCCATTGTAGGAGCGGGCTTACCCGCGAAAAGGCCAGCCCAGGAGAACGCTCAGCGTTTACCCGCCCAGCGCTGGCGCAACCATTCGAGATCTT > 1:432687/1‑150 CCTCTTCGCGGGTAAACCCGCTCCTACGACGGTCTGTGTCCAAACACATATGCAATCCATTGTAGGAGCGGGTTTACCCGCGAAAAGGCCAGCCCAGGAGAACGCTCAGCGTTTACCCGCCCAGCGCTGGCGCAACCATTCGAGATCTTC < 1:67067/150‑1 TCTTCGCGGGTAAACCCGCTCCTACGACGGTCTGTGTCCAACCACCGATGCAATCCATTGTAGGAGCGGGTTTACCCGCGAAAAGGCCAGCCCAGGAGAACGCTCAGCGTTTACCCGCCCAGCGCTGGCGCAACCATTCGAGATCTTCGG < 1:232404/150‑1 CCGACGAAGCCTCGGCCATCGAATGGTCCGGTCAGGCGCCGCGGCTGGTGGAAGGGCGCAGTGACAACATAAAGGTGACCCGGCCCGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1811305‑1811455‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggcctCTTCGCGGGTAAACCCGCTCCTACGACGGTCTGTGTCCAACCACCGATGCAATCCATTGTAGGAGCGGGTTTACCCGCGAAAAGGCCAGCCCAGGAGAACGCTCAGCGTTTACCCGCCCAGCGCTGGCGCAACCATTCGAGATCTTCGG < NC_002947/1811537‑1811389 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |